Clone BO14484 Report

Search the DGRC for BO14484

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG13039-RA
Protein status:BO14484.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO14484.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-29

> BO14484.5prime
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGGCAAGCTTTCTA
GACC

BO14484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 375 CG13039-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..453 16..388 1865 100 Plus
CG13040-RB 1419 CG13040-RB 76..333 16..273 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326310..16326682 388..16 1865 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:56:33 has no hits.

BO14484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:24 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:48 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:19 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:40 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:40 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16326307..16326682 16..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:19 Download gff for BO14484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319407..16319782 16..392 99   Minus

BO14484.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-29

> BO14484.3prime
ATGGTCTAGAAAGCTTGCCGCCAGGTGCTGGATCAGGTTCTCGTCATCCG
ACCCGGAACTGTAAGACTGAATTTCGAGACGGGGGATTCGGATGGTGGGC
CCCACTCGATAGGTGGTGCTGGAAGATGAATTACCAATCACGTGGTTCTC
TGTATCGTCATCCTGGGTGCTGCTCAAGGAGCTCATGTAGCGAGAGGTTG
AGTTCACGAACTCGAAACCGACTCCCATTCTGGCCACGTTTTTGGCCATA
TACTGTTCGCGCCACGCCTGGTTGGATTCCTCATGGTATTCCAGAGTTGA
TTCATCGGACACATCCTCGTTGGATTGCATCTGATGCAGTATAATGGCGG
GACTGGGCACCCAAATATCGCGACGACTGGTATTCGACATGTCGACTGAT
AACT

BO14484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 375 CG13039-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..453 391..19 1865 100 Minus
CG13040-RB 1419 CG13040-RB 76..333 391..134 1290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326310..16326682 19..391 1865 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:02:36 has no hits.

BO14484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:23 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:46 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-PA 1..375 15..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:59 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 15..391 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:13 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 15..391 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:13 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16326307..16326682 15..391 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:59 Download gff for BO14484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319407..16319782 15..391 99   Plus

BO14484.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ633148

> BO14484.complete
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGGCAAGCTTTCTA
GACCAT

BO14484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 375 CG13039-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-RA 706 CG13039-RA 81..453 16..388 1865 100 Plus
CG13040-RB 1419 CG13040-RB 76..333 16..273 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16326310..16326682 388..16 1865 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:24 has no hits.

BO14484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:00 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 1..375 17..392 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:43 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:55 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 82..453 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:01 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 81..456 16..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:06 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
CG13039-RA 82..453 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:06 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16326308..16326681 17..390 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:55 Download gff for BO14484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319408..16319781 17..390 99   Minus

BO14484.pep Sequence

Translation from 16 to 406

> BO14484.pep
MSNTSRRDIWVPSPAIILHQMQSNEDVSDESTLEYHEESNQAWREQYMAK
NVARMGVGFEFVNSTSRYMSSLSSTQDDDTENHVIGNSSSSTTYRVGPTI
RIPRLEIQSYSSGSDDENLIQHLAASFLDH

BO14484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13039-PA 124 CG13039-PA 1..124 1..124 638 100 Plus