Clone Sequence Records
BO14493.5prime Sequence
437 bp (436 high quality bases) assembled on 2006-05-29
> BO14493.5prime
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCGCAAGCTTTCTAGACC
BO14493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4759-PA | 408 | RpL27-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..512 | 17..421 | 2025 | 100 | Plus |
RpL27-RC | 544 | CG4759-RC | 49..453 | 17..421 | 2025 | 100 | Plus |
RpL27-RB | 603 | CG4759-RB | 108..512 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684098..25684502 | 421..17 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:55:13 has no hits.
BO14493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:41 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-PA | 314..341 | 59..86 | 83 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:09 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4759-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:34 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:43 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 17..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:43 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684092..25684502 | 17..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:34 Download gff for
BO14493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509814..21510224 | 17..428 | 99 | | Minus |
BO14493.3prime Sequence
437 bp (436 high quality bases) assembled on 2006-05-29
> BO14493.3prime
ATGGTCTAGAAAGCTTGCGAAACGCAGCTTCTGGAAGAACCACTTGTTCT
TGCCCTCCTTGTAGACGGACTCGAACTTGACGCGGGTCTGGAAGCGGTGC
GTCTTGCGCTTTACGGGATCCTTCAGGTCCTTGGGCGACAGCTTCTCAAA
GCTGATGTCGTGCGCCGTGTAGCGGGTGGGCATCAGATGATTGTAGTTCA
GGCTCTTCAGGAAGGGCTTGACCTTGGACTTCTTCTTCAGCTTGTTCTTG
CCCATCTTCTTGGTCACCTTGCGCGGGTAGCGATCGATACCGGCGACGAG
GGCGTGTCCGAAGGGCTTCTCCGGGGTTCCATCGTCGTGGGTCTTGACGA
TGATGGCCTTGCGACCGGCGTAACGTCCGCTAAGGACGATTACGATCTTG
CCCTGCTTCATGATTTTCCTCATGTCGACTGATAACT
BO14493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4759-PA | 408 | RpL27-RA | 1..405 | 423..19 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..512 | 423..19 | 2025 | 100 | Minus |
RpL27-RC | 544 | CG4759-RC | 49..453 | 423..19 | 2025 | 100 | Minus |
RpL27-RB | 603 | CG4759-RB | 108..512 | 423..19 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684098..25684502 | 19..423 | 2025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:08:18 has no hits.
BO14493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:40 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-PA | 314..341 | 354..381 | 83 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:08 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4759-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:32 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 12..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:55 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..518 | 12..423 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:55 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684092..25684502 | 12..423 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:32 Download gff for
BO14493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509814..21510224 | 12..423 | 99 | | Plus |
BO14493.complete Sequence
439 bp assembled on 2006-10-11
GenBank Submission: FJ633153
> BO14493.complete
GAAGTTATCAGTCGACATGAGGAAAATCATGAAGCAGGGCAAGATCGTAA
TCGTCCTTAGCGGACGTTACGCCGGTCGCAAGGCCATCATCGTCAAGACC
CACGACGATGGAACCCCGGAGAAGCCCTTCGGACACGCCCTCGTCGCCGG
TATCGATCGCTACCCGCGCAAGGTGACCAAGAAGATGGGCAAGAACAAGC
TGAAGAAGAAGTCCAAGGTCAAGCCCTTCCTGAAGAGCCTGAACTACAAT
CATCTGATGCCCACCCGCTACACGGCGCACGACATCAGCTTTGAGAAGCT
GTCGCCCAAGGACCTGAAGGATCCCGTAAAGCGCAAGACGCACCGCTTCC
AGACCCGCGTCAAGTTCGAGTCCGTCTACAAGGAGGGCAAGAACAAGTGG
TTCTTCCAGAAGCTGCGTTTCGCAAGCTTTCTAGACCAT
BO14493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 408 | CG4759-PD | 1..405 | 17..421 | 2025 | 100 | Plus |
RpL27-RC | 408 | CG4759-PC | 1..405 | 17..421 | 2025 | 100 | Plus |
RpL27-RB | 408 | CG4759-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-RD | 987 | CG4759-RD | 108..512 | 17..421 | 2025 | 100 | Plus |
RpL27-RC | 544 | CG4759-RC | 49..453 | 17..421 | 2025 | 100 | Plus |
RpL27-RB | 603 | CG4759-RB | 108..512 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25684098..25684502 | 421..17 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:59:26 has no hits.
BO14493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:04 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:37 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 82..492 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:14 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..512 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:05 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RA | 82..492 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:15 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27-RB | 108..512 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:15 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25684096..25684502 | 17..423 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:14 Download gff for
BO14493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21509818..21510224 | 17..423 | 99 | | Minus |
BO14493.pep Sequence
Translation from 16 to 439
> BO14493.pep
MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYP
RKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDL
KDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRFASFLDH
BO14493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27-PD | 135 | CG4759-PD | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PC | 135 | CG4759-PC | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PB | 135 | CG4759-PB | 1..135 | 1..135 | 710 | 100 | Plus |
RpL27-PA | 135 | CG4759-PA | 1..135 | 1..135 | 710 | 100 | Plus |