Clone Sequence Records
BO14473.3prime Sequence
850 bp (754 high quality bases) assembled on 2006-05-29
> BO14473.3prime
ATGGTCTAGAAAGCTTGCCAGATTTCTTTTATTTGACTTATTAATTTTTC
GGCGTTTTAAAATCATATCATACAGAGCGTCCAAACCTTCTTGGAGACCC
TCACCAGTTATAGCACAGGTTGGCTGTATATACCACCCCCTAAATTGCAC
AGAATTTGATGAAGACCTGTTCATCTTTTTGTTATGAAAACCATTTTTAA
CATCTTGTGGGTTTTTTTGATCCAGTACAGCAGAATTGTTGTGAGATTGC
GGATATATAAAAGCTGTCAAGGCTCCTCCGCTTAACGTGGAATTGTGGTC
TTTACTTTCAAGTGCAGGTTTTATGTGAATCATAGACGAATGCAGATGAC
TCTCTTTTTTCTCTTCTAAAGATTTATCTGTAATACTTTGGTTTGAAACT
CTACAGCCAATTAAATTAATTGTGGGAGAAGAGTCGGAACTAGAGGGCAT
TGATATATTAGGCACCGGGTTGTAAAGTTCGTTCAGTCCTAAAAGTTTTT
CCAGTTCCATTGCACCACAAGCGTTGGGCAGATCCTGTTTATTTGCTAGT
ATCAGAACGGGAACACCCTGGTTATCAGGACATTTAGCGGTACGCATTAA
TTCCATCTTAGCTTCTTCCATTCTTTCTGTATCAACAGAATCAATAACAA
ACAAAATGCCATCAGTGCAACGTGTATAACTTCTCCAAAGTGGTCTCAAT
TTTTCTTGTCCTCCGACATCCCAAACCAAAAAATGAACTCCTTTTGCTTT
GCCAAGGGTACATTGTCCCTTTTCACAATTAAATCCAATAGTTGGCACTG
TGTTTAAGTATTGATCAAACTTAAGTCTGTATAAAGCCGTTGTTTTTCCC
BO14473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2219-PA | 939 | CG2219-RA | 105..936 | 850..19 | 4135 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RB | 1095 | CG2219-RB | 168..999 | 850..19 | 4145 | 99.9 | Minus |
Arl4-RA | 1002 | CG2219-RA | 165..996 | 850..19 | 4145 | 99.9 | Minus |
Arl4-RC | 958 | CG2219-RC | 338..952 | 632..19 | 3050 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177444..177994 | 19..569 | 2755 | 100 | Plus |
4 | 1348131 | 4 | 178777..178881 | 567..671 | 525 | 100 | Plus |
4 | 1348131 | 4 | 178937..179036 | 671..770 | 485 | 99 | Plus |
4 | 1348131 | 4 | 179091..179173 | 768..850 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:20:00 has no hits.
BO14473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:02 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 105..939 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:16 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 105..939 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:52:29 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 165..1002 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:01 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 165..1002 | 15..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:01 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 177445..177992 | 18..567 | 99 | <- | Plus |
4 | 178778..178880 | 568..670 | 100 | <- | Plus |
4 | 178937..179034 | 671..768 | 98 | <- | Plus |
4 | 179092..179173 | 769..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:52:29 Download gff for
BO14473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 199718..199799 | 769..850 | 100 | | Plus |
arm_4 | 198071..198618 | 18..567 | 99 | <- | Plus |
arm_4 | 199404..199506 | 568..670 | 100 | <- | Plus |
arm_4 | 199563..199660 | 671..768 | 98 | <- | Plus |
BO14473.5prime Sequence
811 bp (663 high quality bases) assembled on 2006-05-29
> BO14473.5prime
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCA
BO14473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2219-PA | 939 | CG2219-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 1002 | CG2219-RA | 61..855 | 17..811 | 3975 | 100 | Plus |
Arl4-RB | 1095 | CG2219-RB | 61..858 | 17..811 | 3935 | 99.6 | Plus |
Arl4-RC | 958 | CG2219-RC | 338..811 | 339..811 | 2345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177585..177994 | 811..402 | 2050 | 100 | Minus |
4 | 1348131 | 4 | 179089..179213 | 205..81 | 625 | 100 | Minus |
4 | 1348131 | 4 | 178777..178881 | 404..300 | 525 | 100 | Minus |
4 | 1348131 | 4 | 178937..179036 | 300..201 | 500 | 100 | Minus |
4 | 1348131 | 4 | 179263..179329 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:24:08 has no hits.
BO14473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:03 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:17 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:30:49 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 59..854 | 14..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:57 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 59..854 | 14..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:57 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 179092..179211 | 83..202 | 100 | <- | Minus |
4 | 179264..179331 | 14..82 | 98 | | Minus |
4 | 177586..177992 | 404..810 | 100 | <- | Minus |
4 | 178778..178880 | 301..403 | 100 | <- | Minus |
4 | 178937..179034 | 203..300 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:30:49 Download gff for
BO14473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 198212..198618 | 404..810 | 100 | <- | Minus |
arm_4 | 199404..199506 | 301..403 | 100 | <- | Minus |
arm_4 | 199563..199660 | 203..300 | 100 | <- | Minus |
arm_4 | 199718..199837 | 83..202 | 100 | <- | Minus |
arm_4 | 199890..199957 | 14..82 | 98 | | Minus |
BO14473.complete Sequence
970 bp assembled on 2006-10-11
GenBank Submission: FJ633142
> BO14473.complete
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGGTATATACAGCCA
ACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAGGTTTGGACGCTCTGTA
TGATATGATTTTAAAACGCCGAAAAATTAATAAGTCAAATAAAAGAAATC
TGGCAAGCTTTCTAGACCAT
BO14473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 939 | CG2219-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Arl4-RB | 942 | CG2219-PB | 1..939 | 17..952 | 4615 | 99.7 | Plus |
Arl4-RC | 303 | CG2219-PC | 1..284 | 17..300 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-RA | 1002 | CG2219-RA | 61..996 | 17..952 | 4680 | 100 | Plus |
Arl4-RB | 1095 | CG2219-RB | 61..999 | 17..952 | 4615 | 99.7 | Plus |
Arl4-RC | 958 | CG2219-RC | 344..952 | 344..952 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 177444..177994 | 952..402 | 2755 | 100 | Minus |
4 | 1348131 | 4 | 179089..179213 | 205..81 | 625 | 100 | Minus |
4 | 1348131 | 4 | 178777..178881 | 404..300 | 525 | 100 | Minus |
4 | 1348131 | 4 | 178937..179036 | 300..201 | 500 | 100 | Minus |
4 | 1348131 | 4 | 179263..179329 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:23:40 has no hits.
BO14473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:23 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 1..939 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:50 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 24..965 | 14..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:17 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 61..996 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:23 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2219-RA | 24..965 | 14..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:32 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl4-RA | 61..996 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:32 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 179264..179329 | 17..82 | 100 | | Minus |
4 | 178778..178880 | 301..403 | 100 | <- | Minus |
4 | 178937..179034 | 203..300 | 100 | <- | Minus |
4 | 179092..179211 | 83..202 | 100 | <- | Minus |
4 | 177440..177992 | 404..954 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:17 Download gff for
BO14473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 198066..198618 | 404..954 | 99 | <- | Minus |
arm_4 | 199404..199506 | 301..403 | 100 | <- | Minus |
arm_4 | 199563..199660 | 203..300 | 100 | <- | Minus |
arm_4 | 199718..199837 | 83..202 | 100 | <- | Minus |
arm_4 | 199890..199955 | 17..82 | 100 | | Minus |
BO14473.pep Sequence
Translation from 16 to 970
> BO14473.pep
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNLASFLDH
BO14473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl4-PA | 312 | CG2219-PA | 1..312 | 1..312 | 1629 | 100 | Plus |
Arl4-PB | 313 | CG2219-PB | 1..313 | 1..312 | 1617 | 99.7 | Plus |
Arl4-PC | 100 | CG2219-PC | 1..95 | 1..95 | 502 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 7..150 | 14..162 | 362 | 49 | Plus |
Arf79F-PI | 182 | CG8385-PI | 7..150 | 14..162 | 362 | 49 | Plus |