Clone BO14487 Report

Search the DGRC for BO14487

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptglo-RA
Protein status:BO14487.pep: Imported from assembly
Sequenced Size:1792

Clone Sequence Records

BO14487.3prime Sequence

800 bp (749 high quality bases) assembled on 2006-05-29

> BO14487.3prime
ATGGTCTAGAAAGCTTGCGATGCGCCGCGAAAAGTTTCCGCCGCCATTGT
TTCCCATTCCGCCGCCACCGTTACCACCGCCGTGTTCCCCACCATTGAGT
CCACGCGTCTTTCCGTCGTAGAACAGCTCAATGTATCGCGAACCCATCTG
CTCTCTGTGGCGCTTCATGGCCACCTGGGAATCCTCGTAGGTGTCGAAGT
AGGCATCCGCAGTGCCACTGTGCAGACCCTTCTTGTTGTAGTTTATCCGC
ACGTTAGCTGGTCGGATTGGTTCGAAGAACTTAAAAACGTCGTTTTCAAA
TGAAGTGTAGGGAAGTCCGCGCATGTGGATTGTATAATACTCGATGTCGT
TGCCCCGACCGCCGCCGATGGGACCGAAATTGCCACCACCGCCCATTGAG
TTGCCGCCGCCGAAGTTCGAGCCATTGTTGAATCCGCCGCCACCGCCGTT
GTTGCCTCCTCCGAAGTTCGAGCCGACATTGTTGTTTCCTCCAAAGTTAC
CGAATCCAGAGTTTCCGAAATTTCCGTTGTTATTGTTGCGACCGCCGCCG
ATCGGGCCAAAGTTGCCAACACCACTCGAGGATACGAAGTTCCCGCCGTT
ATTGAAACCTCCTCCACCATTGCCGCCAAAATTGGAGCCGCCATTGTTGC
CGAAATTATTAACGCCTCCTGGAGAATTGAAGTTGTTGCCACTGTTGAAA
CCACCGCCGCCGTTGTTGTTGCCGCCGAAGTTTCCGCCTCCATTATTGCC
GAAGTTTCCAAAGTTTCCGCTGTTACCACTGTCGTTTCCAAAGTTGCCGG

BO14487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6946-PB 1761 CG6946-RB 977..1758 800..19 3860 99.7 Minus
CG6946-PA 1761 CG6946-RA 977..1758 800..19 3860 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
glo-RA 2117 CG6946-RA 1124..1912 800..12 3885 99.5 Minus
glo-RC 2059 CG6946-RC 979..1767 800..12 3885 99.5 Minus
glo-RB 2129 CG6946-RB 1049..1837 800..12 3885 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11815841..11816361 280..800 2575 99.6 Plus
3R 32079331 3R 11815498..11815767 12..281 1320 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 18:28:27 has no hits.

BO14487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:27 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6946-PB 977..1761 15..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:51 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6946-PA 977..1761 15..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:22 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
glo-RB 1049..1841 9..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:56 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
glo-RB 1049..1841 9..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:56 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11815494..11815765 9..279 98 <- Plus
3R 11815841..11816361 280..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:22 Download gff for BO14487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7641216..7641487 9..279 98 <- Plus
arm_3R 7641563..7642083 280..800 99   Plus

BO14487.5prime Sequence

909 bp (783 high quality bases) assembled on 2006-05-29

> BO14487.5prime
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTA
TGACATACGTGATCGTGGTGCCAACCGTGGTGGCAATGAATTCGGCGGAG
GGCGCAATGATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAAC
ATGCTGGGCTCCACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGGA
AACACCAAA

BO14487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6946-PB 1761 CG6946-RB 1..844 17..860 4120 99.5 Plus
CG6946-PA 1761 CG6946-RA 1..844 17..860 4120 99.5 Plus
CG6946-PC 540 CG6946-RC 1..503 17..519 2440 99.4 Plus
CG6946-PB 1761 CG6946-RB 848..889 863..904 210 100 Plus
CG6946-PA 1761 CG6946-RA 848..889 863..904 210 100 Plus
CG6946-PC 540 CG6946-RC 502..540 663..701 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
glo-RA 2117 CG6946-RA 148..1036 17..904 4345 99.3 Plus
glo-RB 2129 CG6946-RB 73..961 17..904 4345 99.3 Plus
glo-RC 2059 CG6946-RC 148..650 17..519 2470 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11818569..11818942 390..17 1810 98.9 Minus
3R 32079331 3R 11817192..11817339 665..518 740 100 Minus
3R 32079331 3R 11816612..11816759 809..662 725 99.3 Minus
3R 32079331 3R 11818005..11818139 519..385 675 100 Minus
3R 32079331 3R 11816449..11816549 904..805 425 97 Minus
Blast to na_te.dros performed on 2015-02-12 00:55:47 has no hits.

BO14487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:28 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6946-PB 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:52 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6946-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:36 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
glo-RB 73..963 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:15 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
glo-RB 73..963 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:15 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11816612..11816757 664..809 99 <- Minus
3R 11817194..11817338 519..663 100 <- Minus
3R 11818006..11818137 387..518 100 <- Minus
3R 11816446..11816544 810..906 96 <- Minus
3R 11818573..11818942 17..386 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:36 Download gff for BO14487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7642168..7642266 810..906 96 <- Minus
arm_3R 7642334..7642479 664..809 99 <- Minus
arm_3R 7642916..7643060 519..663 100 <- Minus
arm_3R 7643728..7643859 387..518 100 <- Minus
arm_3R 7644295..7644664 17..386 99   Minus

BO14487.complete Sequence

1792 bp assembled on 2008-11-10

GenBank Submission: KX796941

> BO14487.complete
GAAGTTATCAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCC
AGCAGGGAAATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGAT
GAGGATGACCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGG
CGAGAGCCCCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGC
ACAAGGAGATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCG
GCGGGCATTCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGA
GGCGTACGTGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGC
TGAACAAGGCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACG
CCCAAGGAGGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGC
CTTCGTTGTGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAA
TCGAGGAGTTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATA
CTTTTTGTTATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCA
GTTCGAAAGCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAA
AAATTGGGCACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATG
AAGAGGGCCACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGGCCCTTA
TGACATACGTGATCGTGGTGCCAACCGTGGTGGCAATGATTTCGGCGGAG
GGCGCAATGATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAAC
ATGCTGGGCTTCAACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGG
AAACAACCAAGGTGGAAATAATGGAAATTTTGGAAATAACTCTGGACCCA
GCAATTTCGGCAACTTTGGTGGCGGCAACAACGGTGGAAATTCCGGCAAC
TTTGGAAACGACAGTGGTAACAGCGGAAACTTTGGAAACTTCGGCAATAA
TGGAGGCGGAAACTTCGGCGGCAACAACAACGGCGGCGGTGGTTTCAACA
GTGGCAACAACTTCAATTCTCCAGGAGGCGTTAATAATTTCGGCAACAAT
GGCGGCTCCAATTTTGGCGGCAATGGTGGAGGAGGTTTCAATAACGGCGG
AAACTTCGTATCCTCGAGTGGTGTTGGCAACTTTGGCCCGATCGGCGGCG
GTCGCAACAATAACAACGGAAATTTCGGAAACTCTGGATTCGGTAACTTT
GGAGGAAACAACAATGTCGGCTCGAACTTCGGAGGAGGCAACAACGGCGG
TGGCGGCGGATTCAACAATGGCTCGAACTTCGGCGGCGGCAACTCAATGG
GCGGTGGTGGCAATTTCGGTCCCATCGGCGGCGGTCGGGGCAACGACATC
GAGTATTATACAATCCACATGCGCGGACTTCCCTACACTTCATTTGAAAA
CGACGTTTTTAAGTTCTTCGAACCAATCCGACCAGCTAACGTGCGGATAA
ACTACAACAAGAAGGGTCTGCACAGTGGCACTGCGGATGCCTACTTCGAC
ACCTACGAGGATTCCCAGGTGGCCATGAAGCGCCACAGAGAGCAGATGGG
TTCGCGATACATTGAGCTGTTCTACGACGGAAAGACGCGTGGACTCAATG
GTGGGGAACACGGCGGTGGTAACGGTGGCGGCGGAATGGGAAACAATGGC
GGCGGAAACTTTTCGCGGCGCATCGCAAGCTTTCTAGACCAT

BO14487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
glo-RA 1761 CG6946-PA 1..1758 17..1774 8730 99.8 Plus
glo-RB 1761 CG6946-PB 1..1758 17..1774 8730 99.8 Plus
glo-RC 540 CG6946-PC 1..503 17..519 2470 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
glo-RA 2117 CG6946-RA 148..1912 17..1781 8735 99.7 Plus
glo-RB 2129 CG6946-RB 73..1837 17..1781 8735 99.7 Plus
glo-RC 2059 CG6946-RC 649..1767 663..1781 5550 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11815841..11816549 1513..805 3515 99.7 Minus
3R 32079331 3R 11818569..11818942 390..17 1810 98.9 Minus
3R 32079331 3R 11815498..11815767 1781..1512 1320 99.3 Minus
3R 32079331 3R 11816612..11816759 809..662 740 100 Minus
3R 32079331 3R 11817192..11817339 665..518 740 100 Minus
3R 32079331 3R 11818005..11818139 519..385 675 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:23 has no hits.

BO14487.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:19 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
glo-RA 229..1997 17..1784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
glo-RB 73..1830 17..1776 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:19 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
glo-RA 229..1986 17..1776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:18 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
glo-RB 73..1830 17..1776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:18 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11815503..11815765 1514..1776 99 <- Minus
3R 11815841..11816544 810..1513 99 <- Minus
3R 11816612..11816757 664..809 100 <- Minus
3R 11817194..11817338 519..663 100 <- Minus
3R 11818006..11818137 387..518 100 <- Minus
3R 11818573..11818942 17..386 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:43 Download gff for BO14487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7641225..7641487 1514..1776 99 <- Minus
arm_3R 7641563..7642266 810..1513 99 <- Minus
arm_3R 7642334..7642479 664..809 100 <- Minus
arm_3R 7642916..7643060 519..663 100 <- Minus
arm_3R 7643728..7643859 387..518 100 <- Minus
arm_3R 7644295..7644664 17..386 99   Minus

BO14487.pep Sequence

Translation from 16 to 1792

> BO14487.pep
MSNADVQFNYGQQGNGDNFNDDSNQQQDEDDQYNEDGGGKIENVGESPKF
VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEV
ASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKL
RGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQD
DTEQALGRNREKIGHRYIEIFRSSIAEMKRATGAGGGVGGRPGPYDIRDR
GANRGGNDFGGGRNDWGNNGNFGVGANNMLGFNNLPSLMNSGNFGNNQGG
NNGNFGNNSGPSNFGNFGGGNNGGNSGNFGNDSGNSGNFGNFGNNGGGNF
GGNNNGGGGFNSGNNFNSPGGVNNFGNNGGSNFGGNGGGGFNNGGNFVSS
SGVGNFGPIGGGRNNNNGNFGNSGFGNFGGNNNVGSNFGGGNNGGGGGFN
NGSNFGGGNSMGGGGNFGPIGGGRGNDIEYYTIHMRGLPYTSFENDVFKF
FEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKRHREQMGSRYIE
LFYDGKTRGLNGGEHGGGNGGGGMGNNGGGNFSRRIASFLDH

BO14487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
glo-PA 586 CG6946-PA 1..586 1..586 3201 100 Plus
glo-PB 586 CG6946-PB 1..586 1..586 3201 100 Plus
glo-PC 179 CG6946-PC 1..169 1..169 877 99.4 Plus
Hrb98DE-PA 364 CG9983-PA 2..361 14..459 342 28.2 Plus
Hrb98DE-PE 360 CG9983-PE 2..357 14..459 338 28.1 Plus
Hrb98DE-PA 364 CG9983-PA 206..350 318..472 287 46.7 Plus
Hrb98DE-PA 364 CG9983-PA 201..317 353..489 198 41.4 Plus
glo-PC 179 CG6946-PC 51..143 148..239 172 39.8 Plus