Clone Sequence Records
BO14445.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-05-29
> BO14445.3prime
ATGGTCTAGAAAGCTTGCGTAGTTGGCTCCGCGCTGTATGCAGGGTCCGC
TGGAGATGGATCCCGCCTCCAGGCTCGGACAGTTGACCTTCTGCAGCTCG
GCAATGCGCTGCCATGTCATGTTGAAGTGACGCGCGGAACGGGCATTGGA
TAGCTTGGCGATGGGTCCCAGGGTGCGGTATCCATTGGTAATGAAGCGTA
TGAATCCCTTGGCCGTTAGGTCCAGCAGAGCGGTCTTCACCTGCGACTCC
AGATCGCCACAGGCAAAGGGTTCCTTTTCCAGCATCTCCAGAATGTGCTC
CTCGTGGATACCATTGCTGTACTTGGGATGATCCTGGAAGATGCGCACCA
TGTCCAAAATATATAGCGGCAAATTGATGTGGTAGCTGTTGAAAGGAAGC
CGCAAGGTGGTGGGCTCACATTCCCTGATCGATCCTTCGTCACACATGTC
GACTGATAACT
BO14445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-PA | 432 | CG3687-RA | 1..429 | 447..19 | 2020 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-RA | 708 | CG3687-RA | 138..570 | 451..19 | 2075 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16237089..16237341 | 271..19 | 1190 | 98 | Minus |
| 2R | 25286936 | 2R | 16236852..16237031 | 451..272 | 885 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:32:04 has no hits.
BO14445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:12 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-PA | 1..432 | 15..447 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:06 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-PA | 1..432 | 15..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:12 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 9..455 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:18 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 9..455 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:18 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16236849..16237031 | 272..455 | 98 | -> | Minus |
| 2R | 16237089..16237352 | 9..271 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:12 Download gff for
BO14445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12124354..12124536 | 272..455 | 98 | -> | Minus |
| arm_2R | 12124594..12124857 | 9..271 | 96 | | Minus |
BO14445.5prime Sequence
461 bp (460 high quality bases) assembled on 2006-05-29
> BO14445.5prime
GAAGTTATCAGTCGACATGTGTGACGAAGGATCGATCAGGGAATGTGAGC
CCACCACCTTGCGGCTTCCTTTCAACAGCTACCACATCAATTTGCCGCTA
TATATTTTGGACATGGTGCGCATCTTCCAGGATCATCCCAAGTACAGCAA
TGGTATCCACGAGGAGCACATTCTGGAGATGCTGGAAAAGGAACCCTTTG
CCTGTGGCGATCTGGAGTCGCAGGTGAAGACCGCTCTGCTGGACCTAACG
GCCAAGGGATTCATACGCTTCATTACCAATGGATACCGCACCCTGGGACC
CATCGCCAAGCTATCCAATGCCCGTTCCGCGCGTCACTTCAACATGACAT
GGCAGCGCATTGCCGAGCTGCAGAAGGTCAACTGTCCGAGCCTGGAGGCG
GGATCCATCTCCAGCGGACCCTGCATACAGCGCGGAGCCAACTACGCAAG
CTTTCTAGACC
BO14445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-PA | 432 | CG3687-RA | 1..429 | 17..445 | 2020 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-RA | 708 | CG3687-RA | 138..570 | 13..445 | 2075 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16237089..16237341 | 193..445 | 1190 | 98 | Plus |
| 2R | 25286936 | 2R | 16236852..16237031 | 13..192 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:08:43 has no hits.
BO14445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:13 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-PA | 1..432 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:07 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-PA | 1..432 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:01 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 9..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:17 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 135..581 | 9..455 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:17 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16236849..16237031 | 9..192 | 98 | -> | Plus |
| 2R | 16237089..16237352 | 193..455 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:01 Download gff for
BO14445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12124354..12124536 | 9..192 | 98 | -> | Plus |
| arm_2R | 12124594..12124857 | 193..455 | 96 | | Plus |
BO14445.complete Sequence
463 bp assembled on 2006-10-11
GenBank Submission: FJ633129
> BO14445.complete
GAAGTTATCAGTCGACATGTGTGACGAAGGATCGATCAGGGAATGTGAGC
CCACCACCTTGCGGCTTCCTTTCAACAGCTACCACATCAATTTGCCGCTA
TATATTTTGGACATGGTGCGCATCTTCCAGGATCATCCCAAGTACAGCAA
TGGTATCCACGAGGAGCACATTCTGGAGATGCTGGAAAAGGAACCCTTTG
CCTGTGGCGATCTGGAGTCGCAGGTGAAGACCGCTCTGCTGGACCTAACG
GCCAAGGGATTCATACGCTTCATTACCAATGGATACCGCACCCTGGGACC
CATCGCCAAGCTATCCAATGCCCGTTCCGCGCGTCACTTCAACATGACAT
GGCAGCGCATTGCCGAGCTGCAGAAGGTCAACTGTCCGAGCCTGGAGGCG
GGATCCATCTCCAGCGGACCCTGCATACAGCGCGGAGCCAACTACGCAAG
CTTTCTAGACCAT
BO14445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-RA | 432 | CG3687-PA | 1..429 | 17..445 | 2070 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-RA | 708 | CG3687-RA | 138..570 | 13..445 | 2075 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16237089..16237341 | 193..445 | 1190 | 98 | Plus |
| 2R | 25286936 | 2R | 16236852..16237031 | 13..192 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:37 has no hits.
BO14445.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:33 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 1..432 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:49 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 78..524 | 9..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:39 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 142..570 | 17..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:33 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 78..524 | 9..455 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:24 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3687-RA | 142..570 | 17..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:24 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16236856..16237031 | 17..192 | 100 | -> | Plus |
| 2R | 16237089..16237341 | 193..447 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:39 Download gff for
BO14445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12124361..12124536 | 17..192 | 100 | -> | Plus |
| arm_2R | 12124594..12124846 | 193..447 | 97 | | Plus |
BO14445.pep Sequence
Translation from 16 to 463
> BO14445.pep
MCDEGSIRECEPTTLRLPFNSYHINLPLYILDMVRIFQDHPKYSNGIHEE
HILEMLEKEPFACGDLESQVKTALLDLTAKGFIRFITNGYRTLGPIAKLS
NARSARHFNMTWQRIAELQKVNCPSLEAGSISSGPCIQRGANYASFLDH
BO14445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3687-PA | 143 | CG3687-PA | 1..143 | 1..143 | 761 | 100 | Plus |
