Clone Sequence Records
BO14490.3prime Sequence
807 bp (793 high quality bases) assembled on 2006-05-29
> BO14490.3prime
ATGGTCTAGAAAGCTTGCTTCGGTGCAATATTGACAATGGGCTTCGGGCG
TGGCCTCCTCTTCACCGCTTTCGGCGCTTCCACTTCGGCCACCGCCTCCT
CCACCGCCACCACCGGAATCCTCGCCCTCAGCACTACTGCGGTAATCATC
GATGATGGCTTGTAACTCCTGCTGCGCATCCTGGAACTCCTGTTCCTCCA
TTCCCTCTCCCGTGTACCAGTGAAGATGGGCCTTGCGCCGCAACATGGAC
ATGGAAGCGTCCAGTAATCGCTGGAACAGCGTCTGAATCGCCGTTGTGTT
GCCAATGAATGTAGCTGACATCTTGAGGCCCCTCGGCGGTATATCGCAAA
TAGCCGTCTTGATATTGTTGGGTATCCAGTCCACGAAATTGTTGATATTC
TTATTTCTCACCCCAGTCATCAGTTGATCCACCTCACGCGGTGACATTCT
TCCTCGGAAAATTCCAGCAGCGGTCAGCAGTTTGCCCTTTCGAAGATCGA
TGGCACAGAGCAGATTATTACTGTAGAAGATCTGCTGCACCAGCTCCGAA
ACGGTACCCTTGCTGAACTGCTGCTGCTTGCAAGTGACCAATGGTGCGAA
TCCCGGTATGAGGAAGTGCAGCCGCGGGAATGGCACCATATTTACATAGA
TCTTGCGCAATCCAGCATTCAGTTGGCCAGGAAACCGCAGGCAAGTGGTT
ATACCCGACATGGTCAGGGCTACTATGTGGTTAATGTGCTCGTAGCCGGA
CATCTTGAGCTTCAGGTTTCTATTGCAGATTTGGAACAGTGCCTCGNTAT
CAAGGCA
BO14490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-PA | 1389 | CG32396-RA | 598..1386 | 807..19 | 3926 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-RA | 1649 | CG32396-RA | 732..1520 | 807..19 | 3934 | 99.9 | Minus |
betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 714..593 | 220 | 79.7 | Minus |
betaTub60D-RB | 2515 | CG3401-RB | 907..1028 | 717..596 | 205 | 78.9 | Minus |
betaTub85D-RA | 1841 | CG9359-RA | 1251..1355 | 387..283 | 195 | 79 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6531512..6532300 | 807..19 | 3934 | 99.9 | Minus |
3R | 32079331 | 3R | 9409179..9409300 | 593..714 | 220 | 78.7 | Plus |
2R | 25286936 | 2R | 24311491..24311612 | 717..596 | 205 | 77.9 | Minus |
3R | 32079331 | 3R | 9408869..9408973 | 283..387 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:46:07 has no hits.
BO14490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:33 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-PA | 599..1389 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:00 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-PA | 599..1389 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:36 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 733..1527 | 11..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:37 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 733..1527 | 11..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:37 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6531513..6532307 | 11..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:36 Download gff for
BO14490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6524613..6525407 | 11..806 | 99 | | Minus |
BO14490.5prime Sequence
858 bp (833 high quality bases) assembled on 2006-05-29
> BO14490.5prime
GAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGCAGATCGGCGGAG
CCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATTTCACATGAACAC
GGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAGTCCACTTCAGCT
GGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCAAACGGTTCTATG
CCCGCACCATACTGATAGACACGGAAGCCAGCACCATTCAGCGTCTCAAC
GCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGCTGGATCGGAGAG
TGCTGGGAACAACTTTGCACGTGGCTATCATACGGATGGTGCCGCCATTC
TAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAATCGGTGGATTCG
TTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGGAACTGGCTCCGG
CTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGTATCCGGATAATT
TACTCTGCAACTATGTGACCATTCCGTCGCCGAATATGTCGCAGGTGGTT
GTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTGGTTAACAATTC
GCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCCAAATCTGCAATA
GAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATTAACCACATAGTA
GCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTTTCCTGGCCAACT
GAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGCCATTCCCGCGGC
TGCACTTCCTCATACCGGGGATCGCACCATTGGTCACTTGNCAGCAGCAG
CAGTTCAG
BO14490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-PA | 1389 | CG32396-RA | 1..842 | 17..858 | 4116 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-RA | 1649 | CG32396-RA | 129..976 | 11..858 | 4169 | 99.4 | Plus |
betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 707..828 | 190 | 78 | Plus |
betaTub56D-RA | 1701 | CG9277-RA | 905..1016 | 702..813 | 185 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6530972..6531756 | 74..858 | 3869 | 99.5 | Plus |
3L | 28110227 | 3L | 6530857..6530919 | 11..73 | 300 | 98.4 | Plus |
3R | 32079331 | 3R | 9409179..9409300 | 828..707 | 190 | 77 | Minus |
2R | 25286936 | 2R | 19448004..19448115 | 813..702 | 185 | 77.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:10:43 has no hits.
BO14490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:35 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:01 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:51 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 122..976 | 3..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:10 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 122..976 | 3..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:10 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6530850..6530919 | 3..73 | 92 | -> | Plus |
3L | 6530972..6531756 | 74..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:51 Download gff for
BO14490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6523950..6524019 | 3..73 | 92 | -> | Plus |
arm_3L | 6524072..6524856 | 74..858 | 99 | | Plus |
BO14490.complete Sequence
1420 bp assembled on 2006-10-11
GenBank Submission: FJ633151
> BO14490.complete
GAAGTTATCAGTCGACATGAGGGAGATTGTCACACTGCAGATCGGCGGAG
CCGGAAATGCCATCGGAGATTCTTTCTGGCACGTGATTTCACATGAACAC
GGTGTGGATTATGCTTCTGGTCGATTTGGCGGCACCAGTCCACTTCAGCT
GGAGCGGATCAATGTGTTCTTTAACGCAACGGCCAGCAAACGGTTCTATG
CCCGCACCATACTGATAGACACGGAAGCCAGCACCATTCAGCGTCTCAAC
GCCAGCAGTCAGCTGTATAGGCCGGAGAACTTTGTGGCTGGATCGGAGAG
TGCTGGGAACAACTTTGCACGTGGCTATCATACGGATGGTGCCGCCATTC
TAGATCAGGTGCTAGAAAATACGCGCCGGGAGGTCGAATCGGTGGATTCG
TTGCAGGGCTTTCAGTTGCTCCACTCTATCGGAGGCGGAACTGGCTCCGG
CTTGACCTCTCTAATAATGGAGGCCCTGGTGGAGCAGTATCCGGATAATT
TACTCTGCAACTATGTGACCATTCCGTCGCCGAATATGTCGCAGGTGGTT
GTGGAACCCTATAATGCCCTACTTAGTACTCCCGCCTTGGTTAACAATTC
GCATTTAACCTTCTGCCTTGATAACGAGGCACTGTTCCAAATCTGCAATA
GAAACCTGAAGCTCAAGATGTCCGGCTACGAGCACATTAACCACATAGTA
GCCCTGACCATGTCGGGTATAACCACTTGCCTGCGGTTTCCTGGCCAACT
GAATGCTGGATTGCGCAAGATCTATGTAAATATGGTGCCATTCCCGCGGC
TGCACTTCCTCATACCGGGATTCGCACCATTGGTCACTTGCAAGCAGCAG
CAGTTCAGCAAGGGTACCGTTTCGGAGCTGGTGCAGCAGATCTTCTACAG
TAATAATCTGCTCTGTGCCATCGATCTTCGAAAGGGCAAACTGCTGACCG
CTGCTGGAATTTTCCGAGGAAGAATGTCACCGCGTGAGGTGGATCAACTG
ATGACTGGGGTGAGAAATAAGAATATCAACAATTTCGTGGACTGGATACC
CAACAATATCAAGACGGCTATTTGCGATATACCGCCGAGGGGCCTCAAGA
TGTCAGCTACATTCATTGGCAACACAACGGCGATTCAGACGCTGTTCCAG
CGATTACTGGACGCTTCCATGTCCATGTTGCGGCGCAAGGCCCATCTTCA
CTGGTACACGGGAGAGGGAATGGAGGAACAGGAGTTCCAGGATGCGCAGC
AGGAGTTACAAGCCATCATCGATGATTACCGCAGTAGTGCTGAGGGCGAG
GATTCCGGTGGTGGCGGTGGAGGAGGCGGTGGCCGAAGTGGAAGCGCCGA
AAGCGGTGAAGAGGAGGCCACGCCCGAAGCCCATTGTCAATATTGCACCG
AAGCAAGCTTTCTAGACCAT
BO14490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-RA | 1389 | CG32396-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
betaTub85D-RA | 1341 | CG9359-PA | 694..815 | 707..828 | 220 | 78.7 | Plus |
betaTub60D-RB | 1362 | CG3401-PB | 706..827 | 704..825 | 205 | 77.9 | Plus |
betaTub85D-RA | 1341 | CG9359-PA | 1021..1125 | 1034..1138 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-RA | 1649 | CG32396-RA | 129..1520 | 11..1402 | 6945 | 99.9 | Plus |
betaTub85D-RA | 1841 | CG9359-RA | 924..1045 | 707..828 | 220 | 78.7 | Plus |
betaTub60D-RB | 2515 | CG3401-RB | 907..1028 | 704..825 | 205 | 77.9 | Plus |
betaTub85D-RA | 1841 | CG9359-RA | 1251..1355 | 1034..1138 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6530972..6532300 | 74..1402 | 6645 | 100 | Plus |
3L | 28110227 | 3L | 6530857..6530919 | 11..73 | 300 | 98.4 | Plus |
3R | 32079331 | 3R | 9409179..9409300 | 828..707 | 220 | 78.7 | Minus |
2R | 25286936 | 2R | 24311491..24311612 | 704..825 | 205 | 77.9 | Plus |
2R | 25286936 | 2R | 19447992..19448115 | 825..702 | 200 | 77.4 | Minus |
3R | 32079331 | 3R | 9408869..9408973 | 1138..1034 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:26 has no hits.
BO14490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:00 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 1..1389 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:34 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 122..1527 | 3..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:41 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 135..1520 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:00 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 122..1527 | 3..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:49 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32396-RA | 135..1520 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:49 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6530863..6530919 | 17..73 | 100 | -> | Plus |
3L | 6530972..6532300 | 74..1404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:41 Download gff for
BO14490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6523963..6524019 | 17..73 | 100 | -> | Plus |
arm_3L | 6524072..6525400 | 74..1404 | 99 | | Plus |
BO14490.pep Sequence
Translation from 16 to 1420
> BO14490.pep
MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINV
FFNATASKRFYARTILIDTEASTIQRLNASSQLYRPENFVAGSESAGNNF
ARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLI
MEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVNNSHLTFC
LDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLR
KIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLC
AIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKT
AICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGE
GMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESGEEE
ATPEAHCQYCTEASFLDH
BO14490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32396-PA | 462 | CG32396-PA | 1..462 | 1..462 | 2405 | 100 | Plus |
betaTub56D-PB | 447 | CG9277-PB | 1..427 | 1..426 | 1280 | 55.4 | Plus |
betaTub85D-PA | 446 | CG9359-PA | 1..444 | 1..434 | 1263 | 54.4 | Plus |
betaTub60D-PB | 453 | CG3401-PB | 1..432 | 1..426 | 1255 | 54.3 | Plus |
betaTub60D-PA | 454 | CG3401-PA | 1..433 | 1..426 | 1253 | 53.9 | Plus |