Clone BO14479 Report

Search the DGRC for BO14479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:79
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO14479.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO14479.5prime Sequence

772 bp (681 high quality bases) assembled on 2006-05-29

> BO14479.5prime
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTC

BO14479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PA 816 CG9863-RA 1..756 17..772 3755 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 1134 CG9863-RB 22..777 17..772 3765 99.9 Plus
CG3502-RB 3171 CG3502-RB 231..345 772..658 575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346656..23347411 17..772 3765 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:47:16 has no hits.

BO14479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:14 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-PA 1..756 17..772 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:35 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-PA 1..756 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:04 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..777 3..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:04 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..777 3..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:04 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23346642..23347411 3..772 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:04 Download gff for BO14479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234165..19234934 3..772 99   Plus

BO14479.3prime Sequence

596 bp (594 high quality bases) assembled on 2006-05-29

> BO14479.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTCGAACCGGTTTCAGAAAGTCAATAA
CGCGAAGGTTCAGTGTTTTCGGACTGAAGCTGATCAGCTTGAAGCGCTGC
ACCTTGTAGGAGTCCACCAGCCAGCCACTGTCCTGATCTTCACTTTCTAT
ATCCCGAGGATCCTGGGGATCGCCCAGTTCCATAGAGAAGGTGAGCACTA
TTTCGGCAATGGCCAGGCGGCAGTTGCTCGGTTCGAACTTATCATCGATC
TGGGAGTTCACCAGAACGCTCTGAATCCGCTGGAGCATTTCCTCCTTTTC
CTGCTCCGTTCCGAGATCGAGGAGGTTGCGCAGGCCGACAAAGAGCATGT
CCACCATGACATAGTAGCGACCATCGATCCAGCGACGCACCACCCTCACG
GGAAGAGCATGCCGCAGGTGTTCCTTCTGAAAGCGAACCAAACTGCAGTA
GGGACTCCTCATCTGGGACAAGCCGTAGATGTCGGCCGATCCCCGCTCCG
TGCAGCAACTCCGGATGCAGGGCCAGTCCGCCTGGCGCACTGCATCGATC
ATGGTGACCGCCGCCTGGCGAGTGCCCTCATGGAATCCGCCCTCGT

BO14479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PA 816 CG9863-RA 236..813 596..19 2890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 1134 CG9863-RB 257..834 596..19 2890 100 Minus
CG3502-RB 3171 CG3502-RB 174..345 19..190 860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346891..23347468 596..19 2890 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:20:29 has no hits.

BO14479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:13 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-PA 236..816 18..596 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:33 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-PA 236..816 18..596 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:06:12 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 257..838 13..596 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:28 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 257..838 13..596 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:28 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23346891..23347472 13..596 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:06:12 Download gff for BO14479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234414..19234995 13..596 99   Minus

BO14479.complete Sequence

847 bp assembled on 2006-10-11

GenBank Submission: FJ633145

> BO14479.complete
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTCAGTCCGAAAACACTGAACCTTCGCGTTA
TTGACTTTCTGAAACCGGTTCGACAGAAGGCAAGCTTTCTAGACCAT

BO14479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 804 CG9863-PB 1..801 29..829 3990 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-RB 1134 CG9863-RB 22..834 17..829 4050 99.9 Plus
CG3502-RB 3171 CG3502-RB 174..345 829..658 860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23346656..23347468 17..829 4050 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:57:37 has no hits.

BO14479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:53 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 1..804 29..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:28 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..838 3..835 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:42 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..834 24..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:53 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 8..838 3..835 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:47 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9863-RB 29..834 24..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:47 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23346663..23347468 24..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:42 Download gff for BO14479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19234186..19234991 24..831 99   Plus

BO14479.pep Sequence

Translation from 16 to 847

> BO14479.pep
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQKASFLDH

BO14479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9863-PB 267 CG9863-PB 1..267 5..271 1407 100 Plus
CG3092-PA 347 CG3092-PA 91..244 64..215 206 35.7 Plus
CG30412-PC 295 CG30412-PC 77..272 58..254 169 29.2 Plus
CG30412-PB 301 CG30412-PB 83..278 58..254 169 29.2 Plus