Clone BO14471 Report

Search the DGRC for BO14471

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG15330-RA
Protein status:BO14471.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO14471.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-05-29

> BO14471.3prime
ATGGTCTAGAAAGCTTGCAATCCTATTGGGTGCAGGCAGCAGCAGCTCAT
CCAGTAGCTCGGCCACAAATCGTGCATCCACCACAAGATTTGGTTCCCCC
TGGGGGTGTGGTGGCCAGTGGTCCGTCTCATGGTAGTGGACCGGATAGAA
ATAGACATACTCTTCGATATGCTGGCGGGGCTGAGAGGACATGGGACTGT
GGAGCTGCACATGCCGTCGTCCAGGTGGACGATGCATTTGCAGCTGTTGA
CCCACGACAAGTAGATCCAAGGTGTTATTATTGGATGCTTTGAATTTAAC
CGATTTATTCGGATGATTGCGTCTGATCTGCGTTGTCTGCTTCCTGGCCA
TTGGCAACGGCATCGGCGTCTGCTGACCACCACCGCTCATCCGTTGGCCA
GGATGGGCGACGAACGGTGGCTGCAGGAGCGGATCGTGGATGAGCAAGTC
GCTGGACCTCTTGCCCGTCAGCCGCTTGAGGCGTCTACCAATCCTGTCCC
ACTCGTTAAGTTGCCGCTGATGCGCCTGCTGCAAGCGCCAAAGTGTTGTT
GCAACGTCCATGTCGACTGATAACT

BO14471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-PA 546 CG15330-RA 1..456 561..106 2280 100 Minus
CG15330-PA 546 CG15330-RA 465..531 97..31 335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-RA 639 CG15330-RA 59..589 561..31 2595 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7956122..7956652 561..31 2595 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:44:56 has no hits.

BO14471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:58 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-PA 1..543 19..561 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:10 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-PA 1..543 19..561 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:49:10 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 19..570 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:27 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 19..570 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:27 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7956114..7956664 19..570 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:49:10 Download gff for BO14471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7850147..7850697 19..570 97   Minus

BO14471.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-05-29

> BO14471.5prime
GAAGTTATCACTCGACATGGACGTTGCAACAACACTTTGGCGCTTGCAGC
AGGCGCATCAGCGGCAACTTAACGAGTGGGACAGGATTGGTAGACGCCTC
AAGCGGCTGACGGGCAAGAGGTCCAGCGACTTGCTCATCCACGATCCGCT
CCTGCAGCCACCGTTCGTCGCCCATCCTGGCCAACGGATGAGCGGTGGTG
GTCAGCAGACGCCGATGCCGTTGCCAATGGCCAGGAAGCAGACAACGCAG
ATCAGACGCAATCATCCGAATAAATCGGTTAAATTCAAAGCATCCAATAA
TAACACCTTGGATCTACTTGTCGTGGGTCAACAGCTGCAAATGCATCGTC
CACCTGGACGACGGCATGTGCAGCTCCACAGTCCCATGTCCTCTCAGCCC
CGCCAGCATATCGAAGAGTATGTCTATTTCTATCCGGTCCACTACCATGA
GACGGACCACTGGCCACCACACGGCCAGCCGGAACCAAATCTTGTGGTGG
ATGCACGATTTGTGGCCGAGCTACTGGATGAGCTGCTGCTGCCTGCAGGC
AATCGTATTGCAAGCTTTCTAGACC

BO14471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-PA 546 CG15330-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-RA 639 CG15330-RA 59..601 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7956122..7956664 17..559 2715 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:47:20 has no hits.

BO14471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:28:59 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-PA 1..546 17..562 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:11 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-PA 1..546 17..562 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:59 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 8..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:27 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 8..559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:27 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7956114..7956664 8..559 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:59 Download gff for BO14471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7850147..7850697 8..559 99   Plus

BO14471.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ633141

> BO14471.complete
GAAGTTATCAGTCGACATGGACGTTGCAACAACACTTTGGCGCTTGCAGC
AGGCGCATCAGCGGCAACTTAACGAGTGGGACAGGATTGGTAGACGCCTC
AAGCGGCTGACGGGCAAGAGGTCCAGCGACTTGCTCATCCACGATCCGCT
CCTGCAGCCACCGTTCGTCGCCCATCCTGGCCAACGGATGAGCGGTGGTG
GTCAGCAGACGCCGATGCCGTTGCCAATGGCCAGGAAGCAGACAACGCAG
ATCAGACGCAATCATCCGAATAAATCGGTTAAATTCAAAGCATCCAATAA
TAACACCTTGGATCTACTTGTCGTGGGTCAACAGCTGCAAATGCATCGTC
CACCTGGACGACGGCATGTGCAGCTCCACAGTCCCATGTCCTCTCAGCCC
CGCCAGCATATCGAAGAGTATGTCTATTTCTATCCGGTCCACTACCATGA
GACGGACCACTGGCCACCACACGGCCAGCCGGAACCAAATCTTGTGGTGG
ATGCACGATTTGTGGCCGAGCTACTGGATGAGCTGCTGCTGCCTGCAGGC
AATCGTATTGCAAGCTTTCTAGACCAT

BO14471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-RA 546 CG15330-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-RA 639 CG15330-RA 59..601 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7956122..7956664 17..559 2715 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:42:33 has no hits.

BO14471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:20 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 17..562 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:49 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 8..559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:36:09 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 59..601 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:20 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 51..601 8..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:46 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 59..601 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:46 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
X 7956122..7956664 17..561 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:36:09 Download gff for BO14471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7850155..7850697 17..561 99   Plus

BO14471.pep Sequence

Translation from 16 to 577

> BO14471.pep
MDVATTLWRLQQAHQRQLNEWDRIGRRLKRLTGKRSSDLLIHDPLLQPPF
VAHPGQRMSGGGQQTPMPLPMARKQTTQIRRNHPNKSVKFKASNNNTLDL
LVVGQQLQMHRPPGRRHVQLHSPMSSQPRQHIEEYVYFYPVHYHETDHWP
PHGQPEPNLVVDARFVAELLDELLLPAGNRIASFLDH

BO14471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-PA 181 CG15330-PA 1..181 1..181 980 100 Plus