Clone Sequence Records
BO14502.3prime Sequence
852 bp (707 high quality bases) assembled on 2006-05-29
> BO14502.3prime
ATGGTCTAGAAAGCTTGCTTCAGTCTTTGGCGGGGTCTCTTCATTTGGTG
GAGCCTCCTCCTCGTCAGCTATACTTCCGACCAGGCTTCCTTGGGTTTTT
CTCTTACTAGCCTCCGCGGCATACTCACCAAATGTGAGATTTATGTCGTA
GGGAGTGCGCCGGAAGATGTTCGGAGGAGTGTAGTTGCTCTGTATGGGCC
AGAAGAGACCATCCTCGTCGGGCGAGAAGGGCACCCGGCCGTAGAGCCAG
GCGAACTCTCCCAACTCGTAGTAGAATCGTGTGGATGCCAAAACCAGTTC
GATGCGCTGGATCTCGGGCAGGTGCTTCCGGAACACCTCCACCGGCAAGT
GTTCGCTTAGGATTGAGCTTTTGGACTTTGACTTTGGCATATCGTCCTCC
ATGTCGCTTTCTCGCGTGGAGATCCCGTCCGGATCCACTTGCTGACCCTC
CGAGAGCAGCCGGCAGATGGTCAGCAGCTTATCCTTGATGATCAGATGCT
GTTTTCCCATGAGATACTCATCGGTGGGCGTGGAGGTGGGGAACTTCTCG
TTCAGAAAGACGGAAGGGATGCGGCGAAACATAAGTTCTTTTGTATAGAG
CTCCTGCACGTGATCCTCGATCTGGAAGACGCGATTCATCAACCAGAAAG
TCTCACAGCAATCGGCCAGGGCCCGTGTGAAGCATCCGATCATGTCCTCG
GAGGACTCCAGCATCAGCATGCTGTATTCGCCCATGTGGAGAAACAATCC
GCACATGGGATCCGGCGTGATGGCCAGCGCCTTGCACTGCTTATGCAGCT
CCTGCAGGCGCTCGCTGAAGATGGCAAAGAAGTCCTTGGGCTGAACGGGT
GC
BO14502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 1341 | CG15878-RA | 505..1334 | 852..23 | 3975 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 620..1453 | 852..19 | 4050 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211051..2211884 | 19..852 | 4050 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:01:04 has no hits.
BO14502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:50 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 505..1341 | 15..852 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:22 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 505..1341 | 15..852 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:50 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 620..1457 | 14..852 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:46 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 620..1457 | 14..852 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:46 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211047..2211884 | 14..852 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:50 Download gff for
BO14502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211047..2211884 | 14..852 | 98 | | Plus |
BO14502.5prime Sequence
829 bp (781 high quality bases) assembled on 2006-05-29
> BO14502.5prime
GAAGTTATCAGTCGACATGTCCTTTCACCGGATCAATGTCAAACAAGCTT
CCATAGCCGCCCGCCAGCGGCAGTCGCGGACGACCAGGATGACCCGGCAC
ACCATTTTCAATTTGAAGAGACCCATTACCTTCCAGGTGCGCAAATCGCT
GGTGGAGTACGTGGACATGGAGCTAGCGGACATGGACACCTCCGTGTTCT
ATCAGCGCATCTTTATCCTGGCCAAGAACTGCCACTTGACGCCAGTTGTG
TCCAACGAGGAGTTGCTCGCCGACGCGGTGGTGGAACAGGCTGAGCCTGA
ACCAGATGAAGCGGCGCCCATACAGTTCATGGAGGATGTGATCTTCGACA
ACACTGAAACGGAATCGCCCATGAACACGACGGCGGATCCAGCGCCCATT
CCTGCGCCGGAAGAAGGTGCGACGGAAACTGCAGAAGTAGTTACCCACAT
GTTCCGTTTCAGTGAAGACGATCCAGAAGAAGACTTTGTCGAAGAGGAGG
AACTGGAAATGGACACCCAAGCACCCGATCAGCCCAAGGACTTCTTTGCC
ATCTTCAGCGAGCGCCTGCAGGAGCTGCATAAGCAGTGCAAGGCGCTGGC
CATCACGCCGGATCCCATGTGCGGATTGTTTCTCCACATGGGCGAATACA
GCATGCTGATGCTGGAGTCCTCCGAGGACATGATCGGATGCTTCACACGG
GCCCTGGCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCA
GATCGAGGATCACGTGCAGGAGCTCTATACAAAAGAACTTATGTTTCGCC
GCATCCCTTCCGTCTTTCTGAACGAGAAG
BO14502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 1341 | CG15878-RA | 1..813 | 17..829 | 3990 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 116..928 | 17..829 | 4020 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211576..2212388 | 829..17 | 4020 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:35:20 has no hits.
BO14502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:51 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:23 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:09 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..928 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:06 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..928 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:06 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211576..2212388 | 17..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:09 Download gff for
BO14502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211576..2212388 | 17..829 | 99 | | Minus |
BO14502.complete Sequence
1372 bp assembled on 2006-10-11
GenBank Submission: FJ633155
> BO14502.complete
GAAGTTATCAGTCGACATGTCCTTTCACCGGATCAATGTCAAACAAGCTT
CCATAGCCGCCCGCCAGCGGCAGTCGCGGACGACCAGGATGACCCGGCAC
ACCATTTTCAATTTGAAGAGACCCATTACCTTCCAGGTGCGCAAATCGCT
GGTGGAGTACGTGGACATGGAGCTAGCGGACATGGACACCTCCGTGTTCT
ATCAGCGCATCTTTATCCTGGCCAAGAACTGCCACTTGACGCCAGTTGTG
TCCAACGAGGAGTTGCTCGCCGACGCGGTGGTGGAACAGGCTGAGCCTGA
ACCAGATGAAGCGGCGCCCATACAGTTCATGGAGGATGTGATCTTCGACA
ACACTGAAACGGAATCGCCCATGAACACGACGGCGGATCCAGCGCCCATT
CCTGCGCCGGAAGAAGGTGCGACGGAAACTGCAGAAGTAGTTACCCACAT
GTTCCGTTTCAGTGAAGACGATCCAGAAGAAGACTTTGTCGAAGAGGAGG
AACTGGAAATGGACACCCAAGCACCCGATCAGCCCAAGGACTTCTTTGCC
ATCTTCAGCGAGCGCCTGCAGGAGCTGCATAAGCAGTGCAAGGCGCTGGC
CATCACGCCGGATCCCATGTGCGGATTGTTTCTCCACATGGGCGAATACA
GCATGCTGATGCTGGAGTCCTCCGAGGACATGATCGGATGCTTCACACGG
GCCCTGGCCGATTGCTGTGAGACTTTCTGGTTGATGAATCGCGTCTTCCA
GATCGAGGATCACGTGCAGGAGCTCTATACAAAAGAACTTATGTTTCGCC
GCATCCCTTCCGTCTTTCTGAACGAGAAGTTCCCCACCTCCACGCCCACC
GATGAGTATCTCATGGGAAAACAGCATCTGATCATCAAGGATAAGCTGCT
GACCATCTGCCGGCTGCTCTCGGAGGGTCAGCAAGTGGATCCGGACGGGA
TCTCCACGCGAGAAAGCGACATGGAGGACGATATGCCAAAGTCAAAGTCC
AAAAGCTCAATCCTAAGCGAACACTTGCCGGTGGAGGTGTTCCGGAAGCA
CCTGCCCGAGATCCAGCGCATCGAACTGGTTTTGGCATCCACACGATTCT
ACTACGAGTTGGGAGAGTTCGCCTGGCTCTACGGCCGGGTGCCCTTCTCG
CCCGACGAGGATGGTCTCTTCTGGCCCATACAGAGCAACTACACTCCTCC
GAACATCTTCCGGCGCACTCCCTACGACATAAATCTCACATTTGGTGAGT
ATGCCGCGGAGGCTAGTAAGAGAAAAACCCAAGGAAGCCTGGTCGGAAGT
ATAGCTGACGAGGAGGAGGCTCCACCAAATGAAGAGACCCCGCCAAAGAC
TGAAGCAAGCTTTCTAGACCAT
BO14502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1341 | CG15878-PA | 1..1338 | 17..1354 | 6540 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-RA | 1631 | CG15878-RA | 116..1453 | 17..1354 | 6540 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2211051..2212388 | 1354..17 | 6540 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:50:46 has no hits.
BO14502.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:31 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:15 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1457 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:13 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1453 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:31 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1457 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:45 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15878-RA | 116..1453 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:45 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2211049..2212388 | 17..1356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:13 Download gff for
BO14502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2211049..2212388 | 17..1356 | 99 | | Minus |
BO14502.pep Sequence
Translation from 16 to 1372
> BO14502.pep
MSFHRINVKQASIAARQRQSRTTRMTRHTIFNLKRPITFQVRKSLVEYVD
MELADMDTSVFYQRIFILAKNCHLTPVVSNEELLADAVVEQAEPEPDEAA
PIQFMEDVIFDNTETESPMNTTADPAPIPAPEEGATETAEVVTHMFRFSE
DDPEEDFVEEEELEMDTQAPDQPKDFFAIFSERLQELHKQCKALAITPDP
MCGLFLHMGEYSMLMLESSEDMIGCFTRALADCCETFWLMNRVFQIEDHV
QELYTKELMFRRIPSVFLNEKFPTSTPTDEYLMGKQHLIIKDKLLTICRL
LSEGQQVDPDGISTRESDMEDDMPKSKSKSSILSEHLPVEVFRKHLPEIQ
RIELVLASTRFYYELGEFAWLYGRVPFSPDEDGLFWPIQSNYTPPNIFRR
TPYDINLTFGEYAAEASKRKTQGSLVGSIADEEEAPPNEETPPKTEASFL
DH
BO14502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15878-PA | 446 | CG15878-PA | 1..446 | 1..446 | 2334 | 100 | Plus |
