Clone Sequence Records
BO14484.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-29
> BO14484.5prime
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGGCAAGCTTTCTA
GACC
BO14484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-PA | 375 | CG13039-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-RA | 706 | CG13039-RA | 81..453 | 16..388 | 1865 | 100 | Plus |
CG13040-RB | 1419 | CG13040-RB | 76..333 | 16..273 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16326310..16326682 | 388..16 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:56:33 has no hits.
BO14484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:24 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:48 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:19 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 16..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:40 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 16..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:40 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16326307..16326682 | 16..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:19 Download gff for
BO14484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16319407..16319782 | 16..392 | 99 | | Minus |
BO14484.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-29
> BO14484.3prime
ATGGTCTAGAAAGCTTGCCGCCAGGTGCTGGATCAGGTTCTCGTCATCCG
ACCCGGAACTGTAAGACTGAATTTCGAGACGGGGGATTCGGATGGTGGGC
CCCACTCGATAGGTGGTGCTGGAAGATGAATTACCAATCACGTGGTTCTC
TGTATCGTCATCCTGGGTGCTGCTCAAGGAGCTCATGTAGCGAGAGGTTG
AGTTCACGAACTCGAAACCGACTCCCATTCTGGCCACGTTTTTGGCCATA
TACTGTTCGCGCCACGCCTGGTTGGATTCCTCATGGTATTCCAGAGTTGA
TTCATCGGACACATCCTCGTTGGATTGCATCTGATGCAGTATAATGGCGG
GACTGGGCACCCAAATATCGCGACGACTGGTATTCGACATGTCGACTGAT
AACT
BO14484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-PA | 375 | CG13039-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-RA | 706 | CG13039-RA | 81..453 | 391..19 | 1865 | 100 | Minus |
CG13040-RB | 1419 | CG13040-RB | 76..333 | 391..134 | 1290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16326310..16326682 | 19..391 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:36 has no hits.
BO14484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:23 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:46 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:59 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 15..391 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:13 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 15..391 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:13 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16326307..16326682 | 15..391 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:59 Download gff for
BO14484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16319407..16319782 | 15..391 | 99 | | Plus |
BO14484.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ633148
> BO14484.complete
GAAGTTATCAGTCGACATGTCGAATACCAGTCGTCGCGATATTTGGGTGC
CCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACGAGGATGTGTCC
GATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGGCGTGGCGCGA
ACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGTTTCGAGTTCG
TGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCACCCAGGATGAC
GATACAGAGAACCACGTGATTGGTAATTCATCTTCCAGCACCACCTATCG
AGTGGGGCCCACCATCCGAATCCCCCGTCTCGAAATTCAGTCTTACAGTT
CCGGGTCGGATGACGAGAACCTGATCCAGCACCTGGCGGCAAGCTTTCTA
GACCAT
BO14484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-RA | 375 | CG13039-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-RA | 706 | CG13039-RA | 81..453 | 16..388 | 1865 | 100 | Plus |
CG13040-RB | 1419 | CG13040-RB | 76..333 | 16..273 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16326310..16326682 | 388..16 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:24 has no hits.
BO14484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:00 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:43 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 16..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:55 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 82..453 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:01 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 81..456 | 16..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:06 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13039-RA | 82..453 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:06 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16326308..16326681 | 17..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:55 Download gff for
BO14484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16319408..16319781 | 17..390 | 99 | | Minus |
BO14484.pep Sequence
Translation from 16 to 406
> BO14484.pep
MSNTSRRDIWVPSPAIILHQMQSNEDVSDESTLEYHEESNQAWREQYMAK
NVARMGVGFEFVNSTSRYMSSLSSTQDDDTENHVIGNSSSSTTYRVGPTI
RIPRLEIQSYSSGSDDENLIQHLAASFLDH
BO14484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13039-PA | 124 | CG13039-PA | 1..124 | 1..124 | 638 | 100 | Plus |