Clone BO14489 Report

Search the DGRC for BO14489

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG14609-RA
Protein status:BO14489.pep: Imported from assembly
Sequenced Size:1825

Clone Sequence Records

BO14489.3prime Sequence

805 bp (727 high quality bases) assembled on 2006-05-29

> BO14489.3prime
ATGGTCTAGAAAGCTTGCCATTTCATCCCGCTTGGCCAGCTCCTCCACAA
GCTTGGCACTTTGGGCCTTGATTTGTTTGCGGTTGGGTACATTGGCCATG
GTCTTGTTCTCCTGCAGGATGTCATCCTCGGGAGCTGTTGGAGCCTGCTC
TTCATTATCCACTGGCTCGTACATATCTAGGCTGGCCAGGAAGTCGGCAT
GGTATTCCTCGACATTTCGCTTGATGGTCGCCGGTTTGAGCTCAACTGCA
TAAGCCTTCATCAGCTTGTAGATCTTACGCTTCACCATATGCATTATGTT
ATCAATATTCTCCTCGAAAATCTCTGGGGCAGCAGCCCTCATGTTCAGCA
TTTCGAATTTTAGCAACGGGAGCTTCAAGTACGAGTTGGGATACTGCGCA
CGTAGTAATTTGGGCTGGCGATCAATGTGACGAAGGATCTCCAAAAGATT
CCAAATGCTAACTCTCAACAATACATATGCATCAGCTCTGTTCTTAAGAT
GTTGCAAAGTATCTTGTTCAAATTGGATGTCATTTTGAAGCGTTTTCTTT
AGGTCCTTAATGCGCTCCAAGCGATTAATCTCTTCCTCTGACACATTGTT
GATCAGCACCCCTTTCAAGACACTGGCGCACTTCATCTTGGTTTCCAGCA
TTTCATGAGCCAACATGTCATTGACAATCATACGATGCAGTTTATCATTG
TTGTCCACCTGGCTCTTCATTCGTGGATAAATTTCCTTGGCCTGCGAACA
GAGTGTCACAAACTTAACCTCCTTGATTGTCTTTTCCACAGCCTTTAGCT
CCAGT

BO14489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-PA 1794 CG14609-RA 1005..1791 805..19 3910 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-RB 2081 CG14609-RB 1129..1915 805..19 3920 99.9 Minus
CG14609-RA 1993 CG14609-RA 1129..1915 805..19 3920 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7202998..7203284 305..19 1435 100 Minus
3R 32079331 3R 7202781..7202940 465..306 800 100 Minus
3R 32079331 3R 7202380..7202527 722..575 725 99.3 Minus
3R 32079331 3R 7202580..7202694 578..464 560 99.1 Minus
3R 32079331 3R 7202235..7202318 805..722 420 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:06:07 has no hits.

BO14489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:31 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-PA 1005..1794 15..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:57 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-PA 1005..1794 15..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:27 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1129..1924 10..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:17 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 1129..1924 10..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:17 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7202235..7202318 722..805 100 -> Minus
3R 7202381..7202527 575..721 99 -> Minus
3R 7202584..7202694 464..574 100 -> Minus
3R 7202783..7202940 306..463 100 -> Minus
3R 7202998..7203293 10..305 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:27 Download gff for BO14489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3028103..3028249 575..721 99 -> Minus
arm_3R 3028306..3028416 464..574 100 -> Minus
arm_3R 3028505..3028662 306..463 100 -> Minus
arm_3R 3027957..3028040 722..805 100 -> Minus
arm_3R 3028720..3029015 10..305 98   Minus

BO14489.5prime Sequence

825 bp (799 high quality bases) assembled on 2006-05-29

> BO14489.5prime
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCGAAGTT

BO14489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-PA 1794 CG14609-RA 1..809 17..825 4020 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-RB 2081 CG14609-RB 123..933 15..825 4040 99.9 Plus
CG14609-RA 1993 CG14609-RA 123..933 15..825 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7201375..7201682 237..544 1540 100 Plus
3R 32079331 3R 7201758..7202039 544..825 1395 99.6 Plus
3R 32079331 3R 7201092..7201313 15..236 1110 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:36:07 has no hits.

BO14489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:32 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-PA 1..809 17..825 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:59 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-PA 1..809 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:17 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 117..933 9..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:54 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 117..933 9..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:54 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7201759..7202039 545..825 99   Plus
3R 7201086..7201313 9..236 99 -> Plus
3R 7201375..7201682 237..544 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:17 Download gff for BO14489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3026808..3027035 9..236 99 -> Plus
arm_3R 3027097..3027404 237..544 100 -> Plus
arm_3R 3027481..3027761 545..825 99   Plus

BO14489.complete Sequence

1825 bp assembled on 2008-08-14

GenBank Submission: FJ633150

> BO14489.complete
GAAGTTATCAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGG
CCTATATACCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCC
AAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTC
GTACGTGCATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCC
TAACCGAGCAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTG
TTCAAGAACCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAA
CAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATA
TTCTGATCAATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCAT
AAGCCGCTGCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGA
CAACATCAATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGG
AGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGT
AGAGCACTTTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGA
CGAGGAGTTGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATG
TGCGCCTAAAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATA
CAGGTGCTCGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCT
TAGCAGCGACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCC
TGGGCATGCCGGCGATTGCGAAGTTCAAGGAGTTGAACGATGAGTTCCGA
AACATGGAGGAGAAATCCCGGAAAAACCTGCAGCATAAATTGCAAATGCT
GTCCGCTCTAAAGAAACCGGCAGGTACATCGATTGCTAATTTCAATAAGC
CCAAGGAGGCGGCTCCAACGACGAATCTGAAGCGATATGTTCGGGAAACT
CAGAGCATGATGATTCTAAAACTGGAGCTAAAGGCTGTGGAAAAGACAAT
CAAGGAGGTTAAGTTTGTGACACTCTGTTCGCAGGCCAAGGAAATTTATC
CACGAATGAAGAGCCAGGTGGACAACAATGATAAACTGCATCGTATGATT
GTCAATGACATGTTGGCTCATGAAATGCTGGAAACCAAGATGAAGTGCGC
CAGTGTCTTGAAAGGGGTGCTGATCAACAATCTGTCAGAGGAAGAGATTA
ATCGCTTGGAGCGCATTAAGGACCTAAAGAAAACGCTTCAAAATGACATC
CAATTTGAACAAGATACTTTGCAACATCTTAAGAACAGAGCTGATGCATA
TGTATTGTTGAGAGTTAGCATTTGGAATCTTTTGGAGATCCTTCGTCACA
TTGATCGCCAGCCCAAATTACTACGTGCGCAGTATCCCAACTCGTACTTG
AAGCTCCCGTTGCTAAAATTCGAAATGCTGAACATGAGGGCTGCTGCCCC
AGAGATTTTCGAGGAGAATATTGATAACATAATGCATATGGTGAAGCGTA
AGATCTACAAGCTGATGAAGGCTTATGCAGTTGAGCTCAAACCGGCGACC
ATCAAGCGAAATGTCGAGGAATACCATGCCGACTTCCTGGCCAGCCTAGA
TATGTACGAGCCAGTGGATAATGAAGAGCAGGCTCCAACAGCTCCCGAGG
ATGACATCCTGCAGGAGAACAAGACCATGGCCAATGTACCCAACCGCAAA
CAAATCAAGGCCCAAAGTGCCAAGCTTGTGGAGGAGCTGGCCAAGCGGGA
TGAAATGGCAAGCTTTCTAGACCAT

BO14489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-RB 1794 CG14609-PB 1..1791 17..1807 8940 99.9 Plus
CG14609-RA 1794 CG14609-PA 1..1791 17..1807 8940 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-RB 2081 CG14609-RB 123..1915 15..1807 8950 99.9 Plus
CG14609-RA 1993 CG14609-RA 123..1915 15..1807 8950 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7201758..7202318 544..1104 2790 99.8 Plus
3R 32079331 3R 7201375..7201682 237..544 1540 100 Plus
3R 32079331 3R 7202998..7203284 1521..1807 1435 100 Plus
3R 32079331 3R 7201092..7201313 15..236 1110 100 Plus
3R 32079331 3R 7202781..7202940 1361..1520 800 100 Plus
3R 32079331 3R 7202380..7202527 1104..1251 740 100 Plus
3R 32079331 3R 7202580..7202694 1248..1362 560 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 11:02:37 has no hits.

BO14489.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:29 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 117..1924 9..1816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:05:55 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 125..1915 17..1809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:43 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 125..1915 17..1809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:23 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
CG14609-RA 125..1915 17..1809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:23 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7202998..7203284 1521..1809 99   Plus
3R 7201094..7201313 17..236 100 -> Plus
3R 7201375..7201682 237..544 100 -> Plus
3R 7201759..7202318 545..1104 99 -> Plus
3R 7202381..7202527 1105..1251 100 -> Plus
3R 7202584..7202694 1252..1362 100 -> Plus
3R 7202783..7202940 1363..1520 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:05:55 Download gff for BO14489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3028103..3028249 1105..1251 100 -> Plus
arm_3R 3028306..3028416 1252..1362 100 -> Plus
arm_3R 3028505..3028662 1363..1520 100 -> Plus
arm_3R 3028720..3029006 1521..1809 99   Plus
arm_3R 3026816..3027035 17..236 100 -> Plus
arm_3R 3027097..3027404 237..544 100 -> Plus
arm_3R 3027481..3028040 545..1104 99 -> Plus

BO14489.pep Sequence

Translation from 16 to 1825

> BO14489.pep
MPPCTLRQRGMAYIPRRDKNREKDVLAPKPVHPRSLRFHGFFGMSYVHQH
VMVDERWTPNSLTEQFKGMTDLLTRRLVFKNHESKANRQRYFRENKRLKL
QCRDGRAKLQNILINDNTHKIRNFLINHKPLQRLYQKMPIHLVVDNINQR
TFVMRKERDRLEFRLDQLKQHYKEQLLRRALLQNRIKYQNEFILDEELKS
RVFLKKIENSNVRLKAIKTINNTYKKMIQVLVHDEIFYEPILRSLSSDMD
DQSNFIKHILFLGMPAIAKFKELNDEFRNMEEKSRKNLQHKLQMLSALKK
PAGTSIANFNKPKEAAPTTNLKRYVRETQSMMILKLELKAVEKTIKEVKF
VTLCSQAKEIYPRMKSQVDNNDKLHRMIVNDMLAHEMLETKMKCASVLKG
VLINNLSEEEINRLERIKDLKKTLQNDIQFEQDTLQHLKNRADAYVLLRV
SIWNLLEILRHIDRQPKLLRAQYPNSYLKLPLLKFEMLNMRAAAPEIFEE
NIDNIMHMVKRKIYKLMKAYAVELKPATIKRNVEEYHADFLASLDMYEPV
DNEEQAPTAPEDDILQENKTMANVPNRKQIKAQSAKLVEELAKRDEMASF
LDH

BO14489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14609-PB 597 CG14609-PB 1..597 1..597 3059 100 Plus
CG14609-PA 597 CG14609-PA 1..597 1..597 3059 100 Plus