Clone Sequence Records
BO14482.3prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-29
> BO14482.3prime
ATGGTCTAGAAAGCTTGCAACCCTCTGTTCAAGAGCTCCATTTCCCTCTT
CCCCCGCAAAATTATCTACGGTCTTTGGTTTCTCAAATGGGACTAAATCC
TCGAAAGATCCATCGCCAGCTGCAGAATCTGGTGAATCAATAATCAGTTG
CTCCTTATTTGTGGAAGTATTCCACCATTTTGAATATTCTTTGTGACGCA
ATTCCTTGGCCTTTTCCACCAAATCCAGACAGGTGACCTTGGCACCGTCG
GCCAATTCCTCCGAATAGTTGGGTATGTTTCGAATGATACGAAAAGTGCC
CTTCACTCCTTCATTGTAGTATTTCCGGGATAGCTCACCCACGCTCAGAT
CGCTCTCATCTAACTTCAGCGTTCGTCGCAGAAGTCCAAATACTGGTTGA
AGACCATTGGTGATCTGATCGAGCAGGTGGTCCGTCTCCTCTGTCTTACC
CCAAACTCCAACTCGATTGGTTATGTAGACGGTCATCGAGACCGCTGCAG
TTCGATACATCAGTGTAGTAAACATGTCGACTGATAACT
BO14482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-PA | 510 | CG15296-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-RB | 686 | CG15296-RB | 40..546 | 525..19 | 2535 | 100 | Minus |
CG15296-RA | 690 | CG15296-RA | 44..550 | 525..19 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10565982..10566488 | 19..525 | 2535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:39:01 has no hits.
BO14482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:18 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-PA | 1..510 | 15..525 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:40 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-PA | 1..510 | 15..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:26 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 35..553 | 15..534 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:40 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 35..553 | 15..534 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:40 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10565978..10566497 | 15..534 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:26 Download gff for
BO14482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10460011..10460530 | 15..534 | 98 | | Plus |
BO14482.5prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-29
> BO14482.5prime
GAAGTTATCAGTCGACATGTTTACTACACTGATGTATCGAACTGCAGCGG
TCTCGATGACCGTCTACATAACCAATCGAGTTGGAGTTTGGGGTAAGACA
GAGGAGACGGACCACCTGCTCGATCAGATCACCAATGGTCTTCAACCAGT
ATTTGGACTTCTGCGACGAACGCTGAAGTTAGATGAGAGCGATCTGAGCG
TGGGTGAGCTATCCCGGAAATACTACAATGAAGGAGTGAAGGGCACTTTT
CGTATCATTCGAAACATACCCAACTATTCGGAGGAATTGGCCGACGGTGC
CAAGGTCACCTGTCTGGATTTGGTGGAAAAGGCCAAGGAATTGCGTCACA
AAGAATATTCAAAATGGTGGAATACTTCCACAAATAAGGAGCAACTGATT
ATTGATTCACCAGATTCTGCAGCTGGCGATGGATCTTTCGAGGATTTAGT
CCCATTTGAGAAACCAAAGACCGTAGATAATTTTGCGGGGGAAGAGGGAA
ATGGAGCTCTTGAACAGAGGGTTGCAAGCTTTCTAGACC
BO14482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-PA | 510 | CG15296-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-RB | 686 | CG15296-RB | 40..546 | 17..523 | 2535 | 100 | Plus |
CG15296-RA | 690 | CG15296-RA | 44..550 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10565982..10566488 | 523..17 | 2535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:11:00 has no hits.
BO14482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:19 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-PA | 1..510 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:42 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-PA | 1..510 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:22 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 35..553 | 8..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:35 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 35..553 | 8..527 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:35 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10565978..10566497 | 8..527 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:22 Download gff for
BO14482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10460011..10460530 | 8..527 | 98 | | Minus |
BO14482.complete Sequence
541 bp assembled on 2006-10-11
GenBank Submission: FJ633146
> BO14482.complete
GAAGTTATCAGTCGACATGTTTACTACACTGATGTATCGAACTGCAGCGG
TCTCGATGACCGTCTACATAACCAATCGAGTTGGAGTTTGGGGTAAGACA
GAGGAGACGGACCACCTGCTCGATCAGATCACCAATGGTCTTCAACCAGT
ATTTGGACTTCTGCGACGAACGCTGAAGTTAGATGAGAGCGATCTGAGCG
TGGGTGAGCTATCCCGGAAATACTACAATGAAGGAGTGAAGGGCACTTTT
CGTATCATTCGAAACATACCCAACTATTCGGAGGAATTGGCCGACGGTGC
CAAGGTCACCTGTCTGGATTTGGTGGAAAAGGCCAAGGAATTGCGTCACA
AAGAATATTCAAAATGGTGGAATACTTCCACAAATAAGGAGCAACTGATT
ATTGATTCACCAGATTCTGCAGCTGGCGATGGATCTTTCGAGGATTTAGT
CCCATTTGAGAAACCAAAGACCGTAGATAATTTTGCGGGGGAAGAGGGAA
ATGGAGCTCTTGAACAGAGGGTTGCAAGCTTTCTAGACCAT
BO14482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-RB | 510 | CG15296-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG15296-RA | 510 | CG15296-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-RB | 686 | CG15296-RB | 40..546 | 17..523 | 2535 | 100 | Plus |
CG15296-RA | 690 | CG15296-RA | 44..550 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10565982..10566488 | 523..17 | 2535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:13:55 has no hits.
BO14482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:58 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 1..510 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:58 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 3..521 | 8..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:10 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 50..550 | 23..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:58 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 3..521 | 8..527 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:22 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15296-RA | 50..550 | 23..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:22 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10565980..10566482 | 23..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:10 Download gff for
BO14482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10460013..10460515 | 23..525 | 99 | | Minus |
BO14482.pep Sequence
Translation from 16 to 541
> BO14482.pep
MFTTLMYRTAAVSMTVYITNRVGVWGKTEETDHLLDQITNGLQPVFGLLR
RTLKLDESDLSVGELSRKYYNEGVKGTFRIIRNIPNYSEELADGAKVTCL
DLVEKAKELRHKEYSKWWNTSTNKEQLIIDSPDSAAGDGSFEDLVPFEKP
KTVDNFAGEEGNGALEQRVASFLDH
BO14482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15296-PB | 169 | CG15296-PB | 1..169 | 1..169 | 879 | 100 | Plus |
CG15296-PA | 169 | CG15296-PA | 1..169 | 1..169 | 879 | 100 | Plus |
CG7603-PA | 122 | CG7603-PA | 1..108 | 1..104 | 159 | 36.1 | Plus |