Clone Sequence Records
BO14453.3prime Sequence
599 bp (598 high quality bases) assembled on 2006-05-29
> BO14453.3prime
ATGGTCTAGAAAGCTTGCATCGTAGTACAGGTAAAAGGTGGTGCAGACTG
CAAAGTACGAGGGTCTCTCCACGCTGTAGGTCACAAATCCGTCTTTTTCA
GCATCCCACAGGAAGTTGACCATGGAGTAGAGGCCCTGCATCAGGAACTC
GCCCACAGTGACCAGCACTATGTAGCGATATCTGTCGTAGTTGTCGAGTT
TGATGCGGTTCTTGATTTCCTCGCTCACTTGCGCGGCCATGTGGAGGGAA
TGCTTGGGATGGAACATGTACTCATCGTTGTAGTGTCGGTTCATCACCGC
CTTTATGATGTTCTCCACGCGTTCCTTGTTGAGCGGATTCTTGGACTCCA
GGCGGTAGGTGGGCATGAACCGCATGGTGGGCTTGGCTGCCGGAGCACCC
ATCGGCAAGGAAACGCCCATATGGGACTTGGTCAGCGATCCGCGCTGGCT
GCTTGCCGGCCTCGGCTTAGTGCCCTCGGCCGACTTTTCTTTCTTCTCCT
TTTTGCCCTTGCCAGTTTCCGCCTCCTTGGCGGCGGTCTCTGGCACGACA
TCCTTGCTGCGCCGCTCTTCCGGTGAGTCGCCCATGTCGACTGATAACT
BO14453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PA | 570 | CG14763-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..583 | 586..19 | 2840 | 100 | Minus |
CG14763-RB | 690 | CG14763-RB | 16..583 | 586..19 | 2840 | 100 | Minus |
CG14763-RA | 647 | CG14763-RA | 16..583 | 586..19 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 182..387 | 1015 | 99.5 | Plus |
2R | 25286936 | 2R | 7966842..7967007 | 19..184 | 830 | 100 | Plus |
2R | 25286936 | 2R | 7967886..7968009 | 463..586 | 620 | 100 | Plus |
2R | 25286936 | 2R | 7967319..7967400 | 382..463 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:54:26 has no hits.
BO14453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:26 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:27 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:33:14 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 14..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:48 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 14..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:48 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7967059..7967258 | 182..381 | 100 | <- | Plus |
2R | 7966838..7967004 | 14..181 | 98 | <- | Plus |
2R | 7967319..7967399 | 382..462 | 100 | <- | Plus |
2R | 7967886..7968017 | 463..595 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:33:14 Download gff for
BO14453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854343..3854509 | 14..181 | 98 | <- | Plus |
arm_2R | 3854564..3854763 | 182..381 | 100 | <- | Plus |
arm_2R | 3854824..3854904 | 382..462 | 100 | <- | Plus |
arm_2R | 3855391..3855522 | 463..595 | 97 | | Plus |
BO14453.5prime Sequence
599 bp (598 high quality bases) assembled on 2006-05-29
> BO14453.5prime
GAAGTTATCAGTCGACATGGGCGACTCACCGGAAGAGCGGCGCAGCAAGG
ATGTCGTGCCAGAGACCGCCGCCAAGGAGGCGGAAACTGGCAAGGGCAAA
AAGGAGAAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAG
CAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGA
TGGGTGCTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGC
CTGGAGTCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAA
GGCGGTGATGAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGC
ATTCCCTCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATC
AAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGG
CGAGTTCCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATG
CTGAAAAAGACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTT
GCAGTCTGCACCACCTTTTACCTGTACTACGATGCAAGCTTTCTAGACC
BO14453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PA | 570 | CG14763-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..583 | 16..583 | 2840 | 100 | Plus |
CG14763-RB | 690 | CG14763-RB | 16..583 | 16..583 | 2840 | 100 | Plus |
CG14763-RA | 647 | CG14763-RA | 16..583 | 16..583 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 420..215 | 1015 | 99.5 | Minus |
2R | 25286936 | 2R | 7966842..7967007 | 583..418 | 830 | 100 | Minus |
2R | 25286936 | 2R | 7967886..7968009 | 139..16 | 620 | 100 | Minus |
2R | 25286936 | 2R | 7967319..7967400 | 220..139 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:42:00 has no hits.
BO14453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:27 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:28 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:42 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 7..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:05 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 7..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:05 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7966838..7967004 | 421..588 | 98 | <- | Minus |
2R | 7967059..7967258 | 221..420 | 100 | <- | Minus |
2R | 7967319..7967399 | 140..220 | 100 | <- | Minus |
2R | 7967886..7968017 | 7..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:42 Download gff for
BO14453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854343..3854509 | 421..588 | 98 | <- | Minus |
arm_2R | 3854564..3854763 | 221..420 | 100 | <- | Minus |
arm_2R | 3854824..3854904 | 140..220 | 100 | <- | Minus |
arm_2R | 3855391..3855522 | 7..139 | 97 | | Minus |
BO14453.complete Sequence
601 bp assembled on 2006-10-11
GenBank Submission: FJ633133
> BO14453.complete
GAAGTTATCAGTCGACATGGGCGACTCACCGGAAGAGCGGCGCAGCAAGG
ATGTCGTGCCAGAGACCGCCGCCAAGGAGGCGGAAACTGGCAAGGGCAAA
AAGGAGAAGAAAGAAAAGTCGGCCGAGGGCACTAAGCCGAGGCCGGCAAG
CAGCCAGCGCGGATCGCTGACCAAGTCCCATATGGGCGTTTCCTTGCCGA
TGGGTGCTCCGGCAGCCAAGCCCACCATGCGGTTCATGCCCACCTACCGC
CTGGAGTCCAAGAATCCGCTCAACAAGGAACGCGTGGAGAACATCATAAA
GGCGGTGATGAACCGACACTACAACGATGAGTACATGTTCCATCCCAAGC
ATTCCCTCCACATGGCCGCGCAAGTGAGCGAGGAAATCAAGAACCGCATC
AAACTCGACAACTACGACAGATATCGCTACATAGTGCTGGTCACTGTGGG
CGAGTTCCTGATGCAGGGCCTCTACTCCATGGTCAACTTCCTGTGGGATG
CTGAAAAAGACGGATTTGTGACCTACAGCGTGGAGAGACCCTCGTACTTT
GCAGTCTGCACCACCTTTTACCTGTACTACGATGCAAGCTTTCTAGACCA
T
BO14453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 570 | CG14763-PC | 1..567 | 17..583 | 2835 | 100 | Plus |
CG14763-RB | 570 | CG14763-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
CG14763-RA | 570 | CG14763-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-RC | 906 | CG14763-RC | 16..583 | 16..583 | 2840 | 100 | Plus |
CG14763-RB | 690 | CG14763-RB | 16..583 | 16..583 | 2840 | 100 | Plus |
CG14763-RA | 647 | CG14763-RA | 16..583 | 16..583 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7967059..7967264 | 420..215 | 1015 | 99.5 | Minus |
2R | 25286936 | 2R | 7966842..7967007 | 583..418 | 830 | 100 | Minus |
2R | 25286936 | 2R | 7967886..7968009 | 139..16 | 620 | 100 | Minus |
2R | 25286936 | 2R | 7967319..7967400 | 220..139 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:03 has no hits.
BO14453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:39 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:00 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 7..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:09 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 17..583 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:39 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 8..587 | 7..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:11 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14763-RA | 17..583 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:11 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7966840..7967004 | 421..585 | 98 | <- | Minus |
2R | 7967059..7967258 | 221..420 | 100 | <- | Minus |
2R | 7967319..7967399 | 140..220 | 100 | <- | Minus |
2R | 7967886..7968008 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:09 Download gff for
BO14453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3854345..3854509 | 421..585 | 98 | <- | Minus |
arm_2R | 3854564..3854763 | 221..420 | 100 | <- | Minus |
arm_2R | 3854824..3854904 | 140..220 | 100 | <- | Minus |
arm_2R | 3855391..3855513 | 17..139 | 100 | | Minus |
BO14453.pep Sequence
Translation from 16 to 601
> BO14453.pep
MGDSPEERRSKDVVPETAAKEAETGKGKKEKKEKSAEGTKPRPASSQRGS
LTKSHMGVSLPMGAPAAKPTMRFMPTYRLESKNPLNKERVENIIKAVMNR
HYNDEYMFHPKHSLHMAAQVSEEIKNRIKLDNYDRYRYIVLVTVGEFLMQ
GLYSMVNFLWDAEKDGFVTYSVERPSYFAVCTTFYLYYDASFLDH
BO14453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14763-PC | 189 | CG14763-PC | 1..189 | 1..189 | 993 | 100 | Plus |
CG14763-PB | 189 | CG14763-PB | 1..189 | 1..189 | 993 | 100 | Plus |
CG14763-PA | 189 | CG14763-PA | 1..189 | 1..189 | 993 | 100 | Plus |