Clone Sequence Records
BO14477.3prime Sequence
891 bp (797 high quality bases) assembled on 2006-05-29
> BO14477.3prime
ATGGTCTAGAAAGCTTGCCGAAGTTTTCTCAGTTCCAGGCTTCAAAGAGA
ATTCGATGTGTGAGTTCGTAGCTTCTTCATTTGTAATATTTGGGTTGGCT
GCATCTGGAACTTGTTGTTCCTTTTCTCCCGCATCGCTTGGCTTATGGAC
CAATTCAGCATTGCTTAAAGTTCTGAGCCGAGAATAGCTAGAGCCCTGTT
CTACCAGCAAAATCTCCGATTTCTCCCTTTTCTCAGTGTCCGCCCACATG
GAAGATCGCCGGGCTAGCTTCCGATCCATTTGAATGGGTTTCATTGTGGC
CTCGCTGTTCTCACTTGACCGAGTTGAAACAAGGCTAACAGTGCTCCTGT
CCTCGATTTTGGCCCACAAGCTCGAGGAATCGCTGGAGCCGCGCCAGGCT
GAAGCAGACCTGCGCATCTTATTGGCCTGCTCTTCCATGTACACACTGTA
CTCCGTGTCCACCGGTGTGATATCCGATTCACTGGTGGTTATTGTTGGCG
TTGATAGAAAACTCTCGTCACTCTCGATCTGATGCAGCGAAAAGAACTTT
TTACGCGCATCCCCAATGAACTGCCACATGCGGACTATAAAGTGCGGCTG
CTCCACCTCCGCGTTCGGCCGGAAGTACAGGATCTGAGAATTGGCCAACT
TATAGTAGCACCTGCAGCATTTGCATAGAAAGTCGTCCACTGGCTTGGAA
AGCACAAATAGCCCGGTTGAACCAGACTCTGTTCCCTCAAAGTACTTACG
GCCAGTCGCCTGACGTTTCCAGTCGCCGGGTTCCATGCGCATCAGCAGGT
CCAACACGTGGAACATGTGCATCAGGTACATGGTGCCAGTAACCAGCGCA
GCGATGCTCTGCTGCTTGCAGTGCGCAAAGTGCGGATGTTC
BO14477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 1197 | CG14000-RA | 322..1194 | 891..19 | 4340 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 367..1239 | 891..19 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909051..5909923 | 19..891 | 4350 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:02:01 has no hits.
BO14477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:10 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 322..1197 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:28 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 322..1197 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:30 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 367..1246 | 10..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:02 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 367..1246 | 10..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:02 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909044..5909923 | 10..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:30 Download gff for
BO14477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909044..5909923 | 10..891 | 99 | | Plus |
BO14477.5prime Sequence
861 bp (794 high quality bases) assembled on 2006-05-29
> BO14477.5prime
GAAGTTATCAGTCGACATGAACCAGGTTTGGGTGTTTTTTAAACTCATCG
AGGTGTTGCTGGGCAGTGTTTGTATGTTTTTCCACATACGCGGCTCATCC
TACTGGCCAGAGCGTACTCCTCATGTGATCCTATATTGTGCCACATTTTC
GTCCTTTACGGCGCTCGCCGCTCTAGGCGCGTTCCGACTGCTATTGGCTA
GGAGTACGGTGCTCTCCTCCCAGCTCCTGCTCACACTGAGTGCCGTGCTG
TCGCACTATTTCTGCGGCGTGCTGATAATGCGCACCGCCATGCTGGACCC
TCACCTGGCCTTCATCAATTCTACCATCGAGTATCTGGAACATCCGCACT
TTGCGCACTGCAAGCAGCAGAGCATCGCTGCGCTGGTTACTGGCACCATG
TACCTGATGCACATGTTCCACGTGTTCGACCTGCTGATGCGCATGGAACC
CGGCGACTGGAAACGTCAGGCGACTGGCCGTAAGTACTTTGAGGGAACAG
AGTCTGGTTCAACCGGGCTATTTGTGCTTTCCAAGCCAGTGGACGACTTT
CTATGCAAATGCTGCAGGTGCTACTATAAGTTGGCCAATTCTCAGATCCT
GTACTTCCGGCCGAACGCGGAGGTGGAGCAGCCGCACTTTATAGTCCGCA
TGTGGCAGTTCATTGGGGATGCGCGTAAAAAGTTCTTTTCGCTGCATCAG
ATCGAGAGTGACGAGAGTTTTCTATCAACGCCAACAATAACCACCAGTGA
ATCGGATATCACACCGGTGGACACGGAGTACAGTGTGTACATGGAAGAGC
AGGCCAATAAGATGCGCANGTCTGCTTCAGCCTGNCGCGGCTCCAGCGAT
TCCTCGAGCTT
BO14477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 1197 | CG14000-RA | 1..845 | 17..861 | 4187 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 46..890 | 17..861 | 4203 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909400..5910244 | 861..17 | 4203 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:00:20 has no hits.
BO14477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:11 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:29 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:53:04 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..890 | 8..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:58 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..890 | 8..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:58 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909400..5910252 | 8..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:53:04 Download gff for
BO14477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909400..5910252 | 8..861 | 99 | | Minus |
BO14477.complete Sequence
1228 bp assembled on 2006-10-11
GenBank Submission: FJ633144
> BO14477.complete
GAAGTTATCAGTCGACATGAACCAGGTTTGGGTGTTTTTTAAACTCATCG
AGGTGTTGCTGGGCAGTGTTTGTATGTTTTTCCACATACGCGGCTCATCC
TACTGGCCAGAGCGTACTCCTCATGTGATCCTATATTGTGCCACATTTTC
GTCCTTTACGGCGCTCGCCGCTCTAGGCGCGTTCCGACTGCTATTGGCTA
GGAGTACGGTGCTCTCCTCCCAGCTCCTGCTCACACTGAGTGCCGTGCTG
TCGCACTATTTCTGCGGCGTGCTGATAATGCGCACCGCCATGCTGGACCC
TCACCTGGCCTTCATCAATTCTACCATCGAGTATCTGGAACATCCGCACT
TTGCGCACTGCAAGCAGCAGAGCATCGCTGCGCTGGTTACTGGCACCATG
TACCTGATGCACATGTTCCACGTGTTCGACCTGCTGATGCGCATGGAACC
CGGCGACTGGAAACGTCAGGCGACTGGCCGTAAGTACTTTGAGGGAACAG
AGTCTGGTTCAACCGGGCTATTTGTGCTTTCCAAGCCAGTGGACGACTTT
CTATGCAAATGCTGCAGGTGCTACTATAAGTTGGCCAATTCTCAGATCCT
GTACTTCCGGCCGAACGCGGAGGTGGAGCAGCCGCACTTTATAGTCCGCA
TGTGGCAGTTCATTGGGGATGCGCGTAAAAAGTTCTTTTCGCTGCATCAG
ATCGAGAGTGACGAGAGTTTTCTATCAACGCCAACAATAACCACCAGTGA
ATCGGATATCACACCGGTGGACACGGAGTACAGTGTGTACATGGAAGAGC
AGGCCAATAAGATGCGCAGGTCTGCTTCAGCCTGGCGCGGCTCCAGCGAT
TCCTCGAGCTTGTGGGCCAAAATCGAGGACAGGAGCACTGTTAGCCTTGT
TTCAACTCGGTCAAGTGAGAACAGCGAGGCCACAATGAAACCCATTCAAA
TGGATCGGAAGCTAGCCCGGCGATCTTCCATGTGGGCGGACACTGAGAAA
AGGGAGAAATCGGAGATTTTGCTGGTAGAACAGGGCTCTAGCTATTCTCG
GCTCAGAACTTTAAGCAATGCTGAATTGGTCCATAAGCCAAGCGATGCGG
GAGAAAAGGAACAACAAGTTCCAGATGCAGCCAACCCAAATATTACAAAT
GAAGAAGCTACGAACTCACACATCGAATTCTCTTTGAAGCCTGGAACTGA
GAAAACTTCGGCAAGCTTTCTAGACCAT
BO14477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1197 | CG14000-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-RA | 1363 | CG14000-RA | 46..1239 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5909051..5910244 | 1210..17 | 5970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:11:54 has no hits.
BO14477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:49 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 1..1197 | 17..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:26 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..1246 | 8..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:46 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 46..1239 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:49 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 38..1246 | 8..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:33 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14000-RA | 46..1239 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:33 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5909048..5910244 | 17..1212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:46 Download gff for
BO14477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5909048..5910244 | 17..1212 | 99 | | Minus |
BO14477.pep Sequence
Translation from 16 to 1228
> BO14477.pep
MNQVWVFFKLIEVLLGSVCMFFHIRGSSYWPERTPHVILYCATFSSFTAL
AALGAFRLLLARSTVLSSQLLLTLSAVLSHYFCGVLIMRTAMLDPHLAFI
NSTIEYLEHPHFAHCKQQSIAALVTGTMYLMHMFHVFDLLMRMEPGDWKR
QATGRKYFEGTESGSTGLFVLSKPVDDFLCKCCRCYYKLANSQILYFRPN
AEVEQPHFIVRMWQFIGDARKKFFSLHQIESDESFLSTPTITTSESDITP
VDTEYSVYMEEQANKMRRSASAWRGSSDSSSLWAKIEDRSTVSLVSTRSS
ENSEATMKPIQMDRKLARRSSMWADTEKREKSEILLVEQGSSYSRLRTLS
NAELVHKPSDAGEKEQQVPDAANPNITNEEATNSHIEFSLKPGTEKTSAS
FLDH
BO14477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14000-PA | 398 | CG14000-PA | 1..398 | 1..398 | 2067 | 100 | Plus |
