Clone Sequence Records
BO14489.3prime Sequence
805 bp (727 high quality bases) assembled on 2006-05-29
> BO14489.3prime
ATGGTCTAGAAAGCTTGCCATTTCATCCCGCTTGGCCAGCTCCTCCACAA
GCTTGGCACTTTGGGCCTTGATTTGTTTGCGGTTGGGTACATTGGCCATG
GTCTTGTTCTCCTGCAGGATGTCATCCTCGGGAGCTGTTGGAGCCTGCTC
TTCATTATCCACTGGCTCGTACATATCTAGGCTGGCCAGGAAGTCGGCAT
GGTATTCCTCGACATTTCGCTTGATGGTCGCCGGTTTGAGCTCAACTGCA
TAAGCCTTCATCAGCTTGTAGATCTTACGCTTCACCATATGCATTATGTT
ATCAATATTCTCCTCGAAAATCTCTGGGGCAGCAGCCCTCATGTTCAGCA
TTTCGAATTTTAGCAACGGGAGCTTCAAGTACGAGTTGGGATACTGCGCA
CGTAGTAATTTGGGCTGGCGATCAATGTGACGAAGGATCTCCAAAAGATT
CCAAATGCTAACTCTCAACAATACATATGCATCAGCTCTGTTCTTAAGAT
GTTGCAAAGTATCTTGTTCAAATTGGATGTCATTTTGAAGCGTTTTCTTT
AGGTCCTTAATGCGCTCCAAGCGATTAATCTCTTCCTCTGACACATTGTT
GATCAGCACCCCTTTCAAGACACTGGCGCACTTCATCTTGGTTTCCAGCA
TTTCATGAGCCAACATGTCATTGACAATCATACGATGCAGTTTATCATTG
TTGTCCACCTGGCTCTTCATTCGTGGATAAATTTCCTTGGCCTGCGAACA
GAGTGTCACAAACTTAACCTCCTTGATTGTCTTTTCCACAGCCTTTAGCT
CCAGT
BO14489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PA | 1794 | CG14609-RA | 1005..1791 | 805..19 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 1129..1915 | 805..19 | 3920 | 99.9 | Minus |
CG14609-RA | 1993 | CG14609-RA | 1129..1915 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7202998..7203284 | 305..19 | 1435 | 100 | Minus |
3R | 32079331 | 3R | 7202781..7202940 | 465..306 | 800 | 100 | Minus |
3R | 32079331 | 3R | 7202380..7202527 | 722..575 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 7202580..7202694 | 578..464 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 7202235..7202318 | 805..722 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:06:07 has no hits.
BO14489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:31 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1005..1794 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:57 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1005..1794 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:27 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 1129..1924 | 10..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:17 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 1129..1924 | 10..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:17 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7202235..7202318 | 722..805 | 100 | -> | Minus |
3R | 7202381..7202527 | 575..721 | 99 | -> | Minus |
3R | 7202584..7202694 | 464..574 | 100 | -> | Minus |
3R | 7202783..7202940 | 306..463 | 100 | -> | Minus |
3R | 7202998..7203293 | 10..305 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:27 Download gff for
BO14489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3028103..3028249 | 575..721 | 99 | -> | Minus |
arm_3R | 3028306..3028416 | 464..574 | 100 | -> | Minus |
arm_3R | 3028505..3028662 | 306..463 | 100 | -> | Minus |
arm_3R | 3027957..3028040 | 722..805 | 100 | -> | Minus |
arm_3R | 3028720..3029015 | 10..305 | 98 | | Minus |
BO14489.5prime Sequence
825 bp (799 high quality bases) assembled on 2006-05-29
> BO14489.5prime
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCGAAGTT
BO14489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PA | 1794 | CG14609-RA | 1..809 | 17..825 | 4020 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 123..933 | 15..825 | 4040 | 99.9 | Plus |
CG14609-RA | 1993 | CG14609-RA | 123..933 | 15..825 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7201375..7201682 | 237..544 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 7201758..7202039 | 544..825 | 1395 | 99.6 | Plus |
3R | 32079331 | 3R | 7201092..7201313 | 15..236 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:36:07 has no hits.
BO14489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:32 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:59 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:17 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 117..933 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:54 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 117..933 | 9..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:54 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7201759..7202039 | 545..825 | 99 | | Plus |
3R | 7201086..7201313 | 9..236 | 99 | -> | Plus |
3R | 7201375..7201682 | 237..544 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:17 Download gff for
BO14489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3026808..3027035 | 9..236 | 99 | -> | Plus |
arm_3R | 3027097..3027404 | 237..544 | 100 | -> | Plus |
arm_3R | 3027481..3027761 | 545..825 | 99 | | Plus |
BO14489.complete Sequence
1825 bp assembled on 2008-08-14
GenBank Submission: FJ633150
> BO14489.complete
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCGAAGTTCAAGGAGTTGAACGATGAGTTCCGA
AACATGGAGGAGAAATCCCGGAAAAACCTGCAGCATAAATTGCAAATGCT
GTCCGCTCTAAAGAAACCGGCAGGTACATCGATTGCTAATTTCAATAAGC
CCAAGGAGGCGGCTCCAACGACGAATCTGAAGCGATATGTTCGGGAAACT
CAGAGCATGATGATTCTAAAACTGGAGCTAAAGGCTGTGGAAAAGACAAT
CAAGGAGGTTAAGTTTGTGACACTCTGTTCGCAGGCCAAGGAAATTTATC
CACGAATGAAGAGCCAGGTGGACAACAATGATAAACTGCATCGTATGATT
GTCAATGACATGTTGGCTCATGAAATGCTGGAAACCAAGATGAAGTGCGC
CAGTGTCTTGAAAGGGGTGCTGATCAACAATCTGTCAGAGGAAGAGATTA
ATCGCTTGGAGCGCATTAAGGACCTAAAGAAAACGCTTCAAAATGACATC
CAATTTGAACAAGATACTTTGCAACATCTTAAGAACAGAGCTGATGCATA
TGTATTGTTGAGAGTTAGCATTTGGAATCTTTTGGAGATCCTTCGTCACA
TTGATCGCCAGCCCAAATTACTACGTGCGCAGTATCCCAACTCGTACTTG
AAGCTCCCGTTGCTAAAATTCGAAATGCTGAACATGAGGGCTGCTGCCCC
AGAGATTTTCGAGGAGAATATTGATAACATAATGCATATGGTGAAGCGTA
AGATCTACAAGCTGATGAAGGCTTATGCAGTTGAGCTCAAACCGGCGACC
ATCAAGCGAAATGTCGAGGAATACCATGCCGACTTCCTGGCCAGCCTAGA
TATGTACGAGCCAGTGGATAATGAAGAGCAGGCTCCAACAGCTCCCGAGG
ATGACATCCTGCAGGAGAACAAGACCATGGCCAATGTACCCAACCGCAAA
CAAATCAAGGCCCAAAGTGCCAAGCTTGTGGAGGAGCTGGCCAAGCGGGA
TGAAATGGCAAGCTTTCTAGACCAT
BO14489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 1794 | CG14609-PB | 1..1791 | 17..1807 | 8940 | 99.9 | Plus |
CG14609-RA | 1794 | CG14609-PA | 1..1791 | 17..1807 | 8940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-RB | 2081 | CG14609-RB | 123..1915 | 15..1807 | 8950 | 99.9 | Plus |
CG14609-RA | 1993 | CG14609-RA | 123..1915 | 15..1807 | 8950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7201758..7202318 | 544..1104 | 2790 | 99.8 | Plus |
3R | 32079331 | 3R | 7201375..7201682 | 237..544 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 7202998..7203284 | 1521..1807 | 1435 | 100 | Plus |
3R | 32079331 | 3R | 7201092..7201313 | 15..236 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 7202781..7202940 | 1361..1520 | 800 | 100 | Plus |
3R | 32079331 | 3R | 7202380..7202527 | 1104..1251 | 740 | 100 | Plus |
3R | 32079331 | 3R | 7202580..7202694 | 1248..1362 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:02:37 has no hits.
BO14489.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:29 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 117..1924 | 9..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:05:55 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1915 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:43 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1915 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:23 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14609-RA | 125..1915 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:23 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7202998..7203284 | 1521..1809 | 99 | | Plus |
3R | 7201094..7201313 | 17..236 | 100 | -> | Plus |
3R | 7201375..7201682 | 237..544 | 100 | -> | Plus |
3R | 7201759..7202318 | 545..1104 | 99 | -> | Plus |
3R | 7202381..7202527 | 1105..1251 | 100 | -> | Plus |
3R | 7202584..7202694 | 1252..1362 | 100 | -> | Plus |
3R | 7202783..7202940 | 1363..1520 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:05:55 Download gff for
BO14489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3028103..3028249 | 1105..1251 | 100 | -> | Plus |
arm_3R | 3028306..3028416 | 1252..1362 | 100 | -> | Plus |
arm_3R | 3028505..3028662 | 1363..1520 | 100 | -> | Plus |
arm_3R | 3028720..3029006 | 1521..1809 | 99 | | Plus |
arm_3R | 3026816..3027035 | 17..236 | 100 | -> | Plus |
arm_3R | 3027097..3027404 | 237..544 | 100 | -> | Plus |
arm_3R | 3027481..3028040 | 545..1104 | 99 | -> | Plus |
BO14489.pep Sequence
Translation from 16 to 1825
> BO14489.pep
MPPCTLRQRGMAYIPRRDKNREKDVLAPKPVHPRSLRFHGFFGMSYVHQH
VMVDERWTPNSLTEQFKGMTDLLTRRLVFKNHESKANRQRYFRENKRLKL
QCRDGRAKLQNILINDNTHKIRNFLINHKPLQRLYQKMPIHLVVDNINQR
TFVMRKERDRLEFRLDQLKQHYKEQLLRRALLQNRIKYQNEFILDEELKS
RVFLKKIENSNVRLKAIKTINNTYKKMIQVLVHDEIFYEPILRSLSSDMD
DQSNFIKHILFLGMPAIAKFKELNDEFRNMEEKSRKNLQHKLQMLSALKK
PAGTSIANFNKPKEAAPTTNLKRYVRETQSMMILKLELKAVEKTIKEVKF
VTLCSQAKEIYPRMKSQVDNNDKLHRMIVNDMLAHEMLETKMKCASVLKG
VLINNLSEEEINRLERIKDLKKTLQNDIQFEQDTLQHLKNRADAYVLLRV
SIWNLLEILRHIDRQPKLLRAQYPNSYLKLPLLKFEMLNMRAAAPEIFEE
NIDNIMHMVKRKIYKLMKAYAVELKPATIKRNVEEYHADFLASLDMYEPV
DNEEQAPTAPEDDILQENKTMANVPNRKQIKAQSAKLVEELAKRDEMASF
LDH
BO14489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14609-PB | 597 | CG14609-PB | 1..597 | 1..597 | 3059 | 100 | Plus |
CG14609-PA | 597 | CG14609-PA | 1..597 | 1..597 | 3059 | 100 | Plus |