Clone BO14468 Report

Search the DGRC for BO14468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptSsl-RA
Protein status:BO14468.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO14468.3prime Sequence

689 bp (688 high quality bases) assembled on 2006-05-29

> BO14468.3prime
ATGGTCTAGAAAGCTTGCAAAATTCGGGACATTCCTTAGCCAGGAGGGGG
ACTTGCTGACCGAGGATTCGACCTTTATTGGCGGGGACTCTGCTGATTCG
GGCGGCATCAGGGCCTTCTTGTGCAACTGGAAGCCATAGATACGGGGGAT
GTACTTCTCCACGGGCGGAGAGGGTATCAAGCTCGGCAGCTGCATAAAGA
ACATATGCGGGAAGCTGGTCCCGAACATGGCTCCGTCCAGCATTCCATTG
TGGGGTAGCGGGATGTAGACGTTGTTACAGCTAGGGCAATAGATCTTAAC
TTGGGCCTTGTCCCACACGTCGTGAAGGCCCACTGGCAGGACTTTCTGCC
TCTTACAAAAGACTCTCGGACACGATCCGAAGTCCCCCCTTTCGTACTTT
AATCGCATATCTTCAATGCCACGCGGCGAAACGATGTACCGTGCATGGAT
CATGCCATACAGCTTCTTCTCTTCGGCGCAGTCCCAGTCCTCGTTGTCGA
ACTCCGGATCTAAGACTACCTCCAGTGTCTGGCTATCGAACTCCAGGCCC
GTCAGATTGAACTTGTCCTGGATGTATTCATTGGGCACCCGGCAGGAGAA
TTCGTGGCCCTTGATTCCCAGGAACCAATCGATCCAACTGCCATCTGGTA
TCTCGATGCTCCTGGGACACGACATGTCGACTGATAACT

BO14468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13591-PA 660 Ssl-RA 1..657 675..19 3235 99.6 Minus
CG13591-PB 660 Ssl-RB 1..657 675..19 3235 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl-RA 908 CG13591-RA 75..732 676..19 3260 99.7 Minus
CG40635-RB 264 CG40635-RB 33..264 646..418 270 75 Minus
SteXh:CG42398-RA 615 CG42398-RA 56..157 641..540 225 81.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24499603..24500124 143..664 2595 99.8 Plus
2R 25286936 2R 24499419..24499543 19..143 610 99.2 Plus
U 3151297 U 827697..827923 144..373 365 78.3 Plus
U 3151297 U 2799521..2799748 373..143 355 77.9 Minus
Ymm 880023 Ymm 679391..679566 172..357 325 79.6 Plus
U 3151297 U 2799841..2800079 384..143 320 76.4 Minus
U 3151297 U 2799244..2799418 320..143 315 79.8 Minus
U 3151297 U 828079..828252 143..319 310 79.7 Plus
U 3151297 U 2889733..2890168 627..172 285 72.3 Minus
U 3151297 U 1942917..1942985 172..240 225 88.4 Plus
U 3151297 U 2792304..2792454 496..646 200 75.5 Plus
Blast to na_te.dros performed on 2015-02-02 19:20:24 has no hits.

BO14468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:54 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-PA 1..660 15..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:04 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13591-PB 1..660 15..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:52:32 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 62..737 12..687 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:04 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 62..737 12..687 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:04 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24499414..24499542 12..142 96 <- Plus
2R 24499603..24500124 143..664 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:52:32 Download gff for BO14468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20386937..20387065 12..142 96 <- Plus
arm_2R 20387126..20387647 143..664 99 <- Plus

BO14468.5prime Sequence

689 bp (688 high quality bases) assembled on 2006-05-29

> BO14468.5prime
GAAGTTATCAGTCGACATGTCGTGTCCCAGGAGCATCGAGATACCAGATG
GCAGTTGGATCGATTGGTTCCTGGGAATCAAGGGCCACGAATTCTCCTGC
CGGGTGCCCAATGAATACATCCAGGACAAGTTCAATCTGACGGGCCTGGA
GTTCGATAGCCAGACACTGGAGGTAGTCTTAGATCCGGAGTTCGACAACG
AGGACTGGGACTGCGCCGAAGAGAAGAAGCTGTATGGCATGATCCATGCA
CGGTACATCGTTTCGCCGCGTGGCATTGAAGATATGCGATTAAAGTACGA
AAGGGGGGACTTCGGATCGTGTCCGAGAGTCTTTTGTAAGAGGCAGAAAG
TCCTGCCAGTGGGCCTTCACGACGTGTGGGACAAGGCCCAAGTTAAGATC
TATTGCCCTAGCTGTAACAACGTCTACATCCCGCTACCCCACAATGGAAT
GCTGGACGGAGCCATGTTCGGGACCAGCTTCCCGCATATGTTCTTTATGC
AGCTGCCGAGCTTGATACCCTCTCCGCCCGTGGAGAAGTACATCCCCCGT
ATCTATGGCTTCCAGTTGCACAAGAAGGCCCTGATGCCGCCCGAATCAGC
AGAGTCCCCGCCAATAAAGGTCGAATCCTCGGTCAGCAAGTCCCCCTCCT
GGCTAAGGAATGTCCCGAATTTTGCAAGCTTTCTAGACC

BO14468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13591-PA 660 Ssl-RA 1..657 17..673 3235 99.6 Plus
CG13591-PB 660 Ssl-RB 1..657 17..673 3235 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl-RA 908 CG13591-RA 75..732 16..673 3260 99.7 Plus
CG40635-RB 264 CG40635-RB 33..264 46..274 270 75 Plus
SteXh:CG42398-RA 615 CG42398-RA 56..157 51..152 225 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24499603..24500124 549..28 2595 99.8 Minus
2R 25286936 2R 24499419..24499543 673..549 610 99.2 Minus
U 3151297 U 827697..827923 548..319 365 78.3 Minus
U 3151297 U 2799521..2799748 319..549 355 77.9 Plus
Ymm 880023 Ymm 679391..679566 520..335 325 79.6 Minus
U 3151297 U 2799841..2800079 308..549 320 76.4 Plus
U 3151297 U 2799244..2799418 372..549 315 79.8 Plus
U 3151297 U 828079..828252 549..373 310 79.7 Minus
U 3151297 U 2889733..2890168 65..520 285 72.3 Plus
U 3151297 U 1942917..1942985 520..452 225 88.4 Minus
U 3151297 U 2792304..2792454 196..46 200 75.5 Minus
Blast to na_te.dros performed on 2015-02-13 07:24:27 has no hits.

BO14468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:55 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-PA 1..660 17..677 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:05 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13591-PB 1..660 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:30:52 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 62..737 5..680 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:56 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 62..737 5..680 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:56 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24499414..24499542 550..680 96 <- Minus
2R 24499603..24500124 28..549 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:30:52 Download gff for BO14468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20386937..20387065 550..680 96 <- Minus
arm_2R 20387126..20387647 28..549 99 <- Minus

BO14468.complete Sequence

691 bp assembled on 2006-10-11

GenBank Submission: FJ633140

> BO14468.complete
GAAGTTATCAGTCGACATGTCGTGTCCCAGGAGCATCGAGATACCAGATG
GCAGTTGGATCGATTGGTTCCTGGGAATCAAGGGCCACGAATTCTCCTGC
CGGGTGCCCAATGAATACATCCAGGACAAGTTCAATCTGACGGGCCTGGA
GTTCGATAGCCAGACACTGGAGGTAGTCTTAGATCCGGAGTTCGACAACG
AGGACTGGGACTGCGCCGAAGAGAAGAAGCTGTATGGCATGATCCATGCA
CGGTACATCGTTTCGCCGCGTGGCATTGAAGATATGCGATTAAAGTACGA
AAGGGGGGACTTCGGATCGTGTCCGAGAGTCTTTTGTAAGAGGCAGAAAG
TCCTGCCAGTGGGCCTTCACGACGTGTGGGACAAGGCCCAAGTTAAGATC
TATTGCCCTAGCTGTAACAACGTCTACATCCCGCTACCCCACAATGGAAT
GCTGGACGGAGCCATGTTCGGGACCAGCTTCCCGCATATGTTCTTTATGC
AGCTGCCGAGCTTGATACCCTCTCCGCCCGTGGAGAAGTACATCCCCCGT
ATCTATGGCTTCCAGTTGCACAAGAAGGCCCTGATGCCGCCCGAATCAGC
AGAGTCCCCGCCAATAAAGGTCGAATCCTCGGTCAGCAAGTCCCCCTCCT
GGCTAAGGAATGTCCCGAATTTTGCAAGCTTTCTAGACCAT

BO14468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl-RA 660 CG13591-PA 1..657 17..673 3255 99.7 Plus
SteXh:CG42398-RA 519 CG42398-PA 26..127 51..152 225 81.4 Plus
CG40635-RB 264 CG40635-PB 33..264 46..274 225 74.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl-RA 908 CG13591-RA 75..732 16..673 3260 99.7 Plus
SteXh:CG42398-RA 615 CG42398-RA 56..157 51..152 225 81.4 Plus
CG40635-RB 264 CG40635-RB 33..264 46..274 225 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24499603..24500124 549..28 2595 99.8 Minus
2R 25286936 2R 24499419..24499543 673..549 610 99.2 Minus
U 3151297 U 827697..827923 548..319 365 78.3 Minus
U 3151297 U 2799521..2799748 319..549 355 77.9 Plus
Ymm 880023 Ymm 679391..679566 520..335 325 79.6 Minus
U 3151297 U 2799841..2800079 308..549 320 76.4 Plus
Ymm 880023 Ymm 669241..669695 520..46 320 72.6 Minus
U 3151297 U 2799244..2799418 372..549 315 79.8 Plus
U 3151297 U 828079..828252 549..373 310 79.7 Minus
Ymm 880023 Ymm 761189..761364 335..520 310 79 Plus
Ymm 880023 Ymm 568419..568791 421..51 300 73.3 Minus
Y 3667352 Y 846180..846552 51..421 300 73.3 Plus
Y 3667352 Y 847951..848323 51..421 300 73.3 Plus
Y 3667352 Y 2535261..2535633 51..421 300 73.3 Plus
Y 3667352 Y 2540992..2541364 51..421 300 73.3 Plus
Y 3667352 Y 2543861..2544233 51..421 300 73.3 Plus
Y 3667352 Y 2546388..2546760 51..421 300 73.3 Plus
Y 3667352 Y 2548916..2549288 51..421 300 73.3 Plus
Y 3667352 Y 2551785..2552157 51..421 300 73.3 Plus
Y 3667352 Y 2554654..2555026 51..421 300 73.3 Plus
Y 3667352 Y 2568543..2568915 51..421 300 73.3 Plus
Y 3667352 Y 2559995..2560367 51..421 300 73.3 Plus
Y 3667352 Y 2562865..2563237 51..421 300 73.3 Plus
Y 3667352 Y 2565704..2566076 51..421 300 73.3 Plus
Y 3667352 Y 2571382..2571754 51..421 300 73.3 Plus
Y 3667352 Y 2577058..2577430 51..421 300 73.3 Plus
Y 3667352 Y 2579898..2580270 51..421 300 73.3 Plus
Y 3667352 Y 2582730..2583102 51..421 300 73.3 Plus
Y 3667352 Y 2585591..2585963 51..421 300 73.3 Plus
Y 3667352 Y 2590941..2591313 51..421 300 73.3 Plus
Y 3667352 Y 2593811..2594183 51..421 300 73.3 Plus
Y 3667352 Y 2596650..2597022 51..421 300 73.3 Plus
Ymm 880023 Ymm 424354..424529 520..335 295 78.5 Minus
Ymm 880023 Ymm 415431..415600 520..341 295 78.9 Minus
U 3151297 U 2889733..2890168 65..520 285 72.3 Plus
Y 3667352 Y 912812..913184 51..421 285 73 Plus
Y 3667352 Y 2520914..2521286 51..421 285 73 Plus
Y 3667352 Y 2523789..2524161 51..421 285 73 Plus
Y 3667352 Y 2526672..2527044 51..421 285 73 Plus
Y 3667352 Y 2529555..2529927 51..421 285 73 Plus
Y 3667352 Y 2532388..2532760 51..421 285 73 Plus
Y 3667352 Y 2538123..2538495 51..421 285 73 Plus
Ymm 880023 Ymm 411348..411715 425..46 280 73.4 Minus
Y 3667352 Y 2588469..2588828 51..408 280 73.1 Plus
Y 3667352 Y 876841..877209 51..417 280 73 Plus
Y 3667352 Y 2557523..2557882 51..408 280 73.1 Plus
Ymm 880023 Ymm 637598..637772 519..335 275 77.8 Minus
Ymm 880023 Ymm 683596..683968 421..51 270 72.7 Minus
Ymm 880023 Ymm 717784..718156 51..421 270 72.7 Plus
Ymm 880023 Ymm 829102..829474 51..421 270 72.7 Plus
Y 3667352 Y 847201..847573 51..421 270 72.7 Plus
Y 3667352 Y 851751..852123 421..51 270 72.7 Minus
Y 3667352 Y 854923..855295 51..421 270 72.7 Plus
Y 3667352 Y 870667..871039 421..51 270 72.7 Minus
Y 3667352 Y 872690..873062 421..51 270 72.7 Minus
Y 3667352 Y 881085..881457 51..421 270 72.7 Plus
Y 3667352 Y 905119..905491 421..51 270 72.7 Minus
Y 3667352 Y 949424..949796 51..421 270 72.7 Plus
Y 3667352 Y 1000738..1001110 421..51 270 72.7 Minus
Y 3667352 Y 2503998..2504370 51..421 270 72.7 Plus
Y 3667352 Y 2506867..2507239 51..421 270 72.7 Plus
Y 3667352 Y 2509721..2510093 51..421 270 72.7 Plus
Y 3667352 Y 2515169..2515541 51..421 270 72.7 Plus
Y 3667352 Y 2518036..2518408 51..421 270 72.7 Plus
Ymm 880023 Ymm 835858..836229 421..52 265 72.7 Minus
Y 3667352 Y 1008103..1008474 52..421 265 72.7 Plus
Ymm 880023 Ymm 159465..159834 46..425 255 72.3 Plus
Ymm 880023 Ymm 677760..677828 520..452 255 91.3 Minus
Y 3667352 Y 893865..894011 197..51 255 78.2 Minus
Y 3667352 Y 910254..910626 421..51 255 72.5 Minus
Y 3667352 Y 932282..932654 51..421 255 72.5 Plus
Ymm 880023 Ymm 155775..156029 46..297 250 74.1 Plus
Ymm 880023 Ymm 413440..413615 520..335 250 76.9 Minus
Ymm 880023 Ymm 711004..711124 51..171 245 80.2 Plus
Y 3667352 Y 954004..954124 171..51 245 80.2 Minus
U 3151297 U 1942917..1942985 520..452 225 88.4 Minus
Ymm 880023 Ymm 560498..560729 274..46 225 74.1 Minus
Xmm 1049845 Xmm 581799..581900 51..152 225 81.4 Plus
X 23542271 X 23317196..23317297 152..51 225 81.4 Minus
X 23542271 X 23352530..23352631 152..51 225 81.4 Minus
2CEN 225573 2CEN 194169..194270 152..51 225 81.4 Minus
Ymm 880023 Ymm 409253..409619 425..46 215 72.8 Minus
Ymm 880023 Ymm 514678..514744 519..453 215 88.1 Minus
Ymm 880023 Ymm 563133..563373 51..288 210 73.4 Plus
X 23542271 X 14051059..14051160 152..51 210 80.4 Minus
X 23542271 X 14052328..14052429 152..51 210 80.4 Minus
X 23542271 X 14054867..14054968 152..51 210 80.4 Minus
X 23542271 X 14056136..14056237 152..51 210 80.4 Minus
X 23542271 X 14057405..14057506 152..51 210 80.4 Minus
X 23542271 X 14058674..14058775 152..51 210 80.4 Minus
X 23542271 X 14059944..14060045 152..51 210 80.4 Minus
X 23542271 X 14061212..14061313 152..51 210 80.4 Minus
X 23542271 X 23346572..23346673 152..51 210 80.4 Minus
X 23542271 X 14000292..14000393 51..152 210 80.4 Plus
X 23542271 X 14047282..14047383 152..51 210 80.4 Minus
X 23542271 X 14048521..14048622 152..51 210 80.4 Minus
X 23542271 X 14049790..14049891 152..51 210 80.4 Minus
U 3151297 U 2792304..2792454 196..46 200 75.5 Minus
Ymm 880023 Ymm 504134..504284 495..335 200 76.4 Minus
Ymm 880023 Ymm 533379..533422 495..452 190 95.5 Minus
3CEN 744266 3CEN 409235..409292 520..463 185 87.9 Minus
X 23542271 X 14053597..14053699 152..51 180 80.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:42:14 has no hits.

BO14468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:22 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl-RB 1..660 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:30 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl-RB 26..701 5..680 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:13 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 76..732 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:22 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl-RB 26..701 5..680 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:39 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
Ssl-RA 76..732 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:39 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24499417..24499542 550..675 97 <- Minus
2R 24499603..24500132 20..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:13 Download gff for BO14468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20386940..20387065 550..675 97 <- Minus
arm_2R 20387126..20387655 20..549 99   Minus

BO14468.pep Sequence

Translation from 16 to 691

> BO14468.pep
MSCPRSIEIPDGSWIDWFLGIKGHEFSCRVPNEYIQDKFNLTGLEFDSQT
LEVVLDPEFDNEDWDCAEEKKLYGMIHARYIVSPRGIEDMRLKYERGDFG
SCPRVFCKRQKVLPVGLHDVWDKAQVKIYCPSCNNVYIPLPHNGMLDGAM
FGTSFPHMFFMQLPSLIPSPPVEKYIPRIYGFQLHKKALMPPESAESPPI
KVESSVSKSPSWLRNVPNFASFLDH

BO14468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ssl-PA 219 CG13591-PA 1..219 1..219 1210 100 Plus
SteXh:CG42398-PA 172 CG42398-PA 8..163 11..166 471 58 Plus
CkIIbeta2-PA 219 CG8914-PA 6..194 11..188 469 49.7 Plus
Ste:CG33238-PB 172 CG33238-PB 3..163 6..166 468 56.2 Plus
Ste:CG33241-PB 172 CG33241-PB 8..163 11..166 464 56.7 Plus