Clone Sequence Records
BO14447.3prime Sequence
590 bp (589 high quality bases) assembled on 2006-05-29
> BO14447.3prime
ATGGTCTAGAAAGCTTGCGATGAGATTGGTTTTCTTGATAAGGTTGAGAA
ACTCCTCCTTGCTAACCTCACCATCACCGGAAACGTTGGCTTCGTCGATC
ATCTCCTGCAGTTCCTCGTCGGTGAGCTGTTCGCCCAGCTCCTTGGCCAC
GCGTTTCAAGTTGAGGAAGGATATGCCGCCGGTGCGATCGTCATCGAAGA
AGGAAAAGGCCTTCATCATATCCTGATTAGAGTCCTTTTCCGCCATCTTC
AGGCGCATCAGATATAGAAAATCGTTAAAGGCAATCCTTCCCGTCTTGTC
CTTATCGATTTCGTCCATCATACGCTTTATATCCTCTTTCTTCGGCTCGA
ATCCCAGGGCACGAATGGCCACGCGAAGCTCCTTGGTTTCGATAAAGCCC
GTGCACTGGGTGTCGAACAAATCGAAGGCTTTCTTAATGTCCACCTTCTG
GCTTAGCGACAGGTCAAAGGTCGGCAGTTTGGGCTTTTTCGATTTTTTAG
CCCTGCTTGAGATCGATGCACTCGAATGCATTACACTGGCGGAGGACACC
ATACTACCAAGTCGTTTGCCGGACATGTCGACTGATAACT
BO14447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-PA | 561 | CG31802-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-RA | 823 | CG31802-RA | 89..647 | 577..19 | 2795 | 100 | Minus |
CG17493-RD | 5997 | CG17493-RD | 384..598 | 441..227 | 190 | 72.6 | Minus |
CG17493-RC | 1364 | CG17493-RC | 384..598 | 441..227 | 190 | 72.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18208591..18209149 | 19..577 | 2795 | 100 | Plus |
2L | 23513712 | 2L | 22550682..22550896 | 441..227 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:07:36 has no hits.
BO14447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:15 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:12 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:26 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 11..586 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:49 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 11..586 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:49 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18208586..18209154 | 11..586 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:26 Download gff for
BO14447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18208586..18209154 | 11..586 | 98 | | Plus |
BO14447.5prime Sequence
590 bp (589 high quality bases) assembled on 2006-05-29
> BO14447.5prime
GAAGTTATCAGTCGACATGTCCGGCAAACGACTTGGTAGTATGGTGTCCT
CCGCCAGTGTAATGCATTCGAGTGCATCGATCTCAAGCAGGGCTAAAAAA
TCGAAAAAGCCCAAACTGCCGACCTTTGACCTGTCGCTAAGCCAGAAGGT
GGACATTAAGAAAGCCTTCGATTTGTTCGACACCCAGTGCACGGGCTTTA
TCGAAACCAAGGAGCTTCGCGTGGCCATTCGTGCCCTGGGATTCGAGCCG
AAGAAAGAGGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGAC
GGGAAGGATTGCCTTTAACGATTTTCTATATCTGATGCGCCTGAAGATGG
CGGAAAAGGACTCTAATCAGGATATGATGAAGGCCTTTTCCTTCTTCGAT
GACGATCGCACCGGCGGCATATCCTTCCTCAACTTGAAACGCGTGGCCAA
GGAGCTGGGCGAACAGCTCACCGACGAGGAACTGCAGGAGATGATCGACG
AAGCCAACGTTTCCGGTGATGGTGAGGTTAGCAAGGAGGAGTTTCTCAAC
CTTATCAAGAAAACCAATCTCATCGCAAGCTTTCTAGACC
BO14447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-PA | 561 | CG31802-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-RA | 823 | CG31802-RA | 89..647 | 16..574 | 2795 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 384..598 | 152..366 | 190 | 72.6 | Plus |
CG17493-RC | 1364 | CG17493-RC | 384..598 | 152..366 | 190 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18208591..18209149 | 574..16 | 2795 | 100 | Minus |
2L | 23513712 | 2L | 22550682..22550896 | 152..366 | 190 | 72.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:07:11 has no hits.
BO14447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:16 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:14 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:41 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 7..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:57 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 7..582 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:57 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18208586..18209154 | 7..582 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:41 Download gff for
BO14447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18208586..18209154 | 7..582 | 98 | | Minus |
BO14447.complete Sequence
592 bp assembled on 2006-10-11
GenBank Submission: FJ633130
> BO14447.complete
GAAGTTATCAGTCGACATGTCCGGCAAACGACTTGGTAGTATGGTGTCCT
CCGCCAGTGTAATGCATTCGAGTGCATCGATCTCAAGCAGGGCTAAAAAA
TCGAAAAAGCCCAAACTGCCGACCTTTGACCTGTCGCTAAGCCAGAAGGT
GGACATTAAGAAAGCCTTCGATTTGTTCGACACCCAGTGCACGGGCTTTA
TCGAAACCAAGGAGCTTCGCGTGGCCATTCGTGCCCTGGGATTCGAGCCG
AAGAAAGAGGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGAC
GGGAAGGATTGCCTTTAACGATTTTCTATATCTGATGCGCCTGAAGATGG
CGGAAAAGGACTCTAATCAGGATATGATGAAGGCCTTTTCCTTCTTCGAT
GACGATCGCACCGGCGGCATATCCTTCCTCAACTTGAAACGCGTGGCCAA
GGAGCTGGGCGAACAGCTCACCGACGAGGAACTGCAGGAGATGATCGACG
AAGCCAACGTTTCCGGTGATGGTGAGGTTAGCAAGGAGGAGTTTCTCAAC
CTTATCAAGAAAACCAATCTCATCGCAAGCTTTCTAGACCAT
BO14447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-RA | 561 | CG31802-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
CG17493-RD | 549 | CG17493-PD | 124..338 | 152..366 | 190 | 72.6 | Plus |
CG17493-RC | 549 | CG17493-PC | 124..338 | 152..366 | 190 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-RA | 823 | CG31802-RA | 89..647 | 16..574 | 2795 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 384..598 | 152..366 | 190 | 72.6 | Plus |
CG17493-RC | 1364 | CG17493-RC | 384..598 | 152..366 | 190 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18208591..18209149 | 574..16 | 2795 | 100 | Minus |
2L | 23513712 | 2L | 22550682..22550896 | 152..366 | 190 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:24 has no hits.
BO14447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:35 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:57 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 7..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:21 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 90..647 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:35 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 79..652 | 7..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:06 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31802-RA | 90..647 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:06 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18208589..18209148 | 17..576 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:21 Download gff for
BO14447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18208589..18209148 | 17..576 | 99 | | Minus |
BO14447.pep Sequence
Translation from 16 to 592
> BO14447.pep
MSGKRLGSMVSSASVMHSSASISSRAKKSKKPKLPTFDLSLSQKVDIKKA
FDLFDTQCTGFIETKELRVAIRALGFEPKKEDIKRMMDEIDKDKTGRIAF
NDFLYLMRLKMAEKDSNQDMMKAFSFFDDDRTGGISFLNLKRVAKELGEQ
LTDEELQEMIDEANVSGDGEVSKEEFLNLIKKTNLIASFLDH
BO14447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31802-PA | 186 | CG31802-PA | 1..186 | 1..186 | 925 | 100 | Plus |
CG17493-PD | 182 | CG17493-PD | 23..181 | 27..185 | 544 | 66.7 | Plus |
CG17493-PC | 182 | CG17493-PC | 23..181 | 27..185 | 544 | 66.7 | Plus |
CG17493-PB | 182 | CG17493-PB | 23..181 | 27..185 | 544 | 66.7 | Plus |
Cam-PD | 149 | CG8472-PD | 5..146 | 39..180 | 303 | 43.7 | Plus |