Clone BO14450 Report

Search the DGRC for BO14450

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG5213-RA
Protein status:BO14450.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO14450.5prime Sequence

785 bp (784 high quality bases) assembled on 2006-05-29

> BO14450.5prime
GAAGTTATCAGTCGACATGACCAAGAAGGAGTCATCCGTCCCGACGCTAT
GTTGGGGATACGCCGGGATACGCGGCATGTTCCAAACTGGAAGACCAGTG
GATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGAACCTGATCCT
CAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT
CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACT
GGCATAAGCTGTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGC
GGCTGCTGCCGTGAATGGCATGGATGGCTACGAGACTCGCGGCAAGCGAC
TGAAAGTGGCCTTCGCCCGACCTTCGGAATATGAAAGCACCAGCTCCAGC
CTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAAGAAGGTACGAGA
ACTCTTCGCCACCTACGGCAACATCGTGGATGTGAACTTGCTGCGCCACA
AGTTCAACAATAGGTCCCGTGGCGTGGCCTTCTTGCAATTTGAGTTGGTC
CGCGACGCCGAGGTGGCCAAGTACGGCATGGATCGGTACATGATCGAAGG
CGCCTCCCGGCCCCTGACGGTCAAGTTCGTGGAGCGCGAGAAAAAAGGCT
CGAGTTCTACCTCCAGTGGCTCCCAGTATAAGGACAAGCGTAAATCTTCC
CCACCACCCTACAAGCGTCGCGAGAGGACGAACGATCATCATGTGTCTAA
GCGTTCTCGAGATTCGGACGCAAGCTTTCTAGACC

BO14450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5213-PA 756 CG5213-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5213-RA 1019 CG5213-RA 201..953 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15494802..15495554 17..769 3765 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:58:07 has no hits.

BO14450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:21 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5213-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:20 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5213-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:45 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 193..961 9..778 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:37 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 193..961 9..778 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:37 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15494794..15495562 9..778 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:45 Download gff for BO14450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11320516..11321284 9..778 98   Plus

BO14450.complete Sequence

787 bp assembled on 2007-10-29

GenBank Submission: FJ633131

> BO14450.complete
GAAGTTATCAGTCGACATGACCAAGAAGGAGTCATCCGTCCCGACGCTAT
GTTGGGGATACGCCGGGATACGCGGCATGTTCCAAACTGGAAGACCAGTG
GATCCGCCCCCTCCTCTCCCTAATTTGCGGATGAAGACGAACCTGATCCT
CAACTACCTTCCGCAGGACATGACGGAGTCTGAGCTGCACCGTCTCTTCT
CCAAGTTCGGTGAGATCCGCAAGGCCAAGATCATCCGCCACCGCAGGACT
GGCATAAGCTGTTGCTACGGATTCGTCGACTACGTGTCGGAACGCCAGGC
GGCTGCTGCCGTGAATGGCATGGATGGCTACGAGACTCGCGGCAAGCGAC
TGAAAGTGGCCTTCGCCCGACCTTCGGAATATGAAAGCACCAGCTCCAGC
CTGTACGTGGGGAACCTGCCCACGTACATGGATGAGAAGAAGGTACGAGA
ACTCTTCGCCACCTACGGCAACATCGTGGATGTGAACTTGCTGCGCCACA
AGTTCAACAATAGGTCCCGTGGCGTGGCCTTCTTGCAATTTGAGTTGGTC
CGCGACGCCGAGGTGGCCAAGTACGGCATGGATCGGTACATGATCGAAGG
CGCCTCCCGGCCCCTGACGGTCAAGTTCGTGGAGCGCGAGAAAAAAGGCT
CGAGTTCTACCTCCAGTGGCTCCCAGTATAAGGACAAGCGTAAATCTTCC
CCACCACCCTACAAGCGTCGCGAGAGGACGAACGATCATCATGTGTCTAA
GCGTTCTCGAGATTCGGACGCAAGCTTTCTAGACCAT

BO14450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5213-RA 756 CG5213-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5213-RA 1019 CG5213-RA 201..953 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15494802..15495554 17..769 3765 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:54 has no hits.

BO14450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:25 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:39 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 193..961 9..778 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:45 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 201..953 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:56 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 201..953 17..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:56 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
CG5213-RA 201..953 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:56 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15494802..15495554 17..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:45 Download gff for BO14450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11320524..11321276 17..771 99   Plus

BO14450.pep Sequence

Translation from 16 to 787

> BO14450.pep
MTKKESSVPTLCWGYAGIRGMFQTGRPVDPPPPLPNLRMKTNLILNYLPQ
DMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN
GMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATY
GNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPL
TVKFVEREKKGSSSTSSGSQYKDKRKSSPPPYKRRERTNDHHVSKRSRDS
DASFLDH

BO14450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5213-PA 251 CG5213-PA 1..251 1..251 1313 100 Plus
Sxl-PE 314 CG43770-PE 85..275 41..231 355 38.7 Plus
Sxl-PA 314 CG43770-PA 85..275 41..231 355 38.7 Plus
Sxl-PAB 322 CG43770-PAB 93..283 41..231 355 38.7 Plus
Sxl-PAC 331 CG43770-PAC 102..292 41..231 355 38.7 Plus