Clone BO14490 Report

Search the DGRC for BO14490

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG32396-RA
Protein status:BO14490.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO14490.3prime Sequence

807 bp (793 high quality bases) assembled on 2006-05-29

> BO14490.3prime
ATGGTCTAGAAAGCTTGCTTCGGTGCAATATTGACAATGGGCTTCGGGCG
TGGCCTCCTCTTCACCGCTTTCGGCGCTTCCACTTCGGCCACCGCCTCCT
CCACCGCCACCACCGGAATCCTCGCCCTCAGCACTACTGCGGTAATCATC
GATGATGGCTTGTAACTCCTGCTGCGCATCCTGGAACTCCTGTTCCTCCA
TTCCCTCTCCCGTGTACCAGTGAAGATGGGCCTTGCGCCGCAACATGGAC
ATGGAAGCGTCCAGTAATCGCTGGAACAGCGTCTGAATCGCCGTTGTGTT
GCCAATGAATGTAGCTGACATCTTGAGGCCCCTCGGCGGTATATCGCAAA
TAGCCGTCTTGATATTGTTGGGTATCCAGTCCACGAAATTGTTGATATTC
TTATTTCTCACCCCAGTCATCAGTTGATCCACCTCACGCGGTGACATTCT
TCCTCGGAAAATTCCAGCAGCGGTCAGCAGTTTGCCCTTTCGAAGATCGA
TGGCACAGAGCAGATTATTACTGTAGAAGATCTGCTGCACCAGCTCCGAA
ACGGTACCCTTGCTGAACTGCTGCTGCTTGCAAGTGACCAATGGTGCGAA
TCCCGGTATGAGGAAGTGCAGCCGCGGGAATGGCACCATATTTACATAGA
TCTTGCGCAATCCAGCATTCAGTTGGCCAGGAAACCGCAGGCAAGTGGTT
ATACCCGACATGGTCAGGGCTACTATGTGGTTAATGTGCTCGTAGCCGGA
CATCTTGAGCTTCAGGTTTCTATTGCAGATTTGGAACAGTGCCTCGNTAT
CAAGGCA

BO14490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-PA 1389 CG32396-RA 598..1386 807..19 3926 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-RA 1649 CG32396-RA 732..1520 807..19 3934 99.9 Minus
betaTub85D-RA 1841 CG9359-RA 924..1045 714..593 220 79.7 Minus
betaTub60D-RB 2515 CG3401-RB 907..1028 717..596 205 78.9 Minus
betaTub85D-RA 1841 CG9359-RA 1251..1355 387..283 195 79 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6531512..6532300 807..19 3934 99.9 Minus
3R 32079331 3R 9409179..9409300 593..714 220 78.7 Plus
2R 25286936 2R 24311491..24311612 717..596 205 77.9 Minus
3R 32079331 3R 9408869..9408973 283..387 195 79 Plus
Blast to na_te.dros performed on 2015-02-12 03:46:07 has no hits.

BO14490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:33 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-PA 599..1389 15..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:00 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-PA 599..1389 15..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:36 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 733..1527 11..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:37 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 733..1527 11..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:37 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6531513..6532307 11..806 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:36 Download gff for BO14490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6524613..6525407 11..806 99   Minus

BO14490.5prime Sequence

858 bp (833 high quality bases) assembled on 2006-05-29

> BO14490.5prime
GAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGCAGATCGGCGGAG
CCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATTTCACATGAACAC
GGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAGTCCACTTCAGCT
GGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCAAACGGTTCTATG
CCCGCACCATACTGATAGACACGGAAGCCAGCACCATTCAGCGTCTCAAC
GCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGCTGGATCGGAGAG
TGCTGGGAACAACTTTGCACGTGGCTATCATACGGATGGTGCCGCCATTC
TAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAATCGGTGGATTCG
TTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGGAACTGGCTCCGG
CTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGTATCCGGATAATT
TACTCTGCAACTATGTGACCATTCCGTCGCCGAATATGTCGCAGGTGGTT
GTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTGGTTAACAATTC
GCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCCAAATCTGCAATA
GAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATTAACCACATAGTA
GCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTTTCCTGGCCAACT
GAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGCCATTCCCGCGGC
TGCACTTCCTCATACCGGGGATCGCACCATTGGTCACTTGNCAGCAGCAG
CAGTTCAG

BO14490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-PA 1389 CG32396-RA 1..842 17..858 4116 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-RA 1649 CG32396-RA 129..976 11..858 4169 99.4 Plus
betaTub85D-RA 1841 CG9359-RA 924..1045 707..828 190 78 Plus
betaTub56D-RA 1701 CG9277-RA 905..1016 702..813 185 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6530972..6531756 74..858 3869 99.5 Plus
3L 28110227 3L 6530857..6530919 11..73 300 98.4 Plus
3R 32079331 3R 9409179..9409300 828..707 190 77 Minus
2R 25286936 2R 19448004..19448115 813..702 185 77.7 Minus
Blast to na_te.dros performed on 2015-02-02 08:10:43 has no hits.

BO14490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:35 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:01 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:51 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 122..976 3..858 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:10 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 122..976 3..858 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:10 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6530850..6530919 3..73 92 -> Plus
3L 6530972..6531756 74..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:51 Download gff for BO14490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6523950..6524019 3..73 92 -> Plus
arm_3L 6524072..6524856 74..858 99   Plus

BO14490.complete Sequence

1420 bp assembled on 2006-10-11

GenBank Submission: FJ633151

> BO14490.complete
GAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGCAGATCGGCGGAG
CCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATTTCACATGAACAC
GGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAGTCCACTTCAGCT
GGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCAAACGGTTCTATG
CCCGCACCATACTGATAGACACGGAAGCCAGCACCATTCAGCGTCTCAAC
GCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGCTGGATCGGAGAG
TGCTGGGAACAACTTTGCACGTGGCTATCATACGGATGGTGCCGCCATTC
TAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAATCGGTGGATTCG
TTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGGAACTGGCTCCGG
CTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGTATCCGGATAATT
TACTCTGCAACTATGTGACCATTCCGTCGCCGAATATGTCGCAGGTGGTT
GTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTGGTTAACAATTC
GCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCCAAATCTGCAATA
GAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATTAACCACATAGTA
GCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTTTCCTGGCCAACT
GAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGCCATTCCCGCGGC
TGCACTTCCTCATACCGGGATTCGCACCATTGGTCACTTGCAAGCAGCAG
CAGTTCAGCAAGGGTACCGTTTCGGAGCTGGTGCAGCAGATCTTCTACAG
TAATAATCTGCTCTGTGCCATCGATCTTCGAAAGGGCAAACTGCTGACCG
CTGCTGGAATTTTCCGAGGAAGAATGTCACCGCGTGAGGTGGATCAACTG
ATGACTGGGGTGAGAAATAAGAATATCAACAATTTCGTGGACTGGATACC
CAACAATATCAAGACGGCTATTTGCGATATACCGCCGAGGGGCCTCAAGA
TGTCAGCTACATTCATTGGCAACACAACGGCGATTCAGACGCTGTTCCAG
CGATTACTGGACGCTTCCATGTCCATGTTGCGGCGCAAGGCCCATCTTCA
CTGGTACACGGGAGAGGGAATGGAGGAACAGGAGTTCCAGGATGCGCAGC
AGGAGTTACAAGCCATCATCGATGATTACCGCAGTAGTGCTGAGGGCGAG
GATTCCGGTGGTGGCGGTGGAGGAGGCGGTGGCCGAAGTGGAAGCGCCGA
AAGCGGTGAAGAGGAGGCCACGCCCGAAGCCCATTGTCAATATTGCACCG
AAGCAAGCTTTCTAGACCAT

BO14490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-RA 1389 CG32396-PA 1..1386 17..1402 6930 100 Plus
betaTub85D-RA 1341 CG9359-PA 694..815 707..828 220 78.7 Plus
betaTub60D-RB 1362 CG3401-PB 706..827 704..825 205 77.9 Plus
betaTub85D-RA 1341 CG9359-PA 1021..1125 1034..1138 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-RA 1649 CG32396-RA 129..1520 11..1402 6945 99.9 Plus
betaTub85D-RA 1841 CG9359-RA 924..1045 707..828 220 78.7 Plus
betaTub60D-RB 2515 CG3401-RB 907..1028 704..825 205 77.9 Plus
betaTub85D-RA 1841 CG9359-RA 1251..1355 1034..1138 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6530972..6532300 74..1402 6645 100 Plus
3L 28110227 3L 6530857..6530919 11..73 300 98.4 Plus
3R 32079331 3R 9409179..9409300 828..707 220 78.7 Minus
2R 25286936 2R 24311491..24311612 704..825 205 77.9 Plus
2R 25286936 2R 19447992..19448115 825..702 200 77.4 Minus
3R 32079331 3R 9408869..9408973 1138..1034 195 79 Minus
Blast to na_te.dros performed on 2014-11-27 16:59:26 has no hits.

BO14490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:00 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 1..1389 17..1406 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:34 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 122..1527 3..1410 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:41 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 135..1520 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:00 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 122..1527 3..1410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:49 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
CG32396-RA 135..1520 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:49 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6530863..6530919 17..73 100 -> Plus
3L 6530972..6532300 74..1404 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:41 Download gff for BO14490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6523963..6524019 17..73 100 -> Plus
arm_3L 6524072..6525400 74..1404 99   Plus

BO14490.pep Sequence

Translation from 16 to 1420

> BO14490.pep
MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINV
FFNATASKRFYARTILIDTEASTIQRLNASSQLYRPENFVAGSESAGNNF
ARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLI
MEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFC
LDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLR
KIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLC
AIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKT
AICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGE
GMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESGEEE
ATPEAHCQYCTEASFLDH

BO14490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32396-PA 462 CG32396-PA 1..462 1..462 2405 100 Plus
betaTub56D-PB 447 CG9277-PB 1..427 1..426 1280 55.4 Plus
betaTub85D-PA 446 CG9359-PA 1..444 1..434 1263 54.4 Plus
betaTub60D-PB 453 CG3401-PB 1..432 1..426 1255 54.3 Plus
betaTub60D-PA 454 CG3401-PA 1..433 1..426 1253 53.9 Plus