Clone BO14458 Report

Search the DGRC for BO14458

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG5327-RA
Protein status:BO14458.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO14458.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-29

> BO14458.3prime
ATGGTCTAGAAAGCTTGCGACATCCATGTTGCGTGATCTTTTCGGCGGAC
CCCTGTCCAATGTTTGTTTGATCGACTTGAGCAGACCAGGTATCAGGTTT
ATGTACTTGTCCACACAGTTGTTCGTGCAACTCTCAAACATGTGCTGGGA
TCGGGACATGTCCCGGTCACTCGGATTGCTGGGCATCTGAGACCGCGCAT
CGCTGTTGCAATCCCTAACGCAGTTTTGAAGTCTATTCTGGAATTGGCCC
AGCTCGTGCTGCAGGAAATCCTGGGCATCCATCAGGGGACCGGCGCACTT
CTCGATGCAGTTCTGTACGCTCTCCAGCGTCCCTCGATCATCGTCGCAGC
AGCGGGCGGCACAGCGGTGCATCGTGGACTGCATTCTGCGCAAGTGGGTG
CGGTACATGTCCTCGATCATTTCGCTAATGGCGCCCTCCAAGCGCTTTTT
TTGTTGCTCCACCATGTCGACTGATAACT

BO14458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 450 CG5327-RA 1..447 465..19 2185 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..510 465..19 2205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616635 214..19 950 99 Minus
2R 25286936 2R 18616195..18616362 380..213 840 100 Minus
2R 25286936 2R 18616051..18616137 465..379 435 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:30:32 has no hits.

BO14458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:35 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:38 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:49 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 15..477 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:15 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 15..477 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:15 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18616039..18616137 379..477 94 -> Minus
2R 18616197..18616361 214..378 100 -> Minus
2R 18616441..18616638 15..213 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:49 Download gff for BO14458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503544..14503642 379..477 94 -> Minus
arm_2R 14503702..14503866 214..378 100 -> Minus
arm_2R 14503946..14504143 15..213 97   Minus

BO14458.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-29

> BO14458.5prime
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCGCAAGCTTTCTAGACC

BO14458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 450 CG5327-RA 1..447 17..463 2185 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..510 17..463 2205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616635 268..463 950 99 Plus
2R 25286936 2R 18616195..18616362 102..269 840 100 Plus
2R 25286936 2R 18616051..18616137 17..103 435 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:50:03 has no hits.

BO14458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:36 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:39 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:40 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:49 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..467 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:49 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18616039..18616137 5..103 94 -> Plus
2R 18616197..18616361 104..268 100 -> Plus
2R 18616441..18616638 269..467 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:40 Download gff for BO14458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503544..14503642 5..103 94 -> Plus
arm_2R 14503702..14503866 104..268 100 -> Plus
arm_2R 14503946..14504143 269..467 97   Plus

BO14458.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ633135

> BO14458.complete
GAAGTTATCAGTCGACATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCG
CCATTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATG
CAGTCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGG
GACGCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGA
TGGATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGA
CTTCAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCC
CAGCAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGA
GTTGCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTG
CTCAAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACG
CAACATGGATGTCGCAAGCTTTCTAGACCAT

BO14458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 450 CG5327-PA 1..447 17..463 2205 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2136 CG5327-RA 64..510 17..463 2205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18616440..18616635 268..463 950 99 Plus
2R 25286936 2R 18616195..18616362 102..269 840 100 Plus
2R 25286936 2R 18616051..18616137 17..103 435 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:24:37 has no hits.

BO14458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:48 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:04 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..467 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:07 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 64..510 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:48 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 52..513 5..467 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:07 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 64..510 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:07 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18616051..18616137 17..103 100 -> Plus
2R 18616197..18616361 104..268 100 -> Plus
2R 18616441..18616635 269..465 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:07 Download gff for BO14458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503702..14503866 104..268 100 -> Plus
arm_2R 14503946..14504140 269..465 97   Plus
arm_2R 14503556..14503642 17..103 100 -> Plus

BO14458.pep Sequence

Translation from 16 to 481

> BO14458.pep
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDVA
SFLDH

BO14458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 149 CG5327-PA 1..149 1..149 800 100 Plus
CG5323-PA 146 CG5323-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 260 32.6 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 260 32.6 Plus