Clone BO14447 Report

Search the DGRC for BO14447

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG31802-RA
Protein status:BO14447.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO14447.3prime Sequence

590 bp (589 high quality bases) assembled on 2006-05-29

> BO14447.3prime
ATGGTCTAGAAAGCTTGCGATGAGATTGGTTTTCTTGATAAGGTTGAGAA
ACTCCTCCTTGCTAACCTCACCATCACCGGAAACGTTGGCTTCGTCGATC
ATCTCCTGCAGTTCCTCGTCGGTGAGCTGTTCGCCCAGCTCCTTGGCCAC
GCGTTTCAAGTTGAGGAAGGATATGCCGCCGGTGCGATCGTCATCGAAGA
AGGAAAAGGCCTTCATCATATCCTGATTAGAGTCCTTTTCCGCCATCTTC
AGGCGCATCAGATATAGAAAATCGTTAAAGGCAATCCTTCCCGTCTTGTC
CTTATCGATTTCGTCCATCATACGCTTTATATCCTCTTTCTTCGGCTCGA
ATCCCAGGGCACGAATGGCCACGCGAAGCTCCTTGGTTTCGATAAAGCCC
GTGCACTGGGTGTCGAACAAATCGAAGGCTTTCTTAATGTCCACCTTCTG
GCTTAGCGACAGGTCAAAGGTCGGCAGTTTGGGCTTTTTCGATTTTTTAG
CCCTGCTTGAGATCGATGCACTCGAATGCATTACACTGGCGGAGGACACC
ATACTACCAAGTCGTTTGCCGGACATGTCGACTGATAACT

BO14447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-PA 561 CG31802-RA 1..558 576..19 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-RA 823 CG31802-RA 89..647 577..19 2795 100 Minus
CG17493-RD 5997 CG17493-RD 384..598 441..227 190 72.6 Minus
CG17493-RC 1364 CG17493-RC 384..598 441..227 190 72.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18208591..18209149 19..577 2795 100 Plus
2L 23513712 2L 22550682..22550896 441..227 190 72.6 Minus
Blast to na_te.dros performed on 2015-02-08 13:07:36 has no hits.

BO14447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:15 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:12 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:26 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 11..586 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:49 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 11..586 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:49 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18208586..18209154 11..586 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:26 Download gff for BO14447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18208586..18209154 11..586 98   Plus

BO14447.5prime Sequence

590 bp (589 high quality bases) assembled on 2006-05-29

> BO14447.5prime
GAAGTTATCAGTCGACATGTCCGGCAAACGACTTGGTAGTATGGTGTCCT
CCGCCAGTGTAATGCATTCGAGTGCATCGATCTCAAGCAGGGCTAAAAAA
TCGAAAAAGCCCAAACTGCCGACCTTTGACCTGTCGCTAAGCCAGAAGGT
GGACATTAAGAAAGCCTTCGATTTGTTCGACACCCAGTGCACGGGCTTTA
TCGAAACCAAGGAGCTTCGCGTGGCCATTCGTGCCCTGGGATTCGAGCCG
AAGAAAGAGGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGAC
GGGAAGGATTGCCTTTAACGATTTTCTATATCTGATGCGCCTGAAGATGG
CGGAAAAGGACTCTAATCAGGATATGATGAAGGCCTTTTCCTTCTTCGAT
GACGATCGCACCGGCGGCATATCCTTCCTCAACTTGAAACGCGTGGCCAA
GGAGCTGGGCGAACAGCTCACCGACGAGGAACTGCAGGAGATGATCGACG
AAGCCAACGTTTCCGGTGATGGTGAGGTTAGCAAGGAGGAGTTTCTCAAC
CTTATCAAGAAAACCAATCTCATCGCAAGCTTTCTAGACC

BO14447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-PA 561 CG31802-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-RA 823 CG31802-RA 89..647 16..574 2795 100 Plus
CG17493-RD 5997 CG17493-RD 384..598 152..366 190 72.6 Plus
CG17493-RC 1364 CG17493-RC 384..598 152..366 190 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18208591..18209149 574..16 2795 100 Minus
2L 23513712 2L 22550682..22550896 152..366 190 72.6 Plus
Blast to na_te.dros performed on 2015-02-11 11:07:11 has no hits.

BO14447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:16 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:14 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:41 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 7..582 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:57 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 7..582 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:57 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18208586..18209154 7..582 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:41 Download gff for BO14447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18208586..18209154 7..582 98   Minus

BO14447.complete Sequence

592 bp assembled on 2006-10-11

GenBank Submission: FJ633130

> BO14447.complete
GAAGTTATCAGTCGACATGTCCGGCAAACGACTTGGTAGTATGGTGTCCT
CCGCCAGTGTAATGCATTCGAGTGCATCGATCTCAAGCAGGGCTAAAAAA
TCGAAAAAGCCCAAACTGCCGACCTTTGACCTGTCGCTAAGCCAGAAGGT
GGACATTAAGAAAGCCTTCGATTTGTTCGACACCCAGTGCACGGGCTTTA
TCGAAACCAAGGAGCTTCGCGTGGCCATTCGTGCCCTGGGATTCGAGCCG
AAGAAAGAGGATATAAAGCGTATGATGGACGAAATCGATAAGGACAAGAC
GGGAAGGATTGCCTTTAACGATTTTCTATATCTGATGCGCCTGAAGATGG
CGGAAAAGGACTCTAATCAGGATATGATGAAGGCCTTTTCCTTCTTCGAT
GACGATCGCACCGGCGGCATATCCTTCCTCAACTTGAAACGCGTGGCCAA
GGAGCTGGGCGAACAGCTCACCGACGAGGAACTGCAGGAGATGATCGACG
AAGCCAACGTTTCCGGTGATGGTGAGGTTAGCAAGGAGGAGTTTCTCAAC
CTTATCAAGAAAACCAATCTCATCGCAAGCTTTCTAGACCAT

BO14447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-RA 561 CG31802-PA 1..558 17..574 2790 100 Plus
CG17493-RD 549 CG17493-PD 124..338 152..366 190 72.6 Plus
CG17493-RC 549 CG17493-PC 124..338 152..366 190 72.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-RA 823 CG31802-RA 89..647 16..574 2795 100 Plus
CG17493-RD 5997 CG17493-RD 384..598 152..366 190 72.6 Plus
CG17493-RC 1364 CG17493-RC 384..598 152..366 190 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18208591..18209149 574..16 2795 100 Minus
2L 23513712 2L 22550682..22550896 152..366 190 72.6 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:24 has no hits.

BO14447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:35 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:57 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 7..582 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:21 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 90..647 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:35 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 79..652 7..582 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:06 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
CG31802-RA 90..647 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:06 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18208589..18209148 17..576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:21 Download gff for BO14447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18208589..18209148 17..576 99   Minus

BO14447.pep Sequence

Translation from 16 to 592

> BO14447.pep
MSGKRLGSMVSSASVMHSSASISSRAKKSKKPKLPTFDLSLSQKVDIKKA
FDLFDTQCTGFIETKELRVAIRALGFEPKKEDIKRMMDEIDKDKTGRIAF
NDFLYLMRLKMAEKDSNQDMMKAFSFFDDDRTGGISFLNLKRVAKELGEQ
LTDEELQEMIDEANVSGDGEVSKEEFLNLIKKTNLIASFLDH

BO14447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31802-PA 186 CG31802-PA 1..186 1..186 925 100 Plus
CG17493-PD 182 CG17493-PD 23..181 27..185 544 66.7 Plus
CG17493-PC 182 CG17493-PC 23..181 27..185 544 66.7 Plus
CG17493-PB 182 CG17493-PB 23..181 27..185 544 66.7 Plus
Cam-PD 149 CG8472-PD 5..146 39..180 303 43.7 Plus