Clone Sequence Records
BO14494.3prime Sequence
739 bp (697 high quality bases) assembled on 2006-05-29
> BO14494.3prime
ATGGTCTAGAAAGCTTGCACTGCAACAGGAGGCTGGTGTAGGATCCCGAC
CAGATCGCTTGGTGATTGACAGCCGGGTGAACTCTTCGGCGGTGGTGGGG
TGGATTCCCACCGTGTTCAGAAGCGTCTTTACGGTCAAGCCGGTCTTGAG
GGCTGCGGCGAAGCCCTGGATGACCTCGCCGGCGACTGGGCCGATGTAGT
GCAGGCCAAGGATCTTCTGGTCCCCGGACACTTCGGCTACGGCCTTGAGG
TAGCAGTGACGCACGCTCTTCTGGGGAATAAAGAACTCTGTGGGCTTGTA
GTAGCCGTGGAAGACCTCGATGTTGTCAGCACCACGCAGTTCGATGGCCG
TTTCCTCCGACATGCCGACGCAACTGTATTCTAGCGGAGTAAAAACTGTG
GTTGCCACGTCGGCATAGTCCATCAGCTGCGTGGAGCCGGCGAACAGACG
CCTGGCAAGCAGGCGGCCCGACAGGATGGCCACCGGCGTTAGCTCTGGTC
GACCATATATGATGTCCCCAACTGCAAATATATGAGGCACGCTGGTGGCC
TCCGCGGCGTCTACCACAATCTTGTCGTCATGAGTCTTCACTCCGGCGGC
GTCCAGGTTGAGGTCCTCGATGAGACCTTTGCGCCCAATGGCCCACAGCA
CGGTGTCGAAAACGTCGCTGCCGTCCATTTGGGTGGTTGTGTTGCGGTAC
CGAACTAGCAGCCGCCCGTCCGCCTGCCTCTCCACGGCC
BO14494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11401-PA | 1551 | Trxr-2-RA | 828..1548 | 739..19 | 3580 | 99.8 | Minus |
CG2151-PA | 1476 | Trxr-1-RA | 1171..1232 | 321..260 | 235 | 95.1 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 1222..1283 | 321..260 | 235 | 95.1 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 1486..1547 | 321..260 | 235 | 95.1 | Minus |
CG2151-PA | 1476 | Trxr-1-RA | 1375..1436 | 117..56 | 135 | 88.7 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 1426..1487 | 117..56 | 135 | 88.7 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 1690..1751 | 117..56 | 135 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 923..1643 | 739..19 | 3590 | 99.9 | Minus |
Trxr-1-RC | 2108 | CG2151-RC | 1122..1765 | 663..20 | 655 | 73.8 | Minus |
Trxr-1-RB | 2277 | CG2151-RB | 1291..1934 | 663..20 | 655 | 73.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22551148..22551868 | 739..19 | 3590 | 99.9 | Minus |
X | 23542271 | X | 8247047..8247690 | 663..20 | 640 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:11:08 has no hits.
BO14494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:42 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 828..1551 | 18..739 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:11 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 828..1551 | 18..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:25 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 923..1648 | 11..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:25 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 923..1648 | 11..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:25 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22551148..22551873 | 11..739 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:25 Download gff for
BO14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22544248..22544973 | 11..739 | 99 | | Minus |
BO14494.5prime Sequence
707 bp (705 high quality bases) assembled on 2006-05-29
> BO14494.5prime
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCC
BO14494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11401-PA | 1551 | Trxr-2-RA | 1..691 | 17..707 | 3455 | 100 | Plus |
CG2151-PC | 1527 | Trxr-1-RC | 191..311 | 222..342 | 330 | 90.9 | Plus |
CG2151-PA | 1476 | Trxr-1-RA | 140..260 | 222..342 | 330 | 90.9 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 455..575 | 222..342 | 330 | 90.9 | Plus |
CG32715-PA | 183 | CG32715-RA | 5..98 | 315..222 | 295 | 92.5 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 355..426 | 389..460 | 235 | 93 | Plus |
CG2151-PA | 1476 | Trxr-1-RA | 304..375 | 389..460 | 235 | 93 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 619..690 | 389..460 | 235 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 83..786 | 5..707 | 3465 | 99.6 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 106..460 | 775 | 81.8 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 483..837 | 106..460 | 775 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22550321..22551011 | 17..707 | 3455 | 100 | Plus |
X | 23542271 | X | 8246098..8246439 | 106..447 | 680 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:36:16 has no hits.
BO14494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:43 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:12 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11401-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:20 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 79..786 | 1..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:15 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 79..786 | 1..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:15 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22550304..22551011 | 1..707 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:20 Download gff for
BO14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22543404..22544111 | 1..707 | 99 | | Plus |
BO14494.complete Sequence
1582 bp assembled on 2008-08-14
GenBank Submission: FJ633154
> BO14494.complete
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCAT
TGTGCTGCGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCATGA
TGACTGAGCGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTG
GAGAGGCAGGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCAC
CCAAATGGACGGCAGCGACGTTTTCGACACCGTGCTGTGGGCCATTGGGC
GCAAAGGTCTCATCGAGGACCTCAACCTGGACGCCGCCGGAGTGAAGACT
CATGACGACAAGATTGTGGTAGACGCCGCGGAGGCCACCAGCGTGCCTCA
TATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACGCCGG
TGGCCATCCTGTCGGGCCGCCTGCTTGCCAGGCGTCTGTTCGCCGGCTCC
ACGCAGCTGATGGACTATGCCGACGTGGCAACCACAGTTTTTACTCCGCT
AGAATACAGTTGCGTCGGCATGTCGGAGGAAACGGCCATCGAACTGCGTG
GTGCTGACAACATCGAGGTCTTCCACGGCTACTACAAGCCCACAGAGTTC
TTTATTCCCCAGAAGAGCGTGCGTCACTGCTACCTCAAGGCCGTAGCCGA
AGTGTCCGGGGACCAGAAGATCCTTGGCCTGCACTACATCGGCCCAGTCG
CCGGCGAGGTCATCCAGGGCTTCGCCGCAGCCCTCAAGACCGGCTTGACC
GTAAAGACGCTTCTGAACACGGTGGGAATCCACCCCACCACCGCCGAAGA
GTTCACCCGGCTGTCAATCACCAAGCGATCTGGTCGGGATCCTACACCAG
CCTCCTGTTGCAGTGCAAGCTTTCTAGACCAT
BO14494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1551 | CG11401-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Trxr-1-RC | 1527 | CG2151-PC | 520..1523 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RB | 1791 | CG2151-PB | 784..1787 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RC | 1527 | CG2151-PC | 72..426 | 106..460 | 715 | 81.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-RA | 1794 | CG11401-RA | 96..1643 | 17..1564 | 7740 | 100 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 762..1765 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 931..1934 | 560..1563 | 955 | 73 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 106..460 | 715 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22550321..22551868 | 17..1564 | 7740 | 100 | Plus |
X | 23542271 | X | 8246819..8247690 | 692..1563 | 835 | 73.1 | Plus |
X | 23542271 | X | 8246098..8246439 | 106..447 | 680 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:05:53 has no hits.
BO14494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:36 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 79..1648 | 1..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:05 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1643 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:53 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1643 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:43 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-2-RA | 96..1643 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:43 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22550321..22551868 | 17..1566 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:05 Download gff for
BO14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22543421..22544968 | 17..1566 | 99 | | Plus |
BO14494.pep Sequence
Translation from 16 to 1582
> BO14494.pep
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCSASFLDH
BO14494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-2-PA | 516 | CG11401-PA | 1..516 | 1..516 | 2690 | 100 | Plus |
Trxr-1-PA | 491 | CG2151-PA | 1..491 | 24..516 | 1980 | 75.9 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 25..508 | 31..516 | 1979 | 76.8 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 113..596 | 31..516 | 1979 | 76.8 | Plus |
CG7430-PB | 504 | CG7430-PB | 36..500 | 31..507 | 377 | 27.3 | Plus |