Clone Sequence Records
BO14458.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-29
> BO14458.3prime
ATGGTCTAGAAAGCTTGCGACATCCATGTTGCGTGATCTTTTCGGCGGAC
CCCTGTCCAATGTTTGTTTGATCGACTTGAGCAGACCAGGTATCAGGTTT
ATGTACTTGTCCACACAGTTGTTCGTGCAACTCTCAAACATGTGCTGGGA
TCGGGACATGTCCCGGTCACTCGGATTGCTGGGCATCTGAGACCGCGCAT
CGCTGTTGCAATCCCTAACGCAGTTTTGAAGTCTATTCTGGAATTGGCCC
AGCTCGTGCTGCAGGAAATCCTGGGCATCCATCAGGGGACCGGCGCACTT
CTCGATGCAGTTCTGTACGCTCTCCAGCGTCCCTCGATCATCGTCGCAGC
AGCGGGCGGCACAGCGGTGCATCGTGGACTGCATTCTGCGCAAGTGGGTG
CGGTACATGTCCTCGATCATTTCGCTAATGGCGCCCTCCAAGCGCTTTTT
TTGTTGCTCCACCATGTCGACTGATAACT
BO14458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 450 | CG5327-RA | 1..447 | 465..19 | 2185 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..510 | 465..19 | 2205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616635 | 214..19 | 950 | 99 | Minus |
2R | 25286936 | 2R | 18616195..18616362 | 380..213 | 840 | 100 | Minus |
2R | 25286936 | 2R | 18616051..18616137 | 465..379 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:30:32 has no hits.
BO14458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:35 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:38 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:49 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 15..477 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:15 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 15..477 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:15 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616039..18616137 | 379..477 | 94 | -> | Minus |
2R | 18616197..18616361 | 214..378 | 100 | -> | Minus |
2R | 18616441..18616638 | 15..213 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:49 Download gff for
BO14458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503544..14503642 | 379..477 | 94 | -> | Minus |
arm_2R | 14503702..14503866 | 214..378 | 100 | -> | Minus |
arm_2R | 14503946..14504143 | 15..213 | 97 | | Minus |
BO14458.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-29
> BO14458.5prime
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCGCAAGCTTTCTAGACC
BO14458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 450 | CG5327-RA | 1..447 | 17..463 | 2185 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..510 | 17..463 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616635 | 268..463 | 950 | 99 | Plus |
2R | 25286936 | 2R | 18616195..18616362 | 102..269 | 840 | 100 | Plus |
2R | 25286936 | 2R | 18616051..18616137 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:50:03 has no hits.
BO14458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:36 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:39 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:40 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:49 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..467 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:49 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616039..18616137 | 5..103 | 94 | -> | Plus |
2R | 18616197..18616361 | 104..268 | 100 | -> | Plus |
2R | 18616441..18616638 | 269..467 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:40 Download gff for
BO14458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503544..14503642 | 5..103 | 94 | -> | Plus |
arm_2R | 14503702..14503866 | 104..268 | 100 | -> | Plus |
arm_2R | 14503946..14504143 | 269..467 | 97 | | Plus |
BO14458.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ633135
> BO14458.complete
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCGCAAGCTTTCTAGACCAT
BO14458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 450 | CG5327-PA | 1..447 | 17..463 | 2205 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-RA | 2136 | CG5327-RA | 64..510 | 17..463 | 2205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18616440..18616635 | 268..463 | 950 | 99 | Plus |
2R | 25286936 | 2R | 18616195..18616362 | 102..269 | 840 | 100 | Plus |
2R | 25286936 | 2R | 18616051..18616137 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:24:37 has no hits.
BO14458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:48 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:04 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:07 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 64..510 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:48 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 52..513 | 5..467 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:07 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5327-RA | 64..510 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:07 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18616051..18616137 | 17..103 | 100 | -> | Plus |
2R | 18616197..18616361 | 104..268 | 100 | -> | Plus |
2R | 18616441..18616635 | 269..465 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:07 Download gff for
BO14458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503702..14503866 | 104..268 | 100 | -> | Plus |
arm_2R | 14503946..14504140 | 269..465 | 97 | | Plus |
arm_2R | 14503556..14503642 | 17..103 | 100 | -> | Plus |
BO14458.pep Sequence
Translation from 16 to 481
> BO14458.pep
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDVA
SFLDH
BO14458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5327-PA | 149 | CG5327-PA | 1..149 | 1..149 | 800 | 100 | Plus |
CG5323-PA | 146 | CG5323-PA | 1..140 | 1..140 | 424 | 47.1 | Plus |
CG12661-PB | 131 | CG12661-PB | 8..130 | 2..139 | 260 | 32.6 | Plus |
CG12661-PA | 131 | CG12661-PA | 8..130 | 2..139 | 260 | 32.6 | Plus |