Clone Sequence Records
BO14476.3prime Sequence
422 bp (421 high quality bases) assembled on 2006-05-29
> BO14476.3prime
ATGGTCTAGAAAGCTTGCCATGCTGAACGATTCGCCGCAGCCGCATGTGC
CCTTAATGTTCGGATTGTTAAACACGAACTCGCTGGACAGCTTCGATTCC
ACAAAGTCCATCTCGGTACCCAGCAGCGACAACTGCGCTTTCTTGTCGAT
GAAGACCTTGACGCCATCCTGGACCACCTCCTCATCCAACTTGTCTTTTT
GGCTGGCATAGTCCAGCGTGTAGGACAGACCATTGCATCCTCGCTGCCGT
ACGCCCACCTTTAGGCCAACCATGTCCGGCTTGTCCTGCAGAAGCGTCTT
GATGCGTAGCACCGCCGCGGGTGTCAGAGTCAGAGCGGCCCGCGTCGGGA
TTAACTTCCGGCCTTTCACCGCCCGCACTGTCGCCGTTGCCACCACACGT
GTCGCCATGTCGACTGATAACT
BO14476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8198-PA | 393 | l(1)G0136-RA | 1..390 | 408..19 | 1950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..489 | 408..19 | 1950 | 100 | Minus |
l(1)G0136-RB | 783 | CG8198-RB | 100..492 | 408..19 | 1910 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735489 | 120..19 | 510 | 100 | Minus |
X | 23542271 | X | 15734369..15734452 | 408..325 | 420 | 100 | Minus |
X | 23542271 | X | 15735245..15735324 | 196..117 | 400 | 100 | Minus |
X | 23542271 | X | 15735098..15735174 | 271..195 | 385 | 100 | Minus |
X | 23542271 | X | 15734552..15734608 | 325..269 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:57:23 has no hits.
BO14476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:08 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 15..408 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:25 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 15..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:35 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..492 | 15..412 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:22:38 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..492 | 15..412 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:22:38 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15734367..15734452 | 325..412 | 97 | -> | Minus |
X | 15734553..15734606 | 271..324 | 100 | -> | Minus |
X | 15735099..15735174 | 195..270 | 100 | -> | Minus |
X | 15735247..15735321 | 120..194 | 100 | -> | Minus |
X | 15735389..15735492 | 15..119 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:35 Download gff for
BO14476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15628400..15628485 | 325..412 | 97 | -> | Minus |
arm_X | 15628586..15628639 | 271..324 | 100 | -> | Minus |
arm_X | 15629132..15629207 | 195..270 | 100 | -> | Minus |
arm_X | 15629280..15629354 | 120..194 | 100 | -> | Minus |
arm_X | 15629422..15629525 | 15..119 | 98 | | Minus |
BO14476.5prime Sequence
422 bp (421 high quality bases) assembled on 2006-05-29
> BO14476.5prime
GAAGTTATCAGTCGACATGGCGACACGTGTGGTGGCAACGGCGACAGTGC
GGGCGGTGAAAGGCCGGAAGTTAATCCCGACGCGGGCCGCTCTGACTCTG
ACACCCGCGGCGGTGCTACGCATCAAGACGCTTCTGCAGGACAAGCCGGA
CATGGTTGGCCTAAAGGTGGGCGTACGGCAGCGAGGATGCAATGGTCTGT
CCTACACGCTGGACTATGCCAGCCAAAAAGACAAGTTGGATGAGGAGGTG
GTCCAGGATGGCGTCAAGGTCTTCATCGACAAGAAAGCGCAGTTGTCGCT
GCTGGGTACCGAGATGGACTTTGTGGAATCGAAGCTGTCCAGCGAGTTCG
TGTTTAACAATCCGAACATTAAGGGCACATGCGGCTGCGGCGAATCGTTC
AGCATGGCAAGCTTTCTAGACC
BO14476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8198-PA | 393 | l(1)G0136-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..489 | 17..406 | 1950 | 100 | Plus |
l(1)G0136-RB | 783 | CG8198-RB | 100..492 | 17..406 | 1910 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735489 | 305..406 | 510 | 100 | Plus |
X | 23542271 | X | 15734369..15734452 | 17..100 | 420 | 100 | Plus |
X | 23542271 | X | 15735245..15735324 | 229..308 | 400 | 100 | Plus |
X | 23542271 | X | 15735098..15735174 | 154..230 | 385 | 100 | Plus |
X | 23542271 | X | 15734552..15734608 | 100..156 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:37:56 has no hits.
BO14476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:09 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:26 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8198-PA | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:37 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..492 | 13..410 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:06 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 98..492 | 13..410 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:06 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15734367..15734452 | 13..100 | 97 | -> | Plus |
X | 15734553..15734606 | 101..154 | 100 | -> | Plus |
X | 15735099..15735174 | 155..230 | 100 | -> | Plus |
X | 15735247..15735321 | 231..305 | 100 | -> | Plus |
X | 15735389..15735492 | 306..410 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:37 Download gff for
BO14476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15628400..15628485 | 13..100 | 97 | -> | Plus |
arm_X | 15628586..15628639 | 101..154 | 100 | -> | Plus |
arm_X | 15629132..15629207 | 155..230 | 100 | -> | Plus |
arm_X | 15629280..15629354 | 231..305 | 100 | -> | Plus |
arm_X | 15629422..15629525 | 306..410 | 98 | | Plus |
BO14476.complete Sequence
424 bp assembled on 2006-10-11
GenBank Submission: FJ638728
> BO14476.complete
GAAGTTATCAGTCGACATGGCGACACGTGTGGTGGCAACGGCGACAGTGC
GGGCGGTGAAAGGCCGGAAGTTAATCCCGACGCGGGCCGCTCTGACTCTG
ACACCCGCGGCGGTGCTACGCATCAAGACGCTTCTGCAGGACAAGCCGGA
CATGGTTGGCCTAAAGGTGGGCGTACGGCAGCGAGGATGCAATGGTCTGT
CCTACACGCTGGACTATGCCAGCCAAAAAGACAAGTTGGATGAGGAGGTG
GTCCAGGATGGCGTCAAGGTCTTCATCGACAAGAAAGCGCAGTTGTCGCT
GCTGGGTACCGAGATGGACTTTGTGGAATCGAAGCTGTCCAGCGAGTTCG
TGTTTAACAATCCGAACATTAAGGGCACATGCGGCTGCGGCGAATCGTTC
AGCATGGCAAGCTTTCTAGACCAT
BO14476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 393 | CG8198-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
l(1)G0136-RB | 396 | CG8198-PB | 1..393 | 17..406 | 1885 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-RA | 780 | CG8198-RA | 100..489 | 17..406 | 1950 | 100 | Plus |
l(1)G0136-RB | 783 | CG8198-RB | 100..492 | 17..406 | 1885 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15735388..15735489 | 305..406 | 510 | 100 | Plus |
X | 23542271 | X | 15734369..15734452 | 17..100 | 420 | 100 | Plus |
X | 23542271 | X | 15735245..15735324 | 229..308 | 400 | 100 | Plus |
X | 23542271 | X | 15735098..15735174 | 154..230 | 385 | 100 | Plus |
X | 23542271 | X | 15734552..15734608 | 100..156 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:05:04 has no hits.
BO14476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:01 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:45 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 88..482 | 13..410 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:00 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 100..489 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:02 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 88..482 | 13..410 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:16 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0136-RA | 100..489 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:16 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15734553..15734606 | 101..154 | 100 | -> | Plus |
X | 15735099..15735174 | 155..230 | 100 | -> | Plus |
X | 15735247..15735321 | 231..305 | 100 | -> | Plus |
X | 15735389..15735489 | 306..408 | 98 | | Plus |
X | 15734369..15734452 | 17..100 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:00 Download gff for
BO14476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15628402..15628485 | 17..100 | 100 | -> | Plus |
arm_X | 15628586..15628639 | 101..154 | 100 | -> | Plus |
arm_X | 15629132..15629207 | 155..230 | 100 | -> | Plus |
arm_X | 15629280..15629354 | 231..305 | 100 | -> | Plus |
arm_X | 15629422..15629522 | 306..408 | 98 | | Plus |
BO14476.pep Sequence
Translation from 16 to 424
> BO14476.pep
MATRVVATATVRAVKGRKLIPTRAALTLTPAAVLRIKTLLQDKPDMVGLK
VGVRQRGCNGLSYTLDYASQKDKLDEEVVQDGVKVFIDKKAQLSLLGTEM
DFVESKLSSEFVFNNPNIKGTCGCGESFSMASFLDH
BO14476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0136-PA | 130 | CG8198-PA | 1..130 | 1..130 | 651 | 100 | Plus |
l(1)G0136-PB | 131 | CG8198-PB | 1..131 | 1..130 | 639 | 99.2 | Plus |