Clone BO14473 Report

Search the DGRC for BO14473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG2219-RA
Protein status:BO14473.pep: validated full length
Sequenced Size:970

Clone Sequence Records

BO14473.3prime Sequence

850 bp (754 high quality bases) assembled on 2006-05-29

> BO14473.3prime
ATGGTCTAGAAAGCTTGCCAGATTTCTTTTATTTGACTTATTAATTTTTC
GGCGTTTTAAAATCATATCATACAGAGCGTCCAAACCTTCTTGGAGACCC
TCACCAGTTATAGCACAGGTTGGCTGTATATACCACCCCCTAAATTGCAC
AGAATTTGATGAAGACCTGTTCATCTTTTTGTTATGAAAACCATTTTTAA
CATCTTGTGGGTTTTTTTGATCCAGTACAGCAGAATTGTTGTGAGATTGC
GGATATATAAAAGCTGTCAAGGCTCCTCCGCTTAACGTGGAATTGTGGTC
TTTACTTTCAAGTGCAGGTTTTATGTGAATCATAGACGAATGCAGATGAC
TCTCTTTTTTCTCTTCTAAAGATTTATCTGTAATACTTTGGTTTGAAACT
CTACAGCCAATTAAATTAATTGTGGGAGAAGAGTCGGAACTAGAGGGCAT
TGATATATTAGGCACCGGGTTGTAAAGTTCGTTCAGTCCTAAAAGTTTTT
CCAGTTCCATTGCACCACAAGCGTTGGGCAGATCCTGTTTATTTGCTAGT
ATCAGAACGGGAACACCCTGGTTATCAGGACATTTAGCGGTACGCATTAA
TTCCATCTTAGCTTCTTCCATTCTTTCTGTATCAACAGAATCAATAACAA
ACAAAATGCCATCAGTGCAACGTGTATAACTTCTCCAAAGTGGTCTCAAT
TTTTCTTGTCCTCCGACATCCCAAACCAAAAAATGAACTCCTTTTGCTTT
GCCAAGGGTACATTGTCCCTTTTCACAATTAAATCCAATAGTTGGCACTG
TGTTTAAGTATTGATCAAACTTAAGTCTGTATAAAGCCGTTGTTTTTCCC

BO14473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2219-PA 939 CG2219-RA 105..936 850..19 4135 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RB 1095 CG2219-RB 168..999 850..19 4145 99.9 Minus
Arl4-RA 1002 CG2219-RA 165..996 850..19 4145 99.9 Minus
Arl4-RC 958 CG2219-RC 338..952 632..19 3050 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177444..177994 19..569 2755 100 Plus
4 1348131 4 178777..178881 567..671 525 100 Plus
4 1348131 4 178937..179036 671..770 485 99 Plus
4 1348131 4 179091..179173 768..850 415 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:20:00 has no hits.

BO14473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:02 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 105..939 18..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:16 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 105..939 18..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:52:29 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 165..1002 15..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:01 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 165..1002 15..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:01 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
4 177445..177992 18..567 99 <- Plus
4 178778..178880 568..670 100 <- Plus
4 178937..179034 671..768 98 <- Plus
4 179092..179173 769..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:52:29 Download gff for BO14473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 199718..199799 769..850 100   Plus
arm_4 198071..198618 18..567 99 <- Plus
arm_4 199404..199506 568..670 100 <- Plus
arm_4 199563..199660 671..768 98 <- Plus

BO14473.5prime Sequence

811 bp (663 high quality bases) assembled on 2006-05-29

> BO14473.5prime
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCA

BO14473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2219-PA 939 CG2219-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 1002 CG2219-RA 61..855 17..811 3975 100 Plus
Arl4-RB 1095 CG2219-RB 61..858 17..811 3935 99.6 Plus
Arl4-RC 958 CG2219-RC 338..811 339..811 2345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177585..177994 811..402 2050 100 Minus
4 1348131 4 179089..179213 205..81 625 100 Minus
4 1348131 4 178777..178881 404..300 525 100 Minus
4 1348131 4 178937..179036 300..201 500 100 Minus
4 1348131 4 179263..179329 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:24:08 has no hits.

BO14473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:03 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:17 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:30:49 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 59..854 14..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:28:57 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 59..854 14..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:28:57 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
4 179092..179211 83..202 100 <- Minus
4 179264..179331 14..82 98   Minus
4 177586..177992 404..810 100 <- Minus
4 178778..178880 301..403 100 <- Minus
4 178937..179034 203..300 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:30:49 Download gff for BO14473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 198212..198618 404..810 100 <- Minus
arm_4 199404..199506 301..403 100 <- Minus
arm_4 199563..199660 203..300 100 <- Minus
arm_4 199718..199837 83..202 100 <- Minus
arm_4 199890..199957 14..82 98   Minus

BO14473.complete Sequence

970 bp assembled on 2006-10-11

GenBank Submission: FJ633142

> BO14473.complete
GAAGTTATCAGTCGACATGGGTGCTACAATGGTAAAACCGTTGGTAAAAA
ATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTACATGTAGTT
ATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATACAGACTTAA
GTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTAATTGTGAAA
AGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTTTTGGTTTGG
GATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAGTTATACACG
TTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATACAGAAAGAA
TGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGTCCTGATAAC
CAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCTGCCCAACGC
TTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACGAACTTTACA
ACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCTTCTCCCACA
ATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTACAGATAAATC
TTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGATTCACATAA
AACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGCGGAGGAGCC
TTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGCTGTACTGGA
TCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACAAAAAGATGA
ACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGGTATATACAGCCA
ACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAGGTTTGGACGCTCTGTA
TGATATGATTTTAAAACGCCGAAAAATTAATAAGTCAAATAAAAGAAATC
TGGCAAGCTTTCTAGACCAT

BO14473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 939 CG2219-PA 1..936 17..952 4680 100 Plus
Arl4-RB 942 CG2219-PB 1..939 17..952 4615 99.7 Plus
Arl4-RC 303 CG2219-PC 1..284 17..300 1420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-RA 1002 CG2219-RA 61..996 17..952 4680 100 Plus
Arl4-RB 1095 CG2219-RB 61..999 17..952 4615 99.7 Plus
Arl4-RC 958 CG2219-RC 344..952 344..952 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177444..177994 952..402 2755 100 Minus
4 1348131 4 179089..179213 205..81 625 100 Minus
4 1348131 4 178777..178881 404..300 525 100 Minus
4 1348131 4 178937..179036 300..201 500 100 Minus
4 1348131 4 179263..179329 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:23:40 has no hits.

BO14473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:23 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:50 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 24..965 14..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:17 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 61..996 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:23 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 24..965 14..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:32 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 61..996 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:32 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
4 179264..179329 17..82 100   Minus
4 178778..178880 301..403 100 <- Minus
4 178937..179034 203..300 100 <- Minus
4 179092..179211 83..202 100 <- Minus
4 177440..177992 404..954 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:17 Download gff for BO14473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 198066..198618 404..954 99 <- Minus
arm_4 199404..199506 301..403 100 <- Minus
arm_4 199563..199660 203..300 100 <- Minus
arm_4 199718..199837 83..202 100 <- Minus
arm_4 199890..199955 17..82 100   Minus

BO14473.pep Sequence

Translation from 16 to 970

> BO14473.pep
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNLASFLDH

BO14473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-PA 312 CG2219-PA 1..312 1..312 1629 100 Plus
Arl4-PB 313 CG2219-PB 1..313 1..312 1617 99.7 Plus
Arl4-PC 100 CG2219-PC 1..95 1..95 502 100 Plus
Arf79F-PJ 182 CG8385-PJ 7..150 14..162 362 49 Plus
Arf79F-PI 182 CG8385-PI 7..150 14..162 362 49 Plus