Clone BO14460 Report

Search the DGRC for BO14460

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG11739-RA
Protein status:BO14460.pep: validated full length
Sequenced Size:997

Clone Sequence Records

BO14460.3prime Sequence

913 bp (858 high quality bases) assembled on 2006-05-29

> BO14460.3prime
ATGGTCTAGAAAGCTTGCCAGTCCCTTGTTGAACCAGACAGTTTCCAATT
CCGGACGCTTCTTCCTAATGCTGTCGCGGACCTCCGACTCCAGGCTATCC
ACTTTGATGTCCGCTCGCTGCTTGAAGAAGGCGCAGCCAAGGGGCGTGGC
GAAAATCAGCACGAAGCCGCAGAAGAGCGTTTGGATGGGAGCGTTGGATC
GCGGGTATTTAGCCAGGAATCCCCTCTTTTCGAGGACATTCATCAACACC
GGTGTCAGTGTCATTCCCGGTATGGCCATGGCGATTCGACTTAGGATTAC
GGTTGAGATCCCAACAACGGCCGCCTTCTTTGAGATGCCCATTTCGTTGC
TGTGTTCATCGAAAAGCGTCACTCCGTTGCGCAGCTCTTGCATTCGCATG
CAGGGGATGTTGATGCAGTTGGCAGCTCCAACTGCCACTAGGGGGACAAG
GCGACCCAAGAGCGGATTCATGTTCTTCACTGCGTGGTTCAGGGAAAGGG
CCGTGACCAGGGCTCCGCTAGTGGCCAAACAGTACGAGGTAACTAGTTGC
TGCTGGCTGATGGGCGAGGTTCCCGAACGGTTCGTGTAGTTAACAATGGC
GTTGAATGTCTGATTGAACCACTGCCAGAAGACGACGGCGGGAGTGCTTT
TGTAGAAGGCCATCATGCCGCCGGTGATGATTGTGTTCATGGGCATCTGC
GCAGCCATGCGCCCGATGACTATCTGCTTCTCCCCGGTCTCTGGATGGAA
CGCCGAATCGTACAGGTACTTAGCGCGCCACACGTCGTCGATGGGTCTGC
ACTCGGGAACATCCTTGCCAGCCCGGTACTTTATCACAATCTGGCGGGCC
TCCCTCCACTCCGAGGCGGAAGCCAGCACATTAAGCGGGGTTGGTCAGCA
GGAAGAAGTGCTT

BO14460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PC 966 CG11739-RC 188..963 794..19 3880 100 Minus
CG11739-PA 966 CG11739-RA 188..963 794..19 3880 100 Minus
CG11739-PD 966 CG11739-RD 188..963 794..19 3880 100 Minus
CG11739-PB 966 CG11739-RB 188..963 794..19 3880 100 Minus
CG11739-PC 966 CG11739-RC 129..184 853..798 280 100 Minus
CG11739-PA 966 CG11739-RA 129..184 853..798 280 100 Minus
CG11739-PD 966 CG11739-RD 129..184 853..798 280 100 Minus
CG11739-PB 966 CG11739-RB 129..184 853..798 280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 219..1112 913..19 4330 99.2 Minus
CG11739-RD 1320 CG11739-RD 161..1054 913..19 4330 99.2 Minus
CG11739-RA 1645 CG11739-RA 486..1379 913..19 4330 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4380703..4380944 260..19 1210 100 Minus
3R 32079331 3R 4380109..4380270 550..389 810 100 Minus
3R 32079331 3R 4379674..4379825 819..668 715 98 Minus
3R 32079331 3R 4380504..4380631 388..261 640 100 Minus
3R 32079331 3R 4379927..4380046 669..550 600 100 Minus
3R 32079331 3R 4379525..4379623 913..814 360 93 Minus
Blast to na_te.dros performed on 2015-02-12 03:49:41 has no hits.

BO14460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:39 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PB 70..966 16..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:43 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PD 70..966 16..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:36 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 486..1385 13..913 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:14 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 486..1385 13..913 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:14 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4380703..4380948 13..260 98 -> Minus
3R 4379525..4379618 819..913 94 -> Minus
3R 4379675..4379824 669..818 98 -> Minus
3R 4379928..4380045 551..668 100 -> Minus
3R 4380109..4380270 389..550 100 -> Minus
3R 4380504..4380631 261..388 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:36 Download gff for BO14460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205247..205340 819..913 94 -> Minus
arm_3R 205397..205546 669..818 98 -> Minus
arm_3R 205650..205767 551..668 100 -> Minus
arm_3R 205831..205992 389..550 100 -> Minus
arm_3R 206226..206353 261..388 100 -> Minus
arm_3R 206425..206670 13..260 98 -> Minus

BO14460.5prime Sequence

909 bp (847 high quality bases) assembled on 2006-05-29

> BO14460.5prime
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCCTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGA

BO14460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PC 966 CG11739-RC 1..893 17..909 4440 99.8 Plus
CG11739-PA 966 CG11739-RA 1..893 17..909 4440 99.8 Plus
CG11739-PD 966 CG11739-RD 1..893 17..909 4440 99.8 Plus
CG11739-PB 966 CG11739-RB 1..893 17..909 4440 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 149..1042 16..909 4455 99.9 Plus
CG11739-RD 1320 CG11739-RD 91..984 16..909 4455 99.9 Plus
CG11739-RA 1645 CG11739-RA 416..1309 16..909 4455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4380703..4380874 738..909 845 99.4 Plus
3R 32079331 3R 4379455..4379623 16..184 830 99.4 Plus
3R 32079331 3R 4380109..4380270 448..609 810 100 Plus
3R 32079331 3R 4379674..4379825 179..330 760 100 Plus
3R 32079331 3R 4380504..4380631 610..737 640 100 Plus
3R 32079331 3R 4379927..4380046 329..448 600 100 Plus
Blast to na_te.dros performed on 2015-02-09 11:08:58 has no hits.

BO14460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:40 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PC 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:45 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-PB 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:50 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 416..1308 16..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:44 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 416..1308 16..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:44 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4380504..4380631 610..737 100 -> Plus
3R 4379444..4379618 5..179 97 -> Plus
3R 4379675..4379824 180..329 100 -> Plus
3R 4379928..4380045 330..447 100 -> Plus
3R 4380109..4380270 448..609 100 -> Plus
3R 4380703..4380873 738..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:50 Download gff for BO14460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205397..205546 180..329 100 -> Plus
arm_3R 205650..205767 330..447 100 -> Plus
arm_3R 205831..205992 448..609 100 -> Plus
arm_3R 206226..206353 610..737 100 -> Plus
arm_3R 205166..205340 5..179 97 -> Plus
arm_3R 206425..206595 738..908 99   Plus

BO14460.complete Sequence

997 bp assembled on 2006-10-11

GenBank Submission: FJ633137

> BO14460.complete
GAAGTTATCAGTCGACATGAGCCCTCTCCCACGAGTCAACATCGACGAGC
CGAAATATGATCAGAACTCCTACTTGGGCAGAGCCAAGCACTTCTTCCTG
CTGACCAACCCGCTTAATGTGCTGGCCTCCGCCTCGAAGTTGGAGGAGGC
CCGCCAGATTGTGATAAAGTACCGGGCTGGCAAGGATGTTCCCGAGTGCA
AGACCATCGACGACGTGTGGCGCGCTAAGTACCTGTACGATTCGGCGTTC
CATCCAGAGACCGGGGAGAAGCAGATAGTCATCGGGCGCATGGCTGCGCA
GATGCCCATGAACACAATCATCACCGGCGGCATGATGGCCTTCTACAAAA
GCACTCCCGCCGTCGTCTTCTGGCAGTGGTTCAATCAGACATTCAACGCC
ATTGTTAACTACACGAACCGTTCGGGAACCTCGCCCATCAGCCAGCAGCA
ACTAGTTACCTCGTACTGTTTGGCCACTAGCGGAGCCCTGGTCACGGCCC
TTTCCCTGAACCACGCAGTGAAGAACATGAATCCGCTCTTGGGTCGCCTT
GTCCCCCTAGTGGCAGTTGGAGCTGCCAACTGCATCAACATCCCCTGCAT
GCGAATGCAAGAGCTGCGCAACGGAGTGACGCTTTTCGATGAACACAGCA
ACGAAATGGGCATCTCAAAGAAGGCGGCCGTTGTTGGGATCTCAACCGTA
ATCCTAAGTCGAATCGCCATGGCCATACCGGGAATGACACTGACACCGGT
GTTGATGAATGTCCTCGAAAAGAGGGGATTCCTGGCTAAATACCCGCGAT
CCAACGCTCCCATCCAAACGCTCTTCTGCGGCTTCGTGCTGATTTTCGCC
ACGCCCCTTGGCTGCGCCTTCTTCAAGCAGCGAGCGGACATCAAAGTGGA
TAGCCTGGAGTCGGAGGTCCGCGACAGCATTAGGAAGAAGCGTCCGGAAT
TGGAAACTGTCTGGTTCAACAAGGGACTGGCAAGCTTTCTAGACCAT

BO14460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 966 CG11739-PB 1..963 17..979 4815 100 Plus
CG11739-RD 966 CG11739-PD 1..963 17..979 4815 100 Plus
CG11739-RA 966 CG11739-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-RB 1378 CG11739-RB 149..1112 16..979 4820 100 Plus
CG11739-RD 1320 CG11739-RD 91..1054 16..979 4820 100 Plus
CG11739-RA 1645 CG11739-RA 416..1379 16..979 4820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4380703..4380944 738..979 1210 100 Plus
3R 32079331 3R 4379455..4379623 16..184 830 99.4 Plus
3R 32079331 3R 4380109..4380270 448..609 810 100 Plus
3R 32079331 3R 4379674..4379825 179..330 760 100 Plus
3R 32079331 3R 4380504..4380631 610..737 640 100 Plus
3R 32079331 3R 4379927..4380046 329..448 600 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:25:38 has no hits.

BO14460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:12 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 1..966 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:39 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 95..1057 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:33 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 417..1379 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:12 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RD 94..1063 16..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:00 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG11739-RA 417..1379 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:00 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4380504..4380631 610..737 100 -> Plus
3R 4379675..4379824 180..329 100 -> Plus
3R 4379928..4380045 330..447 100 -> Plus
3R 4380109..4380270 448..609 100 -> Plus
3R 4379456..4379618 17..179 100 -> Plus
3R 4380703..4380944 738..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:33 Download gff for BO14460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 205831..205992 448..609 100 -> Plus
arm_3R 206226..206353 610..737 100 -> Plus
arm_3R 206425..206666 738..981 99   Plus
arm_3R 205178..205340 17..179 100 -> Plus
arm_3R 205397..205546 180..329 100 -> Plus
arm_3R 205650..205767 330..447 100 -> Plus

BO14460.pep Sequence

Translation from 16 to 997

> BO14460.pep
MSPLPRVNIDEPKYDQNSYLGRAKHFFLLTNPLNVLASASKLEEARQIVI
KYRAGKDVPECKTIDDVWRAKYLYDSAFHPETGEKQIVIGRMAAQMPMNT
IITGGMMAFYKSTPAVVFWQWFNQTFNAIVNYTNRSGTSPISQQQLVTSY
CLATSGALVTALSLNHAVKNMNPLLGRLVPLVAVGAANCINIPCMRMQEL
RNGVTLFDEHSNEMGISKKAAVVGISTVILSRIAMAIPGMTLTPVLMNVL
EKRGFLAKYPRSNAPIQTLFCGFVLIFATPLGCAFFKQRADIKVDSLESE
VRDSIRKKRPELETVWFNKGLASFLDH

BO14460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11739-PB 321 CG11739-PB 1..321 1..321 1657 100 Plus
CG11739-PD 321 CG11739-PD 1..321 1..321 1657 100 Plus
CG11739-PA 321 CG11739-PA 1..321 1..321 1657 100 Plus
CG11739-PC 321 CG11739-PC 1..321 1..321 1657 100 Plus
CG6812-PA 327 CG6812-PA 8..327 7..321 641 43 Plus