Clone BO14493 Report

Search the DGRC for BO14493

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRpL27-RA
Protein status:BO14493.pep: validated full length
Sequenced Size:439

Clone Sequence Records

BO14493.5prime Sequence

437 bp (436 high quality bases) assembled on 2006-05-29

> BO14493.5prime
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCGCAAGCTTTCTAGACC

BO14493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4759-PA 408 RpL27-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..512 17..421 2025 100 Plus
RpL27-RC 544 CG4759-RC 49..453 17..421 2025 100 Plus
RpL27-RB 603 CG4759-RB 108..512 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684098..25684502 421..17 2025 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:55:13 has no hits.

BO14493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:41 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-PA 314..341 59..86 83   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:09 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4759-PA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:34 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 17..428 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:43 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 17..428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:43 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25684092..25684502 17..428 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:34 Download gff for BO14493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509814..21510224 17..428 99   Minus

BO14493.3prime Sequence

437 bp (436 high quality bases) assembled on 2006-05-29

> BO14493.3prime
ATGGTCTAGAAAGCTTGCGAAACGCAGCTTCTGGAAGAACCACTTGTTCT
TGCCCTCCTTGTAGACGGACTCGAACTTGACGCGGGTCTGGAAGCGGTGC
GTCTTGCGCTTTACGGGATCCTTCAGGTCCTTGGGCGACAGCTTCTCAAA
GCTGATGTCGTGCGCCGTGTAGCGGGTGGGCATCAGATGATTGTAGTTCA
GGCTCTTCAGGAAGGGCTTGACCTTGGACTTCTTCTTCAGCTTGTTCTTG
CCCATCTTCTTGGTCACCTTGCGCGGGTAGCGATCGATACCGGCGACGAG
GGCGTGTCCGAAGGGCTTCTCCGGGGTTCCATCGTCGTGGGTCTTGACGA
TGATGGCCTTGCGACCGGCGTAACGTCCGCTAAGGACGATTACGATCTTG
CCCTGCTTCATGATTTTCCTCATGTCGACTGATAACT

BO14493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4759-PA 408 RpL27-RA 1..405 423..19 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..512 423..19 2025 100 Minus
RpL27-RC 544 CG4759-RC 49..453 423..19 2025 100 Minus
RpL27-RB 603 CG4759-RB 108..512 423..19 2025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684098..25684502 19..423 2025 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:08:18 has no hits.

BO14493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:40 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-PA 314..341 354..381 83   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:08 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4759-PA 1..408 15..423 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:32 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 12..423 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:55 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..518 12..423 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:55 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25684092..25684502 12..423 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:32 Download gff for BO14493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509814..21510224 12..423 99   Plus

BO14493.complete Sequence

439 bp assembled on 2006-10-11

GenBank Submission: FJ633153

> BO14493.complete
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCGCAAGCTTTCTAGACCAT

BO14493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 408 CG4759-PD 1..405 17..421 2025 100 Plus
RpL27-RC 408 CG4759-PC 1..405 17..421 2025 100 Plus
RpL27-RB 408 CG4759-PB 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-RD 987 CG4759-RD 108..512 17..421 2025 100 Plus
RpL27-RC 544 CG4759-RC 49..453 17..421 2025 100 Plus
RpL27-RB 603 CG4759-RB 108..512 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25684098..25684502 421..17 2025 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:59:26 has no hits.

BO14493.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:04 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:37 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 82..492 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:14 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..512 17..423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:05 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RA 82..492 17..428 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:15 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27-RB 108..512 17..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:15 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25684096..25684502 17..423 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:14 Download gff for BO14493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21509818..21510224 17..423 99   Minus

BO14493.pep Sequence

Translation from 16 to 439

> BO14493.pep
MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYP
RKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDL
KDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRFASFLDH

BO14493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27-PD 135 CG4759-PD 1..135 1..135 710 100 Plus
RpL27-PC 135 CG4759-PC 1..135 1..135 710 100 Plus
RpL27-PB 135 CG4759-PB 1..135 1..135 710 100 Plus
RpL27-PA 135 CG4759-PA 1..135 1..135 710 100 Plus