Clone Sequence Records
BO14483.3prime Sequence
818 bp (700 high quality bases) assembled on 2006-05-29
> BO14483.3prime
ATGGTCTAGAAAGCTTGCCATCGTCTGTGTGTTCTCGATGACCTTCTCGT
TGTCGTAGATCTCCTTGGCGTAGCACAGGTTGGGGTAGTCGTAGGCAGCT
CCATAACGGTTCTTGCACCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGAC
AGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAGT
GGTTGTAAAAGTCCCGGGAGAAGCGCACCGCGGCACATCCCACATGGGTG
TTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCTTTGTTGGGAAG
CTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCAG
CAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTCC
GTCTCGGCTCCGCTGTACTGGAACACGGCGTTGTTCTGGCCGGCGTAGGC
GAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTTA
CGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGCC
ATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACATTGTT
GCGCAGCTCGTTGAAGAGATTGAGTATGAGTTTGTGGTGCGGCTCGATCT
TCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTTG
TTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCGC
TGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGAGACTTAATGG
CCATGTCGACTGATAACT
BO14483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5106-PA | 789 | scpr-C-RA | 1..786 | 804..19 | 3830 | 99.4 | Minus |
CG17210-PA | 789 | scpr-B-RA | 1..786 | 804..19 | 3630 | 98.4 | Minus |
CG5207-PA | 795 | scpr-A-RA | 103..792 | 708..19 | 3100 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 804..19 | 3870 | 99.5 | Minus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 804..19 | 3870 | 99.5 | Minus |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 804..19 | 3750 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226374 | 690..19 | 3300 | 99.4 | Minus |
3R | 32079331 | 3R | 11240141..11240812 | 19..690 | 3195 | 98.4 | Plus |
3R | 32079331 | 3R | 11241384..11242052 | 687..19 | 3165 | 98.2 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 804..691 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11240866..11240979 | 691..804 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:02 has no hits.
BO14483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:21 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:44 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:44 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 13..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:22 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 13..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:22 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 691..804 | 100 | -> | Minus |
3R | 11225703..11226381 | 15..690 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:44 Download gff for
BO14483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 691..804 | 100 | -> | Minus |
arm_3R | 7051425..7052103 | 15..690 | 98 | -> | Minus |
BO14483.5prime Sequence
819 bp (793 high quality bases) assembled on 2006-05-29
> BO14483.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCA
BO14483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5106-PA | 789 | scpr-C-RA | 1..786 | 17..802 | 3830 | 99.4 | Plus |
CG17210-PA | 789 | scpr-B-RA | 1..786 | 17..802 | 3630 | 98.4 | Plus |
CG5207-PA | 795 | scpr-A-RA | 103..792 | 113..802 | 3100 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 17..802 | 3870 | 99.5 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 17..802 | 3870 | 99.5 | Plus |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 17..802 | 3750 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226374 | 131..802 | 3300 | 99.4 | Plus |
3R | 32079331 | 3R | 11240141..11240812 | 802..131 | 3195 | 98.4 | Minus |
3R | 32079331 | 3R | 11241384..11242052 | 134..802 | 3165 | 98.2 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:40:38 has no hits.
BO14483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:22 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:45 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5106-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:19 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:05 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:05 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 17..130 | 100 | -> | Plus |
3R | 11225703..11226379 | 131..808 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:19 Download gff for
BO14483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 17..130 | 100 | -> | Plus |
arm_3R | 7051425..7052101 | 131..808 | 98 | | Plus |
BO14483.complete Sequence
820 bp assembled on 2006-10-11
GenBank Submission: FJ633147
> BO14483.complete
GAAGTTATCAGTCGACATGGCCATTAAGTCTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCACCACAAACTCATACTCA
ATCTCTTCAACGAGCTGCGCAACAATGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCGTGTTC
CAGTACAGCGGAGCCGAGACGGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGGTGCAAGAACCGTTATGGAGCTGCCTACGACTACCCCAACCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCAT
BO14483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 789 | CG5106-PB | 1..786 | 17..802 | 3870 | 99.5 | Plus |
scpr-C-RA | 789 | CG5106-PA | 1..786 | 17..802 | 3870 | 99.5 | Plus |
scpr-B-RA | 789 | CG17210-PA | 1..786 | 17..802 | 3750 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 17..802 | 3870 | 99.5 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 17..802 | 3870 | 99.5 | Plus |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 17..802 | 3750 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11225703..11226374 | 131..802 | 3300 | 99.4 | Plus |
3R | 32079331 | 3R | 11240141..11240812 | 802..131 | 3195 | 98.4 | Minus |
3R | 32079331 | 3R | 11241384..11242052 | 134..802 | 3165 | 98.2 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:00 has no hits.
BO14483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:56 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:30 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:40 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..802 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:56 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..807 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:33 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-C-RA | 17..802 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:33 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 17..130 | 100 | -> | Plus |
3R | 11225703..11226374 | 131..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:40 Download gff for
BO14483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 17..130 | 100 | -> | Plus |
arm_3R | 7051425..7052096 | 131..804 | 99 | | Plus |
BO14483.pep Sequence
Translation from 16 to 820
> BO14483.pep
MAIKSLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNAVFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTMASFLDH
BO14483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-C-PB | 262 | CG5106-PB | 1..262 | 1..262 | 1389 | 100 | Plus |
scpr-C-PA | 262 | CG5106-PA | 1..262 | 1..262 | 1389 | 100 | Plus |
scpr-B-PA | 262 | CG17210-PA | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-A-PA | 264 | CG5207-PA | 9..264 | 7..262 | 1321 | 95.3 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 1..250 | 1..251 | 409 | 34.6 | Plus |