Clone Sequence Records
BO14492.3prime Sequence
183 bp (159 high quality bases) assembled on 2006-05-29
> BO14492.3prime
ATGGTCTAGAAAGCTTGCCTTAAAAACTGTTCGCTTAATCAGCTTGGATG
GCGTTTTTCTTATGTTTGTGGATGAACTAGGAATGTCCTGCAGTCGGCCC
TTTTCAGTTGGTTTTGACTTTACCAACTGTTCCGTTGTCTTGACTTGACT
TGGCTTCTTATTAATTTTTTTCTCACCGACCGA
BO14492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-PA | 480 | CG5968-RA | 313..477 | 183..19 | 800 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-RB | 723 | CG5968-RB | 386..550 | 183..19 | 810 | 99.4 | Minus |
| CG5968-RA | 581 | CG5968-RA | 386..550 | 183..19 | 810 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16549354..16549518 | 19..183 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:31:55 has no hits.
BO14492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:38 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-PA | 314..480 | 15..182 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:05 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-PA | 314..480 | 15..182 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:10 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 387..555 | 13..182 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:17 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 387..555 | 13..182 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:17 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16549349..16549517 | 13..182 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:10 Download gff for
BO14492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16549349..16549517 | 13..182 | 98 | | Plus |
BO14492.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-29
> BO14492.5prime
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGGCAAGCT
TTCTAGACC
BO14492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-PA | 480 | CG5968-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-RB | 723 | CG5968-RB | 74..550 | 17..493 | 2385 | 100 | Plus |
| CG5968-RA | 581 | CG5968-RA | 74..550 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16549354..16549647 | 493..200 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 16549701..16549886 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:41:01 has no hits.
BO14492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:39 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:07 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:03:11 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:48 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 17..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:48 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16549349..16549646 | 201..499 | 99 | <- | Minus |
| 2L | 16549703..16549886 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:03:11 Download gff for
BO14492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16549349..16549646 | 201..499 | 99 | <- | Minus |
| arm_2L | 16549703..16549886 | 17..200 | 100 | | Minus |
BO14492.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ633152
> BO14492.complete
GAAGTTATCAGTCGACATGCCCAACTTTAATGGGGCTATTATAGTGCACA
CACTTCAGTTGTTGAAAGCGCCGGCGACACTGCGAGAAATAGTGGTAACC
ATAGCCAAAAATACGGAATTATCGCAAGATGAGCTTAAAGAGCCTGTGAA
ACAAACCCTTGAAATGGGCCATCGCTTGGGATTCCTGCAGAAACTCGACG
GTCGCTACTTTTTGATGAATGTGACCTTCGAGACATTGATGTCTGAGATG
GAGGCCCTTGACAAAGAAGAATCTCCGGAGAAGTCACTTAAAAAGAAAAA
GAAATTAATACCCAAGACTCCTTTATCGTCGGTCGCTGAGAAAAAAATTA
ATAAGAAGCCAAGTCAAGTCAAGACAACGGAACAGTTGGTAAAGTCAAAA
CCAACTGAAAAGGGCCGACTGCAGGACATTCCTAGTTCATCCACAAACAT
AAGAAAAACGCCATCCAAGCTGATTAAGCGAACAGTTTTTAAGGCAAGCT
TTCTAGACCAT
BO14492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-RB | 480 | CG5968-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
| CG5968-RA | 480 | CG5968-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-RB | 723 | CG5968-RB | 74..550 | 17..493 | 2385 | 100 | Plus |
| CG5968-RA | 581 | CG5968-RA | 74..550 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16549354..16549647 | 493..200 | 1470 | 100 | Minus |
| 2L | 23513712 | 2L | 16549701..16549886 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:07 has no hits.
BO14492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:02 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:35 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:07 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..550 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:02 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..555 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:52 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5968-RA | 74..550 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:52 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16549352..16549646 | 201..495 | 99 | <- | Minus |
| 2L | 16549703..16549886 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:07 Download gff for
BO14492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16549352..16549646 | 201..495 | 99 | <- | Minus |
| arm_2L | 16549703..16549886 | 17..200 | 100 | | Minus |
BO14492.pep Sequence
Translation from 16 to 511
> BO14492.pep
MPNFNGAIIVHTLQLLKAPATLREIVVTIAKNTELSQDELKEPVKQTLEM
GHRLGFLQKLDGRYFLMNVTFETLMSEMEALDKEESPEKSLKKKKKLIPK
TPLSSVAEKKINKKPSQVKTTEQLVKSKPTEKGRLQDIPSSSTNIRKTPS
KLIKRTVFKASFLDH
BO14492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5968-PB | 159 | CG5968-PB | 1..159 | 1..159 | 788 | 100 | Plus |
| CG5968-PA | 159 | CG5968-PA | 1..159 | 1..159 | 788 | 100 | Plus |
