Clone BO14481 Report

Search the DGRC for BO14481

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG16996-RA
Protein status:BO14481.pep: Imported from assembly
Sequenced Size:844

Clone Sequence Records

BO14481.3prime Sequence

590 bp (530 high quality bases) assembled on 2006-05-29

> BO14481.3prime
ATGGTCTAGAAAGCTTGCGGACACCTGCTGGTTAGCCGATATCCACGATA
TAAACGACGAGACCTGCACGTAAACCGACGGTGAGTTGGCCTGACCACAA
GGTAACTTGCCCCAGGACACGATGCCAATAAGGACATTGCCCTGGACCAG
TGGTCCTCCCGAATCCGAGGTGCAAATGCTAACGCCGCCAGTTAGAGGAC
CAGTGCACAGATTGGTCGAGTGGACATCGCTGCCCTTGGTGCCCAGGGCG
CTTTCGCAGGAGCTCAGCGAAATGATAGGCACATTGGTGGCCACCTGCAG
GGTCGACGGATAGGAGGCGGTATTCGTGGTGCTAGTGCTGCCCCATCCGT
ACAGATTGGCGGTGCCAGTGGGCACCACTCCCGAGGATGGTAGCGTCACT
GGGGCAACGGCGGCGCTCCAAACGAAGGCGGTGGGCGTGTAGATCATTCC
GATGTCATAGGGCACAGTTCCGCCGGTGTACAAGTCATTGATCACGAAGT
ACGTGATGCTCCGCGTCTGCGTAGTGCTTGCAGTTCCGTCCACCGCGATG
CTTCCGGCCACCAAGGTGCTGCCCAGCACCTGGTTACTAT

BO14481.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG16996-PA 813 CG16996-RA 239..810 590..19 2835 99.8 Minus
CG16997-PA 822 CG16997-RA 364..417 477..424 220 96.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 1248 CG16996-RB 465..1036 590..19 2845 99.8 Minus
Phae1-RA 904 CG16996-RA 263..834 590..19 2845 99.8 Minus
Phae2-RC 1147 CG16997-RC 265..826 590..29 830 77.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12109881..12110452 590..19 2845 99.8 Minus
2L 23513712 2L 12111374..12111935 590..29 815 76.3 Minus
Blast to na_te.dros performed on 2015-01-31 11:02:30 has no hits.

BO14481.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:18 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16996-PA 239..813 15..590 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:39 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16996-PA 239..813 15..590 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:45:45 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 425..999 15..590 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:53:05 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 263..837 15..590 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:53:05 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12109881..12110455 15..590 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:45:45 Download gff for BO14481.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12109881..12110455 15..590 99   Minus

BO14481.complete Sequence

844 bp assembled on 2010-07-02

GenBank Submission: KX796464

> BO14481.complete
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTTATTGGCATCGTGTCCTGGGGCAAGTTACCTTGTGG
TCAGGCCAACTCACCGTCGGTTTACGTGCAGGTCTCGTCGTTTATATCGT
GGATATCGGCTAACCAGCAGGTGTCCGCAAGCTTTCTAGACCAT

BO14481.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 813 CG16996-PB 1..810 17..826 4035 99.9 Plus
Phae1-RA 813 CG16996-PA 1..810 17..826 4035 99.9 Plus
Phae2-RC 798 CG16997-PC 81..788 109..816 1065 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-RB 1248 CG16996-RB 227..1036 17..826 4035 99.9 Plus
Phae1-RA 904 CG16996-RA 25..834 17..826 4035 99.9 Plus
Phae2-RC 1147 CG16997-RC 119..826 109..816 1065 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12109643..12110452 17..826 4035 99.9 Plus
2L 23513712 2L 12111228..12111935 109..816 1065 76.7 Plus
Blast to na_te.dros performed on 2014-11-28 02:23:07 has no hits.

BO14481.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:10 Download gff for BO14481.complete
Subject Subject Range Query Range Percent Splice Strand
CG16996-RA 192..996 22..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:03 Download gff for BO14481.complete
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 192..996 22..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:06 Download gff for BO14481.complete
Subject Subject Range Query Range Percent Splice Strand
Phae1-RA 30..834 22..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:06 Download gff for BO14481.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12109648..12110452 22..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:03 Download gff for BO14481.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12109648..12110452 22..828 99   Plus

BO14481.pep Sequence

Translation from 16 to 844

> BO14481.pep
MLANGQQTKSLASGLLLLLGICRISGVAIGAPEGRVVGGSPAAVNSAPYA
VSMQYGGTHYCAASILNANWLVTAAHCLTNSNQVLGSTLVAGSIAVDGTA
STTQTRSITYFVINDLYTGGTVPYDIGMIYTPTAFVWSAAVAPVTLPSSG
VVPTGTANLYGWGSTSTTNTASYPSTLQVATNVPIISLSSCESALGTKGS
DVHSTNLCTGPLTGGVSICTSDSGGPLVQGNVLIGIVSWGKLPCGQANSP
SVYVQVSSFISWISANQQVSASFLDH

BO14481.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Phae1-PB 270 CG16996-PB 1..270 1..270 1390 100 Plus
Phae1-PA 270 CG16996-PA 1..270 1..270 1390 100 Plus
Phae2-PC 265 CG16997-PC 5..264 9..268 1082 78.5 Plus
Phae2-PB 265 CG16997-PB 5..264 9..268 1082 78.5 Plus
CG7142-PA 334 CG7142-PA 86..330 42..272 608 50 Plus