Clone Sequence Records
BO14463.3prime Sequence
769 bp (766 high quality bases) assembled on 2006-05-29
> BO14463.3prime
ATGGTCTAGAAAGCTTGCAAATGTTTGGTACTTCAGGGCCTGTCGCAGGG
TCATGCAGTCGACCTCGTCGATCTTGCAGGTGTTCGCCTTGATGTTGATC
TCCTCCTCCTGCATCACCTGGACGTGCATCAGGTAGCGCATGGATGCCTT
GTTCTCGTTCAGCTTCTGATTGAGCTTGCATACGGATGCCTTCAGCGCCT
GCAGTTCGTTGTAAAGCGCATCCTGGACCATGTCGCAGGTCAGCTCCAGG
CCAGGACGATGGGCGCGATTGCTGAGCCGCGTCTGGCACAGTGTAATGGC
CCGCTGCTTGTCCATCATCTCCTTCTCCAGCTCGGTCATGTTGCGCTGCA
CCTGATGGATGTGATCCATGGTGTCCTTGTGCTTGTTCTCCAAACACTGT
TTCACGTGCTTCGTCTCCGAGATCCTTCGCTCGAAGGCCTCGTTGGTCCT
GTCCGTCTGGTTCTGCATATCCTCGCACACCTGCTTCAGCAGCAAATCGA
TGTAGGCCCGCAGCTGACCGGCGGACACCAGCGCCTTGGCGTTGGCCTCC
AGATTCTCGTACGTCTGCGCCTGCCACTCGGTCAGCGAAAATTGGCAATG
CTGTTTGGACAAATCCTGTCCCTTAGCCAGGTCGTGCTGGAACTCCTTGA
GCTTCAGGTTCTTCTCGTCGATGGCCAGTGACTTATCCTTGGCGGCCAAA
TCCTGATCGAGCAGATAGATGGCGGCCCGCAGCTTGCGGATCTGCTCCTC
GGCTTCCTTGAGGGCGGCA
BO14463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10541-PA | 1266 | Tektin-C-RA | 513..1263 | 769..19 | 3630 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-C-RD | 1613 | CG10541-RD | 701..1451 | 769..19 | 3680 | 99.3 | Minus |
Tektin-C-RC | 1549 | CG10541-RC | 637..1387 | 769..19 | 3680 | 99.3 | Minus |
Tektin-C-RA | 1524 | CG10541-RA | 612..1362 | 769..19 | 3680 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5794567..5795144 | 19..596 | 2860 | 99.7 | Plus |
3L | 28110227 | 3L | 5795549..5795722 | 596..769 | 825 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:28:43 has no hits.
BO14463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:43 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10541-PA | 514..1266 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:49 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10541-PA | 514..1266 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:26 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 613..1362 | 19..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:14 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 613..1362 | 19..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:14 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5794567..5795143 | 19..595 | 99 | <- | Plus |
3L | 5795549..5795721 | 596..768 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:26 Download gff for
BO14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5787667..5788243 | 19..595 | 99 | <- | Plus |
arm_3L | 5788649..5788821 | 596..768 | 98 | | Plus |
BO14463.5prime Sequence
923 bp (750 high quality bases) assembled on 2006-05-29
> BO14463.5prime
GAAGTTATCAGTCGACATGTTGCCCAACCTGAAGTCGCGCCGCATCAGCG
GCCTGCAGCTGGCCGGGAAGCACCTGGGTCCGGTGGCCAAGTGCCCGCCC
AGATATTCCGAGGAGGACTGGGACTATAACAACAAGATCAAGTTTCGAAT
CACCTGCGACCAGGAGAAGCTGGCGGAGCGGATCGTGGAGGAGTCGCGTC
GCGTGGTGGACGAAACGAAGGACACCACCAAGAACTGGCAACGGGAGGTG
GAGCACCATATGCGCGAACGGACGAGCGAAATCCGATTCCTGGTGGACGA
GTTGAATCGCCAGAAGAAGACCGCCGCCCTGGAGGATGAGGCCTTGAACA
CCTATCGCAATCGCGTGCTGAACTGCATCGAGTTCCTGAAGGACAAGTCG
CTGGCCATTTGCAAGCAGTGCCTGATCCTACGCGAAGGTCGGATCGGTGT
GGATTTGTGCGACGACGAGGTGGACCGCTCGCTGCGCCGTGAGCTCAAGG
TGATCAAGGGCTGTCAGGGATTGGCCGATGCCGCCCTCAAGGAAGCCGAG
GAGCAGATCCGCAAGCTGCGCGCCGCCATCTATCTGCTCGATCAGGATTT
GGCCGCCAAGGATAAGTCACTGGCCATCGACGAGAAGAACCTGAAGCTCA
AGGAGTTCCAGCACGACCTGGCTAAGGGACAGGATTTGTCCAAACAGCAT
TGCCAATTTTCGCTGACCGAGTGGCAGGCGCAAACGTACGAGAATCTGGA
GGCCAACGCCAAGGCGCTGGTGTCCGCCGGTCAGCTGCGGGCCTACATCG
ATTTGCTGCTGAAGCAGGTGTGCGAGGATATGCAGAACCAGACGGACAGG
ACCAACGAGGCCTTCGAGCGAAGGATCTCGGAAACGAAGCACGTGAAACA
GGGTTTGGAGAACAAGCACAAGG
BO14463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10541-PA | 1266 | Tektin-C-RA | 1..907 | 17..923 | 4310 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-C-RD | 1613 | CG10541-RD | 187..1095 | 15..923 | 4410 | 99 | Plus |
Tektin-C-RC | 1549 | CG10541-RC | 123..1031 | 15..923 | 4410 | 99 | Plus |
Tektin-C-RA | 1524 | CG10541-RA | 98..1006 | 15..923 | 4410 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5795549..5796061 | 702..190 | 2505 | 99.2 | Minus |
3L | 28110227 | 3L | 5794923..5795144 | 923..702 | 1035 | 97.7 | Minus |
3L | 28110227 | 3L | 5796129..5796304 | 190..15 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:26:22 has no hits.
BO14463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:44 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10541-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:50 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10541-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:40 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 94..1006 | 10..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:17 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 94..1006 | 10..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:17 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5794923..5795143 | 703..923 | 97 | <- | Minus |
3L | 5795549..5796061 | 190..702 | 99 | <- | Minus |
3L | 5796130..5796308 | 10..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:40 Download gff for
BO14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5788023..5788243 | 703..923 | 97 | <- | Minus |
arm_3L | 5788649..5789161 | 190..702 | 99 | <- | Minus |
arm_3L | 5789230..5789408 | 10..189 | 98 | | Minus |
BO14463.complete Sequence
1297 bp assembled on 2006-10-11
GenBank Submission: FJ633138
> BO14463.complete
GAAGTTATCAGTCGACATGTTGCCCAACCTGAAGTCGCGCCGCATCAGCG
GCCTGCAGCTGGCCGGGAAGCACCTGGGTCCGGTGGCCAAGTGCCCGCCC
AGATATTCCGAGGAGGACTGGGACTATAACAACAAGATCAAGTTTCGAAT
CACCTGCGACCAGGAGAAGCTGGCGGAGCGGATCGTGGAGGAGTCGCGTC
GCGTGGTGGACGAAACGAAGGACACCACCAAGAACTGGCAACGGGAGGTG
GAGCACCATATGCGCGAACGGACGAGCGAAATCCGATTCCTGGTGGACGA
GTTGAATCGCCAGAAGAAGACCGCCGCCCTGGAGGATGAGGCCTTGAACA
CCTATCGCAATCGCGTGCTGAACTGCATCGAGTTCCTGAAGGACAAGTCG
CTGGCCATTTGCAAGCAGTGCCTGATCCTACGCGAAGGTCGGATCGGTGT
GGATTTGTGCGACGACGAGGTGGACCGCTCGCTGCGCCGTGAGCTCAAGG
TGATCAAGGGCTGTCAGGGATTGGCCGATGCCGCCCTCAAGGAAGCCGAG
GAGCAGATCCGCAAGCTGCGCGCCGCCATCTATCTGCTCGATCAGGATTT
GGCCGCCAAGGATAAGTCACTGGCCATCGACGAGAAGAACCTGAAGCTCA
AGGAGTTCCAGCACGACCTGGCTAAGGGACAGGATTTGTCCAAACAGCAT
TGCCAATTTTCGCTGACCGAGTGGCAGGCGCAGACGTACGAGAATCTGGA
GGCCAACGCCAAGGCGCTGGTGTCCGCCGGTCAGCTGCGGGCCTACATCG
ATTTGCTGCTGAAGCAGGTGTGCGAGGATATGCAGAACCAGACGGACAGG
ACCAACGAGGCCTTCGAGCGAAGGATCTCGGAGACGAAGCACGTGAAACA
GTGTTTGGAGAACAAGCACAAGGACACCATGGATCACATCCATCAGGTGC
AGCGCAACATGACCGAGCTGGAGAAGGAGATGATGGACAAGCAGCGGGCC
ATTACACTGTGCCAGACGCGGCTCAGCAATCGCGCCCATCGTCCTGGCCT
GGAGCTGACCTGCGACATGGTCCAGGATGCGCTTTACAACGAACTGCAGG
CGCTGAAGGCATCCGTATGCAAGCTCAATCAGAAGCTGAACGAGAACAAG
GCATCCATGCGCTACCTGATGCACGTCCAGGTGATGCAGGAGGAGGAGAT
CAACATCAAGGCGAACACCTGCAAGATCGACGAGGTCGACTGCATGACCC
TGCGACAGGCCCTGAAGTACCAAACATTTGCAAGCTTTCTAGACCAT
BO14463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-C-RD | 1266 | CG10541-PD | 1..1263 | 17..1279 | 6225 | 99.5 | Plus |
Tektin-C-RC | 1266 | CG10541-PC | 1..1263 | 17..1279 | 6225 | 99.5 | Plus |
Tektin-C-RA | 1266 | CG10541-PA | 1..1263 | 17..1279 | 6225 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-C-RD | 1613 | CG10541-RD | 187..1451 | 15..1279 | 6235 | 99.5 | Plus |
Tektin-C-RC | 1549 | CG10541-RC | 123..1387 | 15..1279 | 6235 | 99.5 | Plus |
Tektin-C-RA | 1524 | CG10541-RA | 98..1362 | 15..1279 | 6235 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5794567..5795144 | 1279..702 | 2860 | 99.7 | Minus |
3L | 28110227 | 3L | 5795549..5796061 | 702..190 | 2505 | 99.2 | Minus |
3L | 28110227 | 3L | 5796129..5796304 | 190..15 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:04:19 has no hits.
BO14463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:14 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RB | 142..1413 | 10..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:42 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RB | 142..1410 | 10..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:42 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 105..1362 | 22..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:14 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RB | 142..1410 | 10..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:56 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tektin-C-RA | 105..1362 | 22..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:56 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5794565..5795143 | 703..1281 | 99 | <- | Minus |
3L | 5795549..5796061 | 190..702 | 99 | <- | Minus |
3L | 5796130..5796297 | 22..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:42 Download gff for
BO14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5787665..5788243 | 703..1281 | 99 | <- | Minus |
arm_3L | 5788649..5789161 | 190..702 | 99 | <- | Minus |
arm_3L | 5789230..5789397 | 22..189 | 100 | | Minus |
BO14463.pep Sequence
Translation from 16 to 1297
> BO14463.pep
MLPNLKSRRISGLQLAGKHLGPVAKCPPRYSEEDWDYNNKIKFRITCDQE
KLAERIVEESRRVVDETKDTTKNWQREVEHHMRERTSEIRFLVDELNRQK
KTAALEDEALNTYRNRVLNCIEFLKDKSLAICKQCLILREGRIGVDLCDD
EVDRSLRRELKVIKGCQGLADAALKEAEEQIRKLRAAIYLLDQDLAAKDK
SLAIDEKNLKLKEFQHDLAKGQDLSKQHCQFSLTEWQAQTYENLEANAKA
LVSAGQLRAYIDLLLKQVCEDMQNQTDRTNEAFERRISETKHVKQCLENK
HKDTMDHIHQVQRNMTELEKEMMDKQRAITLCQTRLSNRAHRPGLELTCD
MVQDALYNELQALKASVCKLNQKLNENKASMRYLMHVQVMQEEEINIKAN
TCKIDEVDCMTLRQALKYQTFASFLDH
BO14463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tektin-C-PD | 421 | CG10541-PD | 1..421 | 1..421 | 2176 | 100 | Plus |
Tektin-C-PC | 421 | CG10541-PC | 1..421 | 1..421 | 2176 | 100 | Plus |
Tektin-C-PA | 421 | CG10541-PA | 1..421 | 1..421 | 2176 | 100 | Plus |
CG32820-PB | 520 | CG32820-PB | 125..511 | 29..415 | 375 | 26.2 | Plus |
CG32819-PB | 520 | CG32819-PB | 125..511 | 29..415 | 375 | 26.2 | Plus |