Clone Sequence Records
BO14481.3prime Sequence
590 bp (530 high quality bases) assembled on 2006-05-29
> BO14481.3prime
ATGGTCTAGAAAGCTTGCGGACACCTGCTGGTTAGCCGATATCCACGATA
TAAACGACGAGACCTGCACGTAAACCGACGGTGAGTTGGCCTGACCACAA
GGTAACTTGCCCCAGGACACGATGCCAATAAGGACATTGCCCTGGACCAG
TGGTCCTCCCGAATCCGAGGTGCAAATGCTAACGCCGCCAGTTAGAGGAC
CAGTGCACAGATTGGTCGAGTGGACATCGCTGCCCTTGGTGCCCAGGGCG
CTTTCGCAGGAGCTCAGCGAAATGATAGGCACATTGGTGGCCACCTGCAG
GGTCGACGGATAGGAGGCGGTATTCGTGGTGCTAGTGCTGCCCCATCCGT
ACAGATTGGCGGTGCCAGTGGGCACCACTCCCGAGGATGGTAGCGTCACT
GGGGCAACGGCGGCGCTCCAAACGAAGGCGGTGGGCGTGTAGATCATTCC
GATGTCATAGGGCACAGTTCCGCCGGTGTACAAGTCATTGATCACGAAGT
ACGTGATGCTCCGCGTCTGCGTAGTGCTTGCAGTTCCGTCCACCGCGATG
CTTCCGGCCACCAAGGTGCTGCCCAGCACCTGGTTACTAT
BO14481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16996-PA | 813 | CG16996-RA | 239..810 | 590..19 | 2835 | 99.8 | Minus |
CG16997-PA | 822 | CG16997-RA | 364..417 | 477..424 | 220 | 96.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 1248 | CG16996-RB | 465..1036 | 590..19 | 2845 | 99.8 | Minus |
Phae1-RA | 904 | CG16996-RA | 263..834 | 590..19 | 2845 | 99.8 | Minus |
Phae2-RC | 1147 | CG16997-RC | 265..826 | 590..29 | 830 | 77.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12109881..12110452 | 590..19 | 2845 | 99.8 | Minus |
2L | 23513712 | 2L | 12111374..12111935 | 590..29 | 815 | 76.3 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:02:30 has no hits.
BO14481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:18 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-PA | 239..813 | 15..590 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:39 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-PA | 239..813 | 15..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:45:45 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 425..999 | 15..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:53:05 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 263..837 | 15..590 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:53:05 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12109881..12110455 | 15..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:45:45 Download gff for
BO14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12109881..12110455 | 15..590 | 99 | | Minus |
BO14481.complete Sequence
844 bp assembled on 2010-07-02
GenBank Submission: KX796464
> BO14481.complete
GAAGTTATCAGTCGACATGTTAGCGAACGGACAGCAAACAAAGTCGTTGG
CCAGTGGGCTTCTTCTCCTACTGGGCATATGCCGAATATCCGGAGTGGCT
ATCGGCGCACCCGAGGGGCGTGTCGTGGGTGGATCTCCGGCAGCGGTGAA
TAGTGCTCCCTATGCGGTGTCCATGCAGTACGGTGGCACCCATTACTGTG
CCGCCAGCATTCTGAATGCCAACTGGCTAGTCACCGCTGCCCACTGCCTG
ACCAATAGTAACCAGGTGCTGGGCAGCACCTTGGTGGCCGGAAGCATCGC
GGTGGACGGAACTGCAAGCACTACGCAGACGCGGAGCATCACGTACTTCG
TGATCAATGACTTGTACACCGGCGGAACTGTGCCCTATGACATCGGAATG
ATCTACACGCCCACCGCCTTCGTTTGGAGCGCCGCCGTTGCCCCAGTGAC
GCTACCATCCTCGGGAGTGGTGCCCACTGGCACCGCCAATCTGTACGGAT
GGGGCAGCACTAGCACCACGAATACCGCCTCCTATCCGTCGACCCTGCAG
GTGGCCACCAATGTGCCTATCATTTCGCTGAGCTCCTGCGAAAGCGCCCT
GGGCACCAAGGGCAGCGATGTCCACTCGACCAATCTGTGCACTGGTCCTC
TAACTGGCGGCGTTAGCATTTGCACCTCGGATTCGGGAGGACCACTGGTC
CAGGGCAATGTCCTTATTGGCATCGTGTCCTGGGGCAAGTTACCTTGTGG
TCAGGCCAACTCACCGTCGGTTTACGTGCAGGTCTCGTCGTTTATATCGT
GGATATCGGCTAACCAGCAGGTGTCCGCAAGCTTTCTAGACCAT
BO14481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 813 | CG16996-PB | 1..810 | 17..826 | 4035 | 99.9 | Plus |
Phae1-RA | 813 | CG16996-PA | 1..810 | 17..826 | 4035 | 99.9 | Plus |
Phae2-RC | 798 | CG16997-PC | 81..788 | 109..816 | 1065 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-RB | 1248 | CG16996-RB | 227..1036 | 17..826 | 4035 | 99.9 | Plus |
Phae1-RA | 904 | CG16996-RA | 25..834 | 17..826 | 4035 | 99.9 | Plus |
Phae2-RC | 1147 | CG16997-RC | 119..826 | 109..816 | 1065 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12109643..12110452 | 17..826 | 4035 | 99.9 | Plus |
2L | 23513712 | 2L | 12111228..12111935 | 109..816 | 1065 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:07 has no hits.
BO14481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:10 Download gff for
BO14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16996-RA | 192..996 | 22..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:03 Download gff for
BO14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 192..996 | 22..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:06 Download gff for
BO14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phae1-RA | 30..834 | 22..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:06 Download gff for
BO14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12109648..12110452 | 22..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:03 Download gff for
BO14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12109648..12110452 | 22..828 | 99 | | Plus |
BO14481.pep Sequence
Translation from 16 to 844
> BO14481.pep
MLANGQQTKSLASGLLLLLGICRISGVAIGAPEGRVVGGSPAAVNSAPYA
VSMQYGGTHYCAASILNANWLVTAAHCLTNSNQVLGSTLVAGSIAVDGTA
STTQTRSITYFVINDLYTGGTVPYDIGMIYTPTAFVWSAAVAPVTLPSSG
VVPTGTANLYGWGSTSTTNTASYPSTLQVATNVPIISLSSCESALGTKGS
DVHSTNLCTGPLTGGVSICTSDSGGPLVQGNVLIGIVSWGKLPCGQANSP
SVYVQVSSFISWISANQQVSASFLDH
BO14481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phae1-PB | 270 | CG16996-PB | 1..270 | 1..270 | 1390 | 100 | Plus |
Phae1-PA | 270 | CG16996-PA | 1..270 | 1..270 | 1390 | 100 | Plus |
Phae2-PC | 265 | CG16997-PC | 5..264 | 9..268 | 1082 | 78.5 | Plus |
Phae2-PB | 265 | CG16997-PB | 5..264 | 9..268 | 1082 | 78.5 | Plus |
CG7142-PA | 334 | CG7142-PA | 86..330 | 42..272 | 608 | 50 | Plus |