Clone Sequence Records
BO14466.3prime Sequence
825 bp (732 high quality bases) assembled on 2006-05-29
> BO14466.3prime
ATGGTCTAGAAAGCTTGCCGTTTCTTTAATCTTCGCATCCAATCCGGCCA
CCATAAGATCGGCTTTATCGATGCGACCCTCGCTGGCGCGAACTTCCAGT
CGATCGGCATTGTGGTTGACATTCCAGAGTTCGGGCAAAAAGCGGGGCTG
CATTGTGTGCAGAAAGTGCTGCCGCCATAAGCGCTCCAGCTCCACCAGGC
CGCCGAAATGATCGCGATATTGCTGCACCACCCGCTCGCCATGCTGACAG
TAGTCGGAGTTTTCTACGCGATATTCCACGCTGGCTGCTTGCCGCAGGAG
ATCTTCTGTGATGTCCGTTTGATCGGAGTAGTAATCGAGGAGAGTCTTTT
CCATTTCGGCCTTCTTTGCAGCGGGTATTTTCGCGCCATGATGAAGTAGT
GCCTTGCCAGCGGATTGGACTCGTTTGAGCTGCGGATCATCATGGTACTT
GACAGATCCGTCTTCCTGCTTGAAAGGAGCTTCGCACTGCACGGCCAGTT
TGCTGCGAACCCTTAGATCCGAGATGTTGCTTAGCTGGTGGCAGGTTGGG
CACAGGAGCAGCACATCGTCGGAGGTGTGAGATTTCATGACCAATGGGAA
ATGCTTTCTGTATTCCCGCGGTACCACGTTCTTCCGAATGTACGCATCCC
GGTCACCACACACCACGCACTGGTTTTTCTTGATTGTTTGATAGAAGCGC
CCCACATCTCCGACCGCTCGACCCGCTGGCTCGAAGTTAAGGCGGACAGT
GAAGGGCTCTTCGCTTATATGCGCGCCCAGATTTTGATTGAGATACCAGG
ACGCCTTGCGCCCGTCAATTGTACA
BO14466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PA | 1752 | CG6744-RA | 943..1749 | 825..19 | 3985 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 974..1780 | 825..19 | 4005 | 99.8 | Minus |
| CG6744-RA | 1947 | CG6744-RA | 1070..1876 | 825..19 | 4005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11433559..11433964 | 19..424 | 2030 | 100 | Plus |
| 3R | 32079331 | 3R | 11434172..11434572 | 425..825 | 1975 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:23:55 has no hits.
BO14466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:50 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 944..1752 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:58 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 944..1752 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:11 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 1071..1882 | 13..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:17:52 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 1071..1882 | 13..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:17:52 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11433553..11433964 | 13..424 | 99 | <- | Plus |
| 3R | 11434172..11434571 | 425..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:11 Download gff for
BO14466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7259275..7259686 | 13..424 | 99 | <- | Plus |
| arm_3R | 7259894..7260293 | 425..824 | 99 | | Plus |
BO14466.5prime Sequence
829 bp (828 high quality bases) assembled on 2006-05-29
> BO14466.5prime
GAAGTTATCAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAA
ATTGGGCGATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGG
CACAGGCACCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAG
CCTGGTGCCCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGA
CCACGCAATGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAA
GTCCTTGGATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCC
AGTGGCCTTGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCC
GACTGTGCCATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAG
GACGATTCCGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAA
ACTTTCGCACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCT
TCCTCTGCGTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCC
AAAACTCACCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTC
CAACTGGGAGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCA
ACGACGCACTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTG
CAGCCAAAACACTTTTGGCAACGAAGGCAACTGGACGACAATAGCATGCA
CAACAAATTCGAACCCTTTCTCGACGTGGACTTCACGAAAGGCTTCACAC
TCAACCCGTCCGGCAGCGGAGTAACTCGT
BO14466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PA | 1752 | CG6744-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..844 | 17..829 | 4065 | 100 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..940 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434702..11435299 | 829..232 | 2990 | 100 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 231..17 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:46:51 has no hits.
BO14466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:51 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:00 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:57 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..940 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:24:44 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..940 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:24:44 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11434702..11435299 | 232..829 | 100 | <- | Minus |
| 3R | 11435362..11435576 | 17..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:57 Download gff for
BO14466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7260424..7261021 | 232..829 | 100 | <- | Minus |
| arm_3R | 7261084..7261298 | 17..231 | 100 | | Minus |
BO14466.complete Sequence
1783 bp assembled on 2008-11-10
GenBank Submission: KX795469
> BO14466.complete
GAAGTTATCAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAA
ATTGGGCGATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGG
CACAGGCACCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAG
CCTGGTGCCCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGA
CCACGCAATGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAA
GTCCTTGGATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCC
AGTGGCCTTGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCC
GACTGTGCCATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAG
GACGATTCCGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAA
ACTTTCGCACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCT
TCCTCTGCGTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCC
AAAACTCACCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTC
CAACTGGGAGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCA
ACGACGCACTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTG
CAGCCAAAACACTTTTGGCAACGAAGGCAACTGGACGACAATAGCATGCA
CAACAAATTCGAACCCTTTCTCGACGTGGACTTCACGAAAGGCTTCACAC
TCAACCCGTCCGGCAGCGGAGTAACTCGTTCAAAGGGCTCCACCCAATCC
AAAAGCAATAAATGGGTGCCCAAGAAGCAACCGTACCGGCAAATAGCTAC
CCGAACCAAAGACTTCTACGATAACTGCCTGCTGCAGGCGCCCGATGGCG
AACTCCTGTGTACAATTGACAGGCGCAAGGCGTCCTGGTATCTCAATCAA
AATCTGGGCACGCATATAAGCGAAGAGCCCTTCACTGTCCGCCTTAACTT
CGAGCCAGCGGGTCGAGCGGTCGGAGATGTGGGGCGCTTCTATCAAACAA
TCAAGAAAAACCAGTGCGTGGTGTGTGGTGACCGGGATGCGTACATTCGG
AAGAACGTGGTACCGCGGGAATACAGAAAGCATTTCCCATTGGTCATGAA
ATCTCACACCTCCGACGATGTGCTGCTCCTGTGCCCAACCTGCCACCAGC
TAAGCAACATCTCGGATCTAAGGGTTCGCAGCAAACTGGCCGTGCAGTGC
GAAGCTCCTTTCAAGCAGGAAGACGGATCTGTCAAGTACCATGATGATCC
GCAGCTCAAACGAGTCCAATCCGCTGGCAAGGCACTACTTCATCATGGCG
CGAAAATACCCGCTGCAAAGAAGGCCGAAATGGAAAAGACTCTCCTCGAT
TACTACTCCGATCAAACGGACATCACAGAAGATCTCCTGCGGCAAGCAGC
CAGCGTGGAATATCGCGTAGAAAACTCCGACTACTGTCAGCATGGCGAGC
GGGTGGTGCAGCAATATCGCGATCATTTCGGCGGCCTGGTGGAGCTGGAG
CGCTTATGGCGGCAGCACTTTCTGCACACAATGCAGCCCCGCTTTTTGCC
CGAACTCTGGAATGTCAACCACAATGCCGATCGACTGGAAGTTCGCGCCA
GCGAGGGTCGCATCGATAAAGCCGATCTTATGGTGGCCGGATTGGATGCG
AAGATTAAAGAAACGGCAAGCTTTCTAGACCAT
BO14466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1752 | CG6744-PB | 1..1749 | 17..1765 | 8745 | 100 | Plus |
| CG6744-RA | 1752 | CG6744-PA | 1..1749 | 17..1765 | 8745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..1780 | 17..1765 | 8745 | 100 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..1876 | 17..1765 | 8745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434172..11435299 | 1359..232 | 5640 | 100 | Minus |
| 3R | 32079331 | 3R | 11433559..11433964 | 1765..1360 | 2030 | 100 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 231..17 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:01 has no hits.
BO14466.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:15 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1882 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:47 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1876 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:25 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1876 | 17..1767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:34 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1876 | 17..1767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:34 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11435362..11435576 | 17..231 | 100 | | Minus |
| 3R | 11433556..11433964 | 1360..1767 | 99 | <- | Minus |
| 3R | 11434172..11435299 | 232..1359 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:47 Download gff for
BO14466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7259278..7259686 | 1360..1767 | 99 | <- | Minus |
| arm_3R | 7259894..7261021 | 232..1359 | 100 | <- | Minus |
| arm_3R | 7261084..7261298 | 17..231 | 100 | | Minus |
BO14466.pep Sequence
Translation from 16 to 1783
> BO14466.pep
MTRESAVATKRNWAILAAGVGLVYVLVRHRHRLLCPLRRVWSFGSLVPQR
RIEVINSVQDPTTQWVLNELKNHCQTFKVLGFDCEWITVGGSRRPVALLQ
LSSHRGLCALFRLCHMKQIPQDLRELLEDDSVIKVGVAPQEDAMKLSHDY
GVGVASTLDLRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAK
TLEPKQLDYAANDALMAVAIYQKLCRDLQPKHFWQRRQLDDNSMHNKFEP
FLDVDFTKGFTLNPSGSGVTRSKGSTQSKSNKWVPKKQPYRQIATRTKDF
YDNCLLQAPDGELLCTIDRRKASWYLNQNLGTHISEEPFTVRLNFEPAGR
AVGDVGRFYQTIKKNQCVVCGDRDAYIRKNVVPREYRKHFPLVMKSHTSD
DVLLLCPTCHQLSNISDLRVRSKLAVQCEAPFKQEDGSVKYHDDPQLKRV
QSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDLLRQAASVEYR
VENSDYCQHGERVVQQYRDHFGGLVELERLWRQHFLHTMQPRFLPELWNV
NHNADRLEVRASEGRIDKADLMVAGLDAKIKETASFLDH
BO14466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-PB | 583 | CG6744-PB | 1..583 | 1..583 | 3109 | 100 | Plus |
| CG6744-PA | 583 | CG6744-PA | 1..583 | 1..583 | 3109 | 100 | Plus |
