Clone Sequence Records
BO14485.3prime Sequence
869 bp (723 high quality bases) assembled on 2006-05-29
> BO14485.3prime
ATGGTCTAGAAAGCTTGCACGTGCGGTCTGCGAAAATGGATTGGGTCTGG
CGCGGAACGTGGTTCGTTGGCGCAGCTTTTGGTAGGCCTCCCGTTCCGCC
CGTTGGCGCTGATCCTCCAGCTCGCGGCGCCGCGCCTCCTGCGCCTTGGA
CGTCTGGATGTTGAAAATGCGCCGCTGCTGGACGCGCGATTCGGCGGACA
AGTTGAAGGGCTCGACCTTCACCCTTGCCGCTGGAACTGCGGAGGAAGGT
CGGTTCGAGGACTTCAAGGGCTGACGGCTGCTCTGCGGAATCGGTTTGGC
CCTAGGAGCCTGCATTTTGTGAAGTTGGGACTCCAGCTCGCGCTCCCTCT
GCAGCTGCTCCACCCGCAAGCGGCGCTTTTCCTCCATTTCACGCGAATTC
TTGAGCACATTGGGGGTCGTGGGGCAGGTGATCCGATGCACAACGACCCT
GGAGGACTGACGTGAGTGCGCCTGACGAAAGTCGGGCATCGGTCGGCTGT
GGAACTCGCGCTGCTTGCGCTCCTGCTCCCTGCATTCGCGGATCAGCTGA
TCCTTGCGACTGGAATAGATGTCCTTGAAGCGATAGGCCTTTGGAGCCGA
CACCTGCGGTGGAAATGTGGGCTTCTCGCACGAGATCTTCATATTCTTGA
ACAGATTGGAGACCAAAACCTGAGAATGCTGCTGGGCCTGGCTGACAATC
TGCCTGCCGCGTCGCTGCAGCTGCTCCACCTGCTCACGATGCTGTTGGAA
TCTGGGAAACTCCTCACTTATTGCGGATGCAAAGCTCTCCCATCGACTCC
ACACCCAAATCGCCCCAGTTGTACTCCGCTTTTCGATTCAGACATTATTA
TCATGTCCACTGATAACTT
BO14485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-PA | 837 | CG15395-RA | 63..834 | 790..19 | 3835 | 99.8 | Minus |
CG15395-PA | 837 | CG15395-RA | 22..64 | 832..790 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 1234 | CG15395-RB | 165..998 | 854..19 | 4100 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2610476..2611047 | 590..19 | 2860 | 100 | Minus |
2L | 23513712 | 2L | 2610158..2610422 | 854..588 | 1205 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:52:34 has no hits.
BO14485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:25 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-PA | 1..837 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:49 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-PA | 1..837 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:24 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 159..1004 | 12..863 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:48 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 159..1004 | 12..863 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:48 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2610152..2610421 | 589..863 | 97 | -> | Minus |
2L | 2610478..2611053 | 12..588 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:24 Download gff for
BO14485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2610152..2610421 | 589..863 | 97 | -> | Minus |
arm_2L | 2610478..2611053 | 12..588 | 99 | | Minus |
BO14485.5prime Sequence
866 bp (729 high quality bases) assembled on 2006-05-29
> BO14485.5prime
GAAGTTATCAGTCGACATGATAATAATGTCTGATTCGAAAGCGGAGTACA
ACTGGGGCGATTTGGGTGTGGAGTCGATGGAGAGCTTTGCATCCGCAATA
AGTGAGGAGTTTCCCAGACTCCAACAGCATCGTGAGCAGGTGGAGCAGCT
GCAGCGACGCGGCAGGCAGATTGTCAGCCAGGCCCAGCAGCATTCTCAGG
TTTTGGTCTCCAATCTGTTCAAGAATATGAAGATCTCGTGCGAGAAGCCC
ACATTTCCACCGCAGGTGTCGGCTCCAAAGGCCTATCGCTTCAAGGACAT
CTATTCCAGTCGCAAGGATCAGCTGATCCGCGAATGCAGGGAGCAGGAGC
GCAAGCAGCGCGAGTTCCACAGCCGACCGATGCCCGACTTTCGTCAGGCG
CACTCACGTCAGTCCTCCAGGGTCGTTGTGCATCGGATCACCTGCCCCAC
GACCCCCAATGTGCTCAAGAATTCGCGTGAAATGGAGGAAAAGCGCCGCT
TGCGGGTGGAGCAGCTGCAGAGGGAGCGCGAGCTGGAGTCCCAACTTCAC
AAAATGCAGGCTCCTAGGGCCAAACCGATTCCGCAGAGCAGCCGTCAGCC
CTTGAAGTCCTCGAACCGACCTTCCTCCGCAGTTCCAGCGGCAAGGGTGA
AGGTCGAGCCCTTCAACTTGTCCGCCGAATCGCGCGTCCAGCAGCGGCGC
ATTTTCAACATCCAGACGTCCAAGGCGCAGGAGGCGCGGCGCCGCGAGCT
GGAGGATCAGCGCCAACGGGCGGAACGGGAGGCCTACCAAAAGCTGCGCC
AACGAACCACGTTCCGCGCCAGACCCAATCCATTTTCGCAGACCGCACGT
GCAAGCTTTCTAGACC
BO14485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-PA | 837 | CG15395-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 1234 | CG15395-RB | 165..998 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2610476..2611047 | 279..850 | 2860 | 100 | Plus |
2L | 23513712 | 2L | 2610158..2610422 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:06:10 has no hits.
BO14485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:26 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:50 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:15 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 154..1004 | 7..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:18 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 154..1004 | 7..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:18 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2610147..2610421 | 7..280 | 98 | -> | Plus |
2L | 2610478..2611053 | 281..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:15 Download gff for
BO14485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2610147..2610421 | 7..280 | 98 | -> | Plus |
arm_2L | 2610478..2611053 | 281..857 | 99 | | Plus |
BO14485.complete Sequence
868 bp assembled on 2006-10-11
GenBank Submission: FJ633149
> BO14485.complete
GAAGTTATCAGTCGACATGATAATAATGTCTGATTCGAAAGCGGAGTACA
ACTGGGGCGATTTGGGTGTGGAGTCGATGGAGAGCTTTGCATCCGCAATA
AGTGAGGAGTTTCCCAGACTCCAACAGCATCGTGAGCAGGTGGAGCAGCT
GCAGCGACGCGGCAGGCAGATTGTCAGCCAGGCCCAGCAGCATTCTCAGG
TTTTGGTCTCCAATCTGTTCAAGAATATGAAGATCTCGTGCGAGAAGCCC
ACATTTCCACCGCAGGTGTCGGCTCCAAAGGCCTATCGCTTCAAGGACAT
CTATTCCAGTCGCAAGGATCAGCTGATCCGCGAATGCAGGGAGCAGGAGC
GCAAGCAGCGCGAGTTCCACAGCCGACCGATGCCCGACTTTCGTCAGGCG
CACTCACGTCAGTCCTCCAGGGTCGTTGTGCATCGGATCACCTGCCCCAC
GACCCCCAATGTGCTCAAGAATTCGCGTGAAATGGAGGAAAAGCGCCGCT
TGCGGGTGGAGCAGCTGCAGAGGGAGCGCGAGCTGGAGTCCCAACTTCAC
AAAATGCAGGCTCCTAGGGCCAAACCGATTCCGCAGAGCAGCCGTCAGCC
CTTGAAGTCCTCGAACCGACCTTCCTCCGCAGTTCCAGCGGCAAGGGTGA
AGGTCGAGCCCTTCAACTTGTCCGCCGAATCGCGCGTCCAGCAGCGGCGC
ATTTTCAACATCCAGACGTCCAAGGCGCAGGAGGCGCGGCGCCGCGAGCT
GGAGGATCAGCGCCAACGGGCGGAACGGGAGGCCTACCAAAAGCTGCGCC
AACGAACCACGTTCCGCGCCAGACCCAATCCATTTTCGCAGACCGCACGT
GCAAGCTTTCTAGACCAT
BO14485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 828 | CG15395-PB | 1..825 | 26..850 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-RB | 1234 | CG15395-RB | 165..998 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2610476..2611047 | 279..850 | 2860 | 100 | Plus |
2L | 23513712 | 2L | 2610158..2610422 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:43 has no hits.
BO14485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:58 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 1..828 | 26..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:32 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 1..852 | 7..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:15 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 165..998 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:58 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 1..852 | 7..857 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:21 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15395-RB | 165..998 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:21 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2610158..2610421 | 17..280 | 100 | -> | Plus |
2L | 2610478..2611047 | 281..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:15 Download gff for
BO14485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2610158..2610421 | 17..280 | 100 | -> | Plus |
arm_2L | 2610478..2611047 | 281..852 | 99 | | Plus |
BO14485.pep Sequence
Translation from 16 to 868
> BO14485.pep
MIIMSDSKAEYNWGDLGVESMESFASAISEEFPRLQQHREQVEQLQRRGR
QIVSQAQQHSQVLVSNLFKNMKISCEKPTFPPQVSAPKAYRFKDIYSSRK
DQLIRECREQERKQREFHSRPMPDFRQAHSRQSSRVVVHRITCPTTPNVL
KNSREMEEKRRLRVEQLQRERELESQLHKMQAPRAKPIPQSSRQPLKSSN
RPSSAVPAARVKVEPFNLSAESRVQQRRIFNIQTSKAQEARRRELEDQRQ
RAEREAYQKLRQRTTFRARPNPFSQTARASFLDH
BO14485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15395-PB | 275 | CG15395-PB | 1..275 | 4..278 | 1397 | 100 | Plus |
mei-38-PA | 325 | CG14781-PA | 193..319 | 85..246 | 240 | 33.3 | Plus |
mei-38-PB | 326 | CG14781-PB | 194..320 | 85..246 | 240 | 33.3 | Plus |
CG5781-PA | 266 | CG5781-PA | 74..255 | 87..276 | 175 | 26.9 | Plus |