Clone BO14494 Report

Search the DGRC for BO14494

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:144
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptTrxr-2-RA
Protein status:BO14494.pep: Imported from assembly
Sequenced Size:1582

Clone Sequence Records

BO14494.3prime Sequence

739 bp (697 high quality bases) assembled on 2006-05-29

> BO14494.3prime
ATGGTCTAGAAAGCTTGCACTGCAACAGGAGGCTGGTGTAGGATCCCGAC
CAGATCGCTTGGTGATTGACAGCCGGGTGAACTCTTCGGCGGTGGTGGGG
TGGATTCCCACCGTGTTCAGAAGCGTCTTTACGGTCAAGCCGGTCTTGAG
GGCTGCGGCGAAGCCCTGGATGACCTCGCCGGCGACTGGGCCGATGTAGT
GCAGGCCAAGGATCTTCTGGTCCCCGGACACTTCGGCTACGGCCTTGAGG
TAGCAGTGACGCACGCTCTTCTGGGGAATAAAGAACTCTGTGGGCTTGTA
GTAGCCGTGGAAGACCTCGATGTTGTCAGCACCACGCAGTTCGATGGCCG
TTTCCTCCGACATGCCGACGCAACTGTATTCTAGCGGAGTAAAAACTGTG
GTTGCCACGTCGGCATAGTCCATCAGCTGCGTGGAGCCGGCGAACAGACG
CCTGGCAAGCAGGCGGCCCGACAGGATGGCCACCGGCGTTAGCTCTGGTC
GACCATATATGATGTCCCCAACTGCAAATATATGAGGCACGCTGGTGGCC
TCCGCGGCGTCTACCACAATCTTGTCGTCATGAGTCTTCACTCCGGCGGC
GTCCAGGTTGAGGTCCTCGATGAGACCTTTGCGCCCAATGGCCCACAGCA
CGGTGTCGAAAACGTCGCTGCCGTCCATTTGGGTGGTTGTGTTGCGGTAC
CGAACTAGCAGCCGCCCGTCCGCCTGCCTCTCCACGGCC

BO14494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11401-PA 1551 Trxr-2-RA 828..1548 739..19 3580 99.8 Minus
CG2151-PA 1476 Trxr-1-RA 1171..1232 321..260 235 95.1 Minus
CG2151-PC 1527 Trxr-1-RC 1222..1283 321..260 235 95.1 Minus
CG2151-PB 1791 Trxr-1-RB 1486..1547 321..260 235 95.1 Minus
CG2151-PA 1476 Trxr-1-RA 1375..1436 117..56 135 88.7 Minus
CG2151-PC 1527 Trxr-1-RC 1426..1487 117..56 135 88.7 Minus
CG2151-PB 1791 Trxr-1-RB 1690..1751 117..56 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 923..1643 739..19 3590 99.9 Minus
Trxr-1-RC 2108 CG2151-RC 1122..1765 663..20 655 73.8 Minus
Trxr-1-RB 2277 CG2151-RB 1291..1934 663..20 655 73.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22551148..22551868 739..19 3590 99.9 Minus
X 23542271 X 8247047..8247690 663..20 640 73.3 Minus
Blast to na_te.dros performed on 2015-02-10 17:11:08 has no hits.

BO14494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:42 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 828..1551 18..739 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:11 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 828..1551 18..739 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:25 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 923..1648 11..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:25 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 923..1648 11..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:25 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22551148..22551873 11..739 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:25 Download gff for BO14494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22544248..22544973 11..739 99   Minus

BO14494.5prime Sequence

707 bp (705 high quality bases) assembled on 2006-05-29

> BO14494.5prime
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCC

BO14494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11401-PA 1551 Trxr-2-RA 1..691 17..707 3455 100 Plus
CG2151-PC 1527 Trxr-1-RC 191..311 222..342 330 90.9 Plus
CG2151-PA 1476 Trxr-1-RA 140..260 222..342 330 90.9 Plus
CG2151-PB 1791 Trxr-1-RB 455..575 222..342 330 90.9 Plus
CG32715-PA 183 CG32715-RA 5..98 315..222 295 92.5 Minus
CG2151-PC 1527 Trxr-1-RC 355..426 389..460 235 93 Plus
CG2151-PA 1476 Trxr-1-RA 304..375 389..460 235 93 Plus
CG2151-PB 1791 Trxr-1-RB 619..690 389..460 235 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 83..786 5..707 3465 99.6 Plus
Trxr-1-RC 2108 CG2151-RC 314..668 106..460 775 81.8 Plus
Trxr-1-RB 2277 CG2151-RB 483..837 106..460 775 81.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22550321..22551011 17..707 3455 100 Plus
X 23542271 X 8246098..8246439 106..447 680 81.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:36:16 has no hits.

BO14494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:43 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 1..691 17..707 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:12 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11401-PA 1..691 17..707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:20 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 79..786 1..707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:15 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 79..786 1..707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:15 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22550304..22551011 1..707 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:20 Download gff for BO14494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22543404..22544111 1..707 99   Plus

BO14494.complete Sequence

1582 bp assembled on 2008-08-14

GenBank Submission: FJ633154

> BO14494.complete
GAAGTTATCAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACAC
ACAACGCACTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGA
CCACGCTATGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATT
GGCGTGTGCCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCG
ACTACGTCAAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACC
TGCGTGAATGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCT
GCTGGGCGAGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACG
ACACGAACATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAAC
CACATCAAGTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAA
GGTGGAGTACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCG
AGTATGTGGCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTAC
GTGGTGGTAGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGC
CGTTGAACTGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGC
CGGGTCGTACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCC
TGTTTCCTTAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCAT
TGTGCTGCGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCATGA
TGACTGAGCGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTG
GAGAGGCAGGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCAC
CCAAATGGACGGCAGCGACGTTTTCGACACCGTGCTGTGGGCCATTGGGC
GCAAAGGTCTCATCGAGGACCTCAACCTGGACGCCGCCGGAGTGAAGACT
CATGACGACAAGATTGTGGTAGACGCCGCGGAGGCCACCAGCGTGCCTCA
TATATTTGCAGTTGGGGACATCATATATGGTCGACCAGAGCTAACGCCGG
TGGCCATCCTGTCGGGCCGCCTGCTTGCCAGGCGTCTGTTCGCCGGCTCC
ACGCAGCTGATGGACTATGCCGACGTGGCAACCACAGTTTTTACTCCGCT
AGAATACAGTTGCGTCGGCATGTCGGAGGAAACGGCCATCGAACTGCGTG
GTGCTGACAACATCGAGGTCTTCCACGGCTACTACAAGCCCACAGAGTTC
TTTATTCCCCAGAAGAGCGTGCGTCACTGCTACCTCAAGGCCGTAGCCGA
AGTGTCCGGGGACCAGAAGATCCTTGGCCTGCACTACATCGGCCCAGTCG
CCGGCGAGGTCATCCAGGGCTTCGCCGCAGCCCTCAAGACCGGCTTGACC
GTAAAGACGCTTCTGAACACGGTGGGAATCCACCCCACCACCGCCGAAGA
GTTCACCCGGCTGTCAATCACCAAGCGATCTGGTCGGGATCCTACACCAG
CCTCCTGTTGCAGTGCAAGCTTTCTAGACCAT

BO14494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1551 CG11401-PA 1..1548 17..1564 7740 100 Plus
Trxr-1-RC 1527 CG2151-PC 520..1523 560..1563 955 73 Plus
Trxr-1-RB 1791 CG2151-PB 784..1787 560..1563 955 73 Plus
Trxr-1-RC 1527 CG2151-PC 72..426 106..460 715 81.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-RA 1794 CG11401-RA 96..1643 17..1564 7740 100 Plus
Trxr-1-RC 2108 CG2151-RC 762..1765 560..1563 955 73 Plus
Trxr-1-RB 2277 CG2151-RB 931..1934 560..1563 955 73 Plus
Trxr-1-RC 2108 CG2151-RC 314..668 106..460 715 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22550321..22551868 17..1564 7740 100 Plus
X 23542271 X 8246819..8247690 692..1563 835 73.1 Plus
X 23542271 X 8246098..8246439 106..447 680 81.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:05:53 has no hits.

BO14494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:36 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 79..1648 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:05 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1643 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:53 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1643 17..1566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:43 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-2-RA 96..1643 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:43 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22550321..22551868 17..1566 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:05 Download gff for BO14494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22543421..22544968 17..1566 99   Plus

BO14494.pep Sequence

Translation from 16 to 1582

> BO14494.pep
MSTIKFLRSSTHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKE
AAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLLGEAV
HEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN
SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVELGI
TSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSIVLRGF
DRQMSELLAAMMTERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGS
DVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSVPHIFAVG
DIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCV
GMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQ
KILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS
ITKRSGRDPTPASCCSASFLDH

BO14494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-2-PA 516 CG11401-PA 1..516 1..516 2690 100 Plus
Trxr-1-PA 491 CG2151-PA 1..491 24..516 1980 75.9 Plus
Trxr-1-PC 508 CG2151-PC 25..508 31..516 1979 76.8 Plus
Trxr-1-PB 596 CG2151-PB 113..596 31..516 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 36..500 31..507 377 27.3 Plus