Clone BO14504 Report

Search the DGRC for BO14504

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG30148-RA
Protein status:BO14504.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO14504.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-29

> BO14504.3prime
ATGGTCTAGAAAGCTTGCTTTATGTGGATTGTCGTAACTGGTGACCACAT
GAGCACCTTCATCCTGTCTATAGCCCAGCCCGTTGTAAATGACGTAGGTC
CAAAAGTACAGGGTATCTCCATGGTTGAGCTTTGTCTTGTGATCTCGGAA
TGTCCAACGTCCCCGCTTGGCTTTCGGAATATCCCTGGACCATTGTCCCG
CCTCCAGGCCGTCGAACTCCTCGTTTAGCTTGCCATGGAAGGCAAACAGT
GAAATACCCTCCGCATCCGGAATGGAGACCTCGAATCCCCGGGGATAGAA
CACGCGCACCTGTGCCTCAGGTGCCTCGTAGGCGTGGCCAAAGGCAATCG
CCAACACCAGGAGCAGCAGGCACAGCGGAAGTGTAGGCATGTCGACTGAT
AACT

BO14504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PA 375 CG30148-RA 1..372 390..19 1835 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..427 390..19 1845 99.7 Minus
CG30148-RA 618 CG30148-RA 56..427 390..19 1845 99.7 Minus
GNBP3-RA 1531 CG5008-RA 111..341 300..70 315 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547232..20547603 19..390 1845 99.7 Plus
3L 28110227 3L 8955131..8955361 300..70 315 75.8 Minus
Blast to na_te.dros performed on 2015-02-10 22:34:53 has no hits.

BO14504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:53 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:27 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:47:43 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 19..402 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:58 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 19..402 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:58 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20547232..20547599 19..386 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:47:43 Download gff for BO14504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434737..16435104 19..386 99 -> Plus

BO14504.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-29

> BO14504.5prime
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAAGCAAGCTTTCTA
GACC

BO14504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PA 375 CG30148-RA 1..372 17..388 1835 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..427 17..388 1845 99.7 Plus
CG30148-RA 618 CG30148-RA 56..427 17..388 1845 99.7 Plus
GNBP3-RA 1531 CG5008-RA 111..341 107..337 315 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547232..20547603 388..17 1845 99.7 Minus
3L 28110227 3L 8955131..8955361 107..337 315 75.8 Plus
Blast to na_te.dros performed on 2015-02-04 02:09:45 has no hits.

BO14504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:54 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:29 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:10 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 5..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:25 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 5..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:25 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20547232..20547599 21..388 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:10 Download gff for BO14504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434737..16435104 21..388 99 -> Minus

BO14504.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ633156

> BO14504.complete
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAAGCAAGCTTTCTA
GACCAT

BO14504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 375 CG30148-PB 1..372 17..388 1845 99.7 Plus
CG30148-RA 375 CG30148-PA 1..372 17..388 1845 99.7 Plus
GNBP3-RA 1473 CG5008-PA 106..336 107..337 315 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..427 17..388 1845 99.7 Plus
CG30148-RA 618 CG30148-RA 56..427 17..388 1845 99.7 Plus
GNBP3-RA 1531 CG5008-RA 111..341 107..337 315 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547232..20547603 388..17 1845 99.7 Minus
3L 28110227 3L 8955131..8955361 107..337 315 75.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:23:28 has no hits.

BO14504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:59 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:41 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 67..450 5..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:27 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 56..427 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:59 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 67..450 5..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:31 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 56..427 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:31 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20547230..20547603 17..390 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:27 Download gff for BO14504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434735..16435108 17..390 99   Minus

BO14504.pep Sequence

Translation from 16 to 406

> BO14504.pep
MPTLPLCLLLLVLAIAFGHAYEAPEAQVRVFYPRGFEVSIPDAEGISLFA
FHGKLNEEFDGLEAGQWSRDIPKAKRGRWTFRDHKTKLNHGDTLYFWTYV
IYNGLGYRQDEGAHVVTSYDNPHKASFLDH

BO14504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-PB 124 CG30148-PB 1..124 1..124 679 100 Plus
CG30148-PA 124 CG30148-PA 1..124 1..124 679 100 Plus
GNBP3-PA 490 CG5008-PA 13..132 7..123 425 66.1 Plus
GNBP-like3-PA 152 CG13422-PA 7..124 4..121 284 44.1 Plus
CG12780-PA 100 CG12780-PA 4..93 21..109 214 50 Plus