Clone Sequence Records
BO14487.3prime Sequence
800 bp (749 high quality bases) assembled on 2006-05-29
> BO14487.3prime
ATGGTCTAGAAAGCTTGCGATGCGCCGCGAAAAGTTTCCGCCGCCATTGT
TTCCCATTCCGCCGCCACCGTTACCACCGCCGTGTTCCCCACCATTGAGT
CCACGCGTCTTTCCGTCGTAGAACAGCTCAATGTATCGCGAACCCATCTG
CTCTCTGTGGCGCTTCATGGCCACCTGGGAATCCTCGTAGGTGTCGAAGT
AGGCATCCGCAGTGCCACTGTGCAGACCCTTCTTGTTGTAGTTTATCCGC
ACGTTAGCTGGTCGGATTGGTTCGAAGAACTTAAAAACGTCGTTTTCAAA
TGAAGTGTAGGGAAGTCCGCGCATGTGGATTGTATAATACTCGATGTCGT
TGCCCCGACCGCCGCCGATGGGACCGAAATTGCCACCACCGCCCATTGAG
TTGCCGCCGCCGAAGTTCGAGCCATTGTTGAATCCGCCGCCACCGCCGTT
GTTGCCTCCTCCGAAGTTCGAGCCGACATTGTTGTTTCCTCCAAAGTTAC
CGAATCCAGAGTTTCCGAAATTTCCGTTGTTATTGTTGCGACCGCCGCCG
ATCGGGCCAAAGTTGCCAACACCACTCGAGGATACGAAGTTCCCGCCGTT
ATTGAAACCTCCTCCACCATTGCCGCCAAAATTGGAGCCGCCATTGTTGC
CGAAATTATTAACGCCTCCTGGAGAATTGAAGTTGTTGCCACTGTTGAAA
CCACCGCCGCCGTTGTTGTTGCCGCCGAAGTTTCCGCCTCCATTATTGCC
GAAGTTTCCAAAGTTTCCGCTGTTACCACTGTCGTTTCCAAAGTTGCCGG
BO14487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6946-PB | 1761 | CG6946-RB | 977..1758 | 800..19 | 3860 | 99.7 | Minus |
CG6946-PA | 1761 | CG6946-RA | 977..1758 | 800..19 | 3860 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-RA | 2117 | CG6946-RA | 1124..1912 | 800..12 | 3885 | 99.5 | Minus |
glo-RC | 2059 | CG6946-RC | 979..1767 | 800..12 | 3885 | 99.5 | Minus |
glo-RB | 2129 | CG6946-RB | 1049..1837 | 800..12 | 3885 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11815841..11816361 | 280..800 | 2575 | 99.6 | Plus |
3R | 32079331 | 3R | 11815498..11815767 | 12..281 | 1320 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:28:27 has no hits.
BO14487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:27 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6946-PB | 977..1761 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:51 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6946-PA | 977..1761 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:22 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 1049..1841 | 9..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:56 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 1049..1841 | 9..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:56 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11815494..11815765 | 9..279 | 98 | <- | Plus |
3R | 11815841..11816361 | 280..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:22 Download gff for
BO14487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7641216..7641487 | 9..279 | 98 | <- | Plus |
arm_3R | 7641563..7642083 | 280..800 | 99 | | Plus |
BO14487.5prime Sequence
909 bp (783 high quality bases) assembled on 2006-05-29
> BO14487.5prime
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTA
TGACATACGTGATCGTGGTGCCAACCGTGGTGGCAATGAATTCGGCGGAG
GGCGCAATGATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAAC
ATGCTGGGCTCCACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGGA
AACACCAAA
BO14487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6946-PB | 1761 | CG6946-RB | 1..844 | 17..860 | 4120 | 99.5 | Plus |
CG6946-PA | 1761 | CG6946-RA | 1..844 | 17..860 | 4120 | 99.5 | Plus |
CG6946-PC | 540 | CG6946-RC | 1..503 | 17..519 | 2440 | 99.4 | Plus |
CG6946-PB | 1761 | CG6946-RB | 848..889 | 863..904 | 210 | 100 | Plus |
CG6946-PA | 1761 | CG6946-RA | 848..889 | 863..904 | 210 | 100 | Plus |
CG6946-PC | 540 | CG6946-RC | 502..540 | 663..701 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-RA | 2117 | CG6946-RA | 148..1036 | 17..904 | 4345 | 99.3 | Plus |
glo-RB | 2129 | CG6946-RB | 73..961 | 17..904 | 4345 | 99.3 | Plus |
glo-RC | 2059 | CG6946-RC | 148..650 | 17..519 | 2470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11818569..11818942 | 390..17 | 1810 | 98.9 | Minus |
3R | 32079331 | 3R | 11817192..11817339 | 665..518 | 740 | 100 | Minus |
3R | 32079331 | 3R | 11816612..11816759 | 809..662 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 11818005..11818139 | 519..385 | 675 | 100 | Minus |
3R | 32079331 | 3R | 11816449..11816549 | 904..805 | 425 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:55:47 has no hits.
BO14487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:28 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6946-PB | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:52 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6946-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:36 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..963 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:15 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..963 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:15 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11816612..11816757 | 664..809 | 99 | <- | Minus |
3R | 11817194..11817338 | 519..663 | 100 | <- | Minus |
3R | 11818006..11818137 | 387..518 | 100 | <- | Minus |
3R | 11816446..11816544 | 810..906 | 96 | <- | Minus |
3R | 11818573..11818942 | 17..386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:36 Download gff for
BO14487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7642168..7642266 | 810..906 | 96 | <- | Minus |
arm_3R | 7642334..7642479 | 664..809 | 99 | <- | Minus |
arm_3R | 7642916..7643060 | 519..663 | 100 | <- | Minus |
arm_3R | 7643728..7643859 | 387..518 | 100 | <- | Minus |
arm_3R | 7644295..7644664 | 17..386 | 99 | | Minus |
BO14487.complete Sequence
1792 bp assembled on 2008-11-10
GenBank Submission: KX796941
> BO14487.complete
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTA
TGACATACGTGATCGTGGTGCCAACCGTGGTGGCAATGATTTCGGCGGAG
GGCGCAATGATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAAC
ATGCTGGGCTTCAACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGG
AAACAACCAAGGTGGAAATAATGGAAATTTTGGAAATAACTCTGGACCCA
GCAATTTCGGCAACTTTGGTGGCGGCAACAACGGTGGAAATTCCGGCAAC
TTTGGAAACGACAGTGGTAACAGCGGAAACTTTGGAAACTTCGGCAATAA
TGGAGGCGGAAACTTCGGCGGCAACAACAACGGCGGCGGTGGTTTCAACA
GTGGCAACAACTTCAATTCTCCAGGAGGCGTTAATAATTTCGGCAACAAT
GGCGGCTCCAATTTTGGCGGCAATGGTGGAGGAGGTTTCAATAACGGCGG
AAACTTCGTATCCTCGAGTGGTGTTGGCAACTTTGGCCCGATCGGCGGCG
GTCGCAACAATAACAACGGAAATTTCGGAAACTCTGGATTCGGTAACTTT
GGAGGAAACAACAATGTCGGCTCGAACTTCGGAGGAGGCAACAACGGCGG
TGGCGGCGGATTCAACAATGGCTCGAACTTCGGCGGCGGCAACTCAATGG
GCGGTGGTGGCAATTTCGGTCCCATCGGCGGCGGTCGGGGCAACGACATC
GAGTATTATACAATCCACATGCGCGGACTTCCCTACACTTCATTTGAAAA
CGACGTTTTTAAGTTCTTCGAACCAATCCGACCAGCTAACGTGCGGATAA
ACTACAACAAGAAGGGTCTGCACAGTGGCACTGCGGATGCCTACTTCGAC
ACCTACGAGGATTCCCAGGTGGCCATGAAGCGCCACAGAGAGCAGATGGG
TTCGCGATACATTGAGCTGTTCTACGACGGAAAGACGCGTGGACTCAATG
GTGGGGAACACGGCGGTGGTAACGGTGGCGGCGGAATGGGAAACAATGGC
GGCGGAAACTTTTCGCGGCGCATCGCAAGCTTTCTAGACCAT
BO14487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-RA | 1761 | CG6946-PA | 1..1758 | 17..1774 | 8730 | 99.8 | Plus |
glo-RB | 1761 | CG6946-PB | 1..1758 | 17..1774 | 8730 | 99.8 | Plus |
glo-RC | 540 | CG6946-PC | 1..503 | 17..519 | 2470 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-RA | 2117 | CG6946-RA | 148..1912 | 17..1781 | 8735 | 99.7 | Plus |
glo-RB | 2129 | CG6946-RB | 73..1837 | 17..1781 | 8735 | 99.7 | Plus |
glo-RC | 2059 | CG6946-RC | 649..1767 | 663..1781 | 5550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11815841..11816549 | 1513..805 | 3515 | 99.7 | Minus |
3R | 32079331 | 3R | 11818569..11818942 | 390..17 | 1810 | 98.9 | Minus |
3R | 32079331 | 3R | 11815498..11815767 | 1781..1512 | 1320 | 99.3 | Minus |
3R | 32079331 | 3R | 11816612..11816759 | 809..662 | 740 | 100 | Minus |
3R | 32079331 | 3R | 11817192..11817339 | 665..518 | 740 | 100 | Minus |
3R | 32079331 | 3R | 11818005..11818139 | 519..385 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:23 has no hits.
BO14487.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:19 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RA | 229..1997 | 17..1784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..1830 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:19 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RA | 229..1986 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:18 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..1830 | 17..1776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:18 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11815503..11815765 | 1514..1776 | 99 | <- | Minus |
3R | 11815841..11816544 | 810..1513 | 99 | <- | Minus |
3R | 11816612..11816757 | 664..809 | 100 | <- | Minus |
3R | 11817194..11817338 | 519..663 | 100 | <- | Minus |
3R | 11818006..11818137 | 387..518 | 100 | <- | Minus |
3R | 11818573..11818942 | 17..386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:43 Download gff for
BO14487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7641225..7641487 | 1514..1776 | 99 | <- | Minus |
arm_3R | 7641563..7642266 | 810..1513 | 99 | <- | Minus |
arm_3R | 7642334..7642479 | 664..809 | 100 | <- | Minus |
arm_3R | 7642916..7643060 | 519..663 | 100 | <- | Minus |
arm_3R | 7643728..7643859 | 387..518 | 100 | <- | Minus |
arm_3R | 7644295..7644664 | 17..386 | 99 | | Minus |
BO14487.pep Sequence
Translation from 16 to 1792
> BO14487.pep
MSNADVQFNYGQQGNGDNFNDDSNQQQDEDDQYNEDGGGKIENVGESPKF
VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEV
ASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKL
RGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQD
DTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAGGGVGGRPGPYDIRDR
GANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGG
NNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNF
GGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSS
SGVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFN
NGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFENDVFKF
FEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIE
LFYDGKTRGLNGGEHGGGNGGGGMGNNGGGNFSRRIASFLDH
BO14487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-PA | 586 | CG6946-PA | 1..586 | 1..586 | 3201 | 100 | Plus |
glo-PB | 586 | CG6946-PB | 1..586 | 1..586 | 3201 | 100 | Plus |
glo-PC | 179 | CG6946-PC | 1..169 | 1..169 | 877 | 99.4 | Plus |
Hrb98DE-PA | 364 | CG9983-PA | 2..361 | 14..459 | 342 | 28.2 | Plus |
Hrb98DE-PE | 360 | CG9983-PE | 2..357 | 14..459 | 338 | 28.1 | Plus |
Hrb98DE-PA | 364 | CG9983-PA | 206..350 | 318..472 | 287 | 46.7 | Plus |
Hrb98DE-PA | 364 | CG9983-PA | 201..317 | 353..489 | 198 | 41.4 | Plus |
glo-PC | 179 | CG6946-PC | 51..143 | 148..239 | 172 | 39.8 | Plus |