Clone BO14483 Report

Search the DGRC for BO14483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptscpr-C-RA
Protein status:BO14483.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO14483.3prime Sequence

818 bp (700 high quality bases) assembled on 2006-05-29

> BO14483.3prime
ATGGTCTAGAAAGCTTGCCATCGTCTGTGTGTTCTCGATGACCTTCTCGT
TGTCGTAGATCTCCTTGGCGTAGCACAGGTTGGGGTAGTCGTAGGCAGCT
CCATAACGGTTCTTGCACCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGAC
AGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAGT
GGTTGTAAAAGTCCCGGGAGAAGCGCACCGCGGCACATCCCACATGGGTG
TTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCTTTGTTGGGAAG
CTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCAG
CAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTCC
GTCTCGGCTCCGCTGTACTGGAACACGGCGTTGTTCTGGCCGGCGTAGGC
GAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTTA
CGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGCC
ATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACATTGTT
GCGCAGCTCGTTGAAGAGATTGAGTATGAGTTTGTGGTGCGGCTCGATCT
TCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTTG
TTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCGC
TGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGAGACTTAATGG
CCATGTCGACTGATAACT

BO14483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5106-PA 789 scpr-C-RA 1..786 804..19 3830 99.4 Minus
CG17210-PA 789 scpr-B-RA 1..786 804..19 3630 98.4 Minus
CG5207-PA 795 scpr-A-RA 103..792 708..19 3100 97.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..802 804..19 3870 99.5 Minus
scpr-C-RA 910 CG5106-RA 17..802 804..19 3870 99.5 Minus
scpr-B-RA 898 CG17210-RA 13..798 804..19 3750 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226374 690..19 3300 99.4 Minus
3R 32079331 3R 11240141..11240812 19..690 3195 98.4 Plus
3R 32079331 3R 11241384..11242052 687..19 3165 98.2 Minus
3R 32079331 3R 11225536..11225649 804..691 570 100 Minus
3R 32079331 3R 11240866..11240979 691..804 555 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:02 has no hits.

BO14483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:21 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 18..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:44 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 18..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:44 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 13..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:22 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 13..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:22 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 691..804 100 -> Minus
3R 11225703..11226381 15..690 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:44 Download gff for BO14483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 691..804 100 -> Minus
arm_3R 7051425..7052103 15..690 98 -> Minus

BO14483.5prime Sequence

819 bp (793 high quality bases) assembled on 2006-05-29

> BO14483.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCA

BO14483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5106-PA 789 scpr-C-RA 1..786 17..802 3830 99.4 Plus
CG17210-PA 789 scpr-B-RA 1..786 17..802 3630 98.4 Plus
CG5207-PA 795 scpr-A-RA 103..792 113..802 3100 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..802 17..802 3870 99.5 Plus
scpr-C-RA 910 CG5106-RA 17..802 17..802 3870 99.5 Plus
scpr-B-RA 898 CG17210-RA 13..798 17..802 3750 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226374 131..802 3300 99.4 Plus
3R 32079331 3R 11240141..11240812 802..131 3195 98.4 Minus
3R 32079331 3R 11241384..11242052 134..802 3165 98.2 Plus
3R 32079331 3R 11225536..11225649 17..130 570 100 Plus
3R 32079331 3R 11240866..11240979 130..17 555 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 12:40:38 has no hits.

BO14483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:22 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:45 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5106-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:19 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:05 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:05 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 17..130 100 -> Plus
3R 11225703..11226379 131..808 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:19 Download gff for BO14483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 17..130 100 -> Plus
arm_3R 7051425..7052101 131..808 98   Plus

BO14483.complete Sequence

820 bp assembled on 2006-10-11

GenBank Submission: FJ633147

> BO14483.complete
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCAT

BO14483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 789 CG5106-PB 1..786 17..802 3870 99.5 Plus
scpr-C-RA 789 CG5106-PA 1..786 17..802 3870 99.5 Plus
scpr-B-RA 789 CG17210-PA 1..786 17..802 3750 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-RB 1109 CG5106-RB 17..802 17..802 3870 99.5 Plus
scpr-C-RA 910 CG5106-RA 17..802 17..802 3870 99.5 Plus
scpr-B-RA 898 CG17210-RA 13..798 17..802 3750 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11225703..11226374 131..802 3300 99.4 Plus
3R 32079331 3R 11240141..11240812 802..131 3195 98.4 Minus
3R 32079331 3R 11241384..11242052 134..802 3165 98.2 Plus
3R 32079331 3R 11225536..11225649 17..130 570 100 Plus
3R 32079331 3R 11240866..11240979 130..17 555 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 15:38:00 has no hits.

BO14483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:56 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:30 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:40 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..802 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:56 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..807 17..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:33 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-C-RA 17..802 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:33 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 17..130 100 -> Plus
3R 11225703..11226374 131..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:40 Download gff for BO14483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 17..130 100 -> Plus
arm_3R 7051425..7052096 131..804 99   Plus

BO14483.pep Sequence

Translation from 16 to 820

> BO14483.pep
MAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTMASFLDH

BO14483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-C-PB 262 CG5106-PB 1..262 1..262 1389 100 Plus
scpr-C-PA 262 CG5106-PA 1..262 1..262 1389 100 Plus
scpr-B-PA 262 CG17210-PA 1..262 1..262 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 7..262 1321 95.3 Plus
Ag5r2-PA 254 CG9540-PA 1..250 1..251 409 34.6 Plus