Clone Sequence Records
BO14460.3prime Sequence
913 bp (858 high quality bases) assembled on 2006-05-29
> BO14460.3prime
ATGGTCTAGAAAGCTTGCCAGTCCCTTGTTGAACCAGACAGTTTCCAATT
CCGGACGCTTCTTCCTAATGCTGTCGCGGACCTCCGACTCCAGGCTATCC
ACTTTGATGTCCGCTCGCTGCTTGAAGAAGGCGCAGCCAAGGGGCGTGGC
GAAAATCAGCACGAAGCCGCAGAAGAGCGTTTGGATGGGAGCGTTGGATC
GCGGGTATTTAGCCAGGAATCCCCTCTTTTCGAGGACATTCATCAACACC
GGTGTCAGTGTCATTCCCGGTATGGCCATGGCGATTCGACTTAGGATTAC
GGTTGAGATCCCAACAACGGCCGCCTTCTTTGAGATGCCCATTTCGTTGC
TGTGTTCATCGAAAAGCGTCACTCCGTTGCGCAGCTCTTGCATTCGCATG
CAGGGGATGTTGATGCAGTTGGCAGCTCCAACTGCCACTAGGGGGACAAG
GCGACCCAAGAGCGGATTCATGTTCTTCACTGCGTGGTTCAGGGAAAGGG
CCGTGACCAGGGCTCCGCTAGTGGCCAAACAGTACGAGGTAACTAGTTGC
TGCTGGCTGATGGGCGAGGTTCCCGAACGGTTCGTGTAGTTAACAATGGC
GTTGAATGTCTGATTGAACCACTGCCAGAAGACGACGGCGGGAGTGCTTT
TGTAGAAGGCCATCATGCCGCCGGTGATGATTGTGTTCATGGGCATCTGC
GCAGCCATGCGCCCGATGACTATCTGCTTCTCCCCGGTCTCTGGATGGAA
CGCCGAATCGTACAGGTACTTAGCGCGCCACACGTCGTCGATGGGTCTGC
ACTCGGGAACATCCTTGCCAGCCCGGTACTTTATCACAATCTGGCGGGCC
TCCCTCCACTCCGAGGCGGAAGCCAGCACATTAAGCGGGGTTGGTCAGCA
GGAAGAAGTGCTT
BO14460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PC | 966 | CG11739-RC | 188..963 | 794..19 | 3880 | 100 | Minus |
CG11739-PA | 966 | CG11739-RA | 188..963 | 794..19 | 3880 | 100 | Minus |
CG11739-PD | 966 | CG11739-RD | 188..963 | 794..19 | 3880 | 100 | Minus |
CG11739-PB | 966 | CG11739-RB | 188..963 | 794..19 | 3880 | 100 | Minus |
CG11739-PC | 966 | CG11739-RC | 129..184 | 853..798 | 280 | 100 | Minus |
CG11739-PA | 966 | CG11739-RA | 129..184 | 853..798 | 280 | 100 | Minus |
CG11739-PD | 966 | CG11739-RD | 129..184 | 853..798 | 280 | 100 | Minus |
CG11739-PB | 966 | CG11739-RB | 129..184 | 853..798 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 219..1112 | 913..19 | 4330 | 99.2 | Minus |
CG11739-RD | 1320 | CG11739-RD | 161..1054 | 913..19 | 4330 | 99.2 | Minus |
CG11739-RA | 1645 | CG11739-RA | 486..1379 | 913..19 | 4330 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4380703..4380944 | 260..19 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 4380109..4380270 | 550..389 | 810 | 100 | Minus |
3R | 32079331 | 3R | 4379674..4379825 | 819..668 | 715 | 98 | Minus |
3R | 32079331 | 3R | 4380504..4380631 | 388..261 | 640 | 100 | Minus |
3R | 32079331 | 3R | 4379927..4380046 | 669..550 | 600 | 100 | Minus |
3R | 32079331 | 3R | 4379525..4379623 | 913..814 | 360 | 93 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:41 has no hits.
BO14460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:39 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PB | 70..966 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:43 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PD | 70..966 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:36 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 486..1385 | 13..913 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:14 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 486..1385 | 13..913 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:14 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4380703..4380948 | 13..260 | 98 | -> | Minus |
3R | 4379525..4379618 | 819..913 | 94 | -> | Minus |
3R | 4379675..4379824 | 669..818 | 98 | -> | Minus |
3R | 4379928..4380045 | 551..668 | 100 | -> | Minus |
3R | 4380109..4380270 | 389..550 | 100 | -> | Minus |
3R | 4380504..4380631 | 261..388 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:36 Download gff for
BO14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205247..205340 | 819..913 | 94 | -> | Minus |
arm_3R | 205397..205546 | 669..818 | 98 | -> | Minus |
arm_3R | 205650..205767 | 551..668 | 100 | -> | Minus |
arm_3R | 205831..205992 | 389..550 | 100 | -> | Minus |
arm_3R | 206226..206353 | 261..388 | 100 | -> | Minus |
arm_3R | 206425..206670 | 13..260 | 98 | -> | Minus |
BO14460.5prime Sequence
909 bp (847 high quality bases) assembled on 2006-05-29
> BO14460.5prime
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCCTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGA
BO14460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PC | 966 | CG11739-RC | 1..893 | 17..909 | 4440 | 99.8 | Plus |
CG11739-PA | 966 | CG11739-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
CG11739-PD | 966 | CG11739-RD | 1..893 | 17..909 | 4440 | 99.8 | Plus |
CG11739-PB | 966 | CG11739-RB | 1..893 | 17..909 | 4440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 149..1042 | 16..909 | 4455 | 99.9 | Plus |
CG11739-RD | 1320 | CG11739-RD | 91..984 | 16..909 | 4455 | 99.9 | Plus |
CG11739-RA | 1645 | CG11739-RA | 416..1309 | 16..909 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4380703..4380874 | 738..909 | 845 | 99.4 | Plus |
3R | 32079331 | 3R | 4379455..4379623 | 16..184 | 830 | 99.4 | Plus |
3R | 32079331 | 3R | 4380109..4380270 | 448..609 | 810 | 100 | Plus |
3R | 32079331 | 3R | 4379674..4379825 | 179..330 | 760 | 100 | Plus |
3R | 32079331 | 3R | 4380504..4380631 | 610..737 | 640 | 100 | Plus |
3R | 32079331 | 3R | 4379927..4380046 | 329..448 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:08:58 has no hits.
BO14460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:40 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PC | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:45 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:50 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 416..1308 | 16..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:44 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 416..1308 | 16..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:44 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4380504..4380631 | 610..737 | 100 | -> | Plus |
3R | 4379444..4379618 | 5..179 | 97 | -> | Plus |
3R | 4379675..4379824 | 180..329 | 100 | -> | Plus |
3R | 4379928..4380045 | 330..447 | 100 | -> | Plus |
3R | 4380109..4380270 | 448..609 | 100 | -> | Plus |
3R | 4380703..4380873 | 738..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:50 Download gff for
BO14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205397..205546 | 180..329 | 100 | -> | Plus |
arm_3R | 205650..205767 | 330..447 | 100 | -> | Plus |
arm_3R | 205831..205992 | 448..609 | 100 | -> | Plus |
arm_3R | 206226..206353 | 610..737 | 100 | -> | Plus |
arm_3R | 205166..205340 | 5..179 | 97 | -> | Plus |
arm_3R | 206425..206595 | 738..908 | 99 | | Plus |
BO14460.complete Sequence
997 bp assembled on 2006-10-11
GenBank Submission: FJ633137
> BO14460.complete
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCTTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGAGTCGGAGGTCCGCGACAGCATTAGGAAGAAGCGTCCGGAAT
TGGAAACTGTCTGGTTCAACAAGGGACTGGCAAGCTTTCTAGACCAT
BO14460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 966 | CG11739-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
CG11739-RD | 966 | CG11739-PD | 1..963 | 17..979 | 4815 | 100 | Plus |
CG11739-RA | 966 | CG11739-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-RB | 1378 | CG11739-RB | 149..1112 | 16..979 | 4820 | 100 | Plus |
CG11739-RD | 1320 | CG11739-RD | 91..1054 | 16..979 | 4820 | 100 | Plus |
CG11739-RA | 1645 | CG11739-RA | 416..1379 | 16..979 | 4820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4380703..4380944 | 738..979 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 4379455..4379623 | 16..184 | 830 | 99.4 | Plus |
3R | 32079331 | 3R | 4380109..4380270 | 448..609 | 810 | 100 | Plus |
3R | 32079331 | 3R | 4379674..4379825 | 179..330 | 760 | 100 | Plus |
3R | 32079331 | 3R | 4380504..4380631 | 610..737 | 640 | 100 | Plus |
3R | 32079331 | 3R | 4379927..4380046 | 329..448 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:25:38 has no hits.
BO14460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:12 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:39 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 95..1057 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:33 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 417..1379 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:12 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RD | 94..1063 | 16..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:00 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11739-RA | 417..1379 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:00 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4380504..4380631 | 610..737 | 100 | -> | Plus |
3R | 4379675..4379824 | 180..329 | 100 | -> | Plus |
3R | 4379928..4380045 | 330..447 | 100 | -> | Plus |
3R | 4380109..4380270 | 448..609 | 100 | -> | Plus |
3R | 4379456..4379618 | 17..179 | 100 | -> | Plus |
3R | 4380703..4380944 | 738..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:33 Download gff for
BO14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 205831..205992 | 448..609 | 100 | -> | Plus |
arm_3R | 206226..206353 | 610..737 | 100 | -> | Plus |
arm_3R | 206425..206666 | 738..981 | 99 | | Plus |
arm_3R | 205178..205340 | 17..179 | 100 | -> | Plus |
arm_3R | 205397..205546 | 180..329 | 100 | -> | Plus |
arm_3R | 205650..205767 | 330..447 | 100 | -> | Plus |
BO14460.pep Sequence
Translation from 16 to 997
> BO14460.pep
MSPLPRVNIDEPKYDQNSYLGRAKHFFLLTNPLNVLASASKLEEARQIVI
KYRAGKDVPECKTIDDVWRAKYLYDSAFHPETGEKQIVIGRMAAQMPMNT
IITGGMMAFYKSTPAVVFWQWFNQTFNAIVNYTNRSGTSPISQQQLVTSY
CLATSGALVTALSLNHAVKNMNPLLGRLVPLVAVGAANCINIPCMRMQEL
RNGVTLFDEHSNEMGISKKAAVVGISTVILSRIAMAIPGMTLTPVLMNVL
EKRGFLAKYPRSNAPIQTLFCGFVLIFATPLGCAFFKQRADIKVDSLESE
VRDSIRKKRPELETVWFNKGLASFLDH
BO14460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11739-PB | 321 | CG11739-PB | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PD | 321 | CG11739-PD | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PA | 321 | CG11739-PA | 1..321 | 1..321 | 1657 | 100 | Plus |
CG11739-PC | 321 | CG11739-PC | 1..321 | 1..321 | 1657 | 100 | Plus |
CG6812-PA | 327 | CG6812-PA | 8..327 | 7..321 | 641 | 43 | Plus |