Clone Sequence Records
BO14479.5prime Sequence
772 bp (681 high quality bases) assembled on 2006-05-29
> BO14479.5prime
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTC
BO14479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-PA | 816 | CG9863-RA | 1..756 | 17..772 | 3755 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 1134 | CG9863-RB | 22..777 | 17..772 | 3765 | 99.9 | Plus |
CG3502-RB | 3171 | CG3502-RB | 231..345 | 772..658 | 575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23346656..23347411 | 17..772 | 3765 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:47:16 has no hits.
BO14479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:14 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:35 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-PA | 1..756 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:04 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..777 | 3..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:04 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..777 | 3..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:04 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23346642..23347411 | 3..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:04 Download gff for
BO14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19234165..19234934 | 3..772 | 99 | | Plus |
BO14479.3prime Sequence
596 bp (594 high quality bases) assembled on 2006-05-29
> BO14479.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTCGAACCGGTTTCAGAAAGTCAATAA
CGCGAAGGTTCAGTGTTTTCGGACTGAAGCTGATCAGCTTGAAGCGCTGC
ACCTTGTAGGAGTCCACCAGCCAGCCACTGTCCTGATCTTCACTTTCTAT
ATCCCGAGGATCCTGGGGATCGCCCAGTTCCATAGAGAAGGTGAGCACTA
TTTCGGCAATGGCCAGGCGGCAGTTGCTCGGTTCGAACTTATCATCGATC
TGGGAGTTCACCAGAACGCTCTGAATCCGCTGGAGCATTTCCTCCTTTTC
CTGCTCCGTTCCGAGATCGAGGAGGTTGCGCAGGCCGACAAAGAGCATGT
CCACCATGACATAGTAGCGACCATCGATCCAGCGACGCACCACCCTCACG
GGAAGAGCATGCCGCAGGTGTTCCTTCTGAAAGCGAACCAAACTGCAGTA
GGGACTCCTCATCTGGGACAAGCCGTAGATGTCGGCCGATCCCCGCTCCG
TGCAGCAACTCCGGATGCAGGGCCAGTCCGCCTGGCGCACTGCATCGATC
ATGGTGACCGCCGCCTGGCGAGTGCCCTCATGGAATCCGCCCTCGT
BO14479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-PA | 816 | CG9863-RA | 236..813 | 596..19 | 2890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 1134 | CG9863-RB | 257..834 | 596..19 | 2890 | 100 | Minus |
CG3502-RB | 3171 | CG3502-RB | 174..345 | 19..190 | 860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23346891..23347468 | 596..19 | 2890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:20:29 has no hits.
BO14479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:13 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-PA | 236..816 | 18..596 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:33 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-PA | 236..816 | 18..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:06:12 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 257..838 | 13..596 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:28 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 257..838 | 13..596 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:28 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23346891..23347472 | 13..596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:06:12 Download gff for
BO14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19234414..19234995 | 13..596 | 99 | | Minus |
BO14479.complete Sequence
847 bp assembled on 2006-10-11
GenBank Submission: FJ633145
> BO14479.complete
GAAGTTATCAGTCGACATGTTTTGGAATATGTTTTCGAGGTTCCTCCGTG
GTTCGTCCACCTCTCAAATTACGTGTTTAGTGCGGGGTGGTGGCTGCAAT
TCGAACACATCCCAATCCCAGCCACACCGCAATGTGAGTCTTTTCACAGG
AAGACAACCCCACTGGAAACTCCGCGTGATGCAGTTTCTCAGTGGCCTGC
GACACCGGTACTGCCTGTGGCGCCTCCGCCGCCTGCTGGGCGTGGCCTTC
GACGAGGGCGGATTCCATGAGGGCACTCGCCAGGCGGCGGTCACCATGAT
CGATGCAGTGCGCCAGGCGGACTGGCCCTGCATCCGGAGTTGCTGCACGG
AGCGGGGATCGGCCGACATCTACGGCTTGTCCCAGATGAGGAGTCCCTAC
TGCAGTTTGGTTCGCTTTCAGAAGGAACACCTGCGGCATGCTCTTCCCGT
GAGGGTGGTGCGTCGCTGGATCGATGGTCGCTACTATGTCATGGTGGACA
TGCTCTTTGTCGGCCTGCGCAACCTCCTCGATCTCGGAACGGAGCAGGAA
AAGGAGGAAATGCTCCAGCGGATTCAGAGCGTTCTGGTGAACTCCCAGAT
CGATGATAAGTTCGAACCGAGCAACTGCCGCCTGGCCATTGCCGAAATAG
TGCTCACCTTCTCTATGGAACTGGGCGATCCCCAGGATCCTCGGGATATA
GAAAGTGAAGATCAGGACAGTGGCTGGCTGGTGGACTCCTACAAGGTGCA
GCGCTTCAAGCTGATCAGCTTCAGTCCGAAAACACTGAACCTTCGCGTTA
TTGACTTTCTGAAACCGGTTCGACAGAAGGCAAGCTTTCTAGACCAT
BO14479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 804 | CG9863-PB | 1..801 | 29..829 | 3990 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-RB | 1134 | CG9863-RB | 22..834 | 17..829 | 4050 | 99.9 | Plus |
CG3502-RB | 3171 | CG3502-RB | 174..345 | 829..658 | 860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23346656..23347468 | 17..829 | 4050 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:37 has no hits.
BO14479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:53 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 1..804 | 29..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:28 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..838 | 3..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:42 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..834 | 24..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:53 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 8..838 | 3..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:47 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9863-RB | 29..834 | 24..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:47 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23346663..23347468 | 24..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:42 Download gff for
BO14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19234186..19234991 | 24..831 | 99 | | Plus |
BO14479.pep Sequence
Translation from 16 to 847
> BO14479.pep
MFWNMFSRFLRGSSTSQITCLVRGGGCNSNTSQSQPHRNVSLFTGRQPHW
KLRVMQFLSGLRHRYCLWRLRRLLGVAFDEGGFHEGTRQAAVTMIDAVRQ
ADWPCIRSCCTERGSADIYGLSQMRSPYCSLVRFQKEHLRHALPVRVVRR
WIDGRYYVMVDMLFVGLRNLLDLGTEQEKEEMLQRIQSVLVNSQIDDKFE
PSNCRLAIAEIVLTFSMELGDPQDPRDIESEDQDSGWLVDSYKVQRFKLI
SFSPKTLNLRVIDFLKPVRQKASFLDH
BO14479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9863-PB | 267 | CG9863-PB | 1..267 | 5..271 | 1407 | 100 | Plus |
CG3092-PA | 347 | CG3092-PA | 91..244 | 64..215 | 206 | 35.7 | Plus |
CG30412-PC | 295 | CG30412-PC | 77..272 | 58..254 | 169 | 29.2 | Plus |
CG30412-PB | 301 | CG30412-PB | 83..278 | 58..254 | 169 | 29.2 | Plus |