Clone Sequence Records
BO14504.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-29
> BO14504.3prime
ATGGTCTAGAAAGCTTGCTTTATGTGGATTGTCGTAACTGGTGACCACAT
GAGCACCTTCATCCTGTCTATAGCCCAGCCCGTTGTAAATGACGTAGGTC
CAAAAGTACAGGGTATCTCCATGGTTGAGCTTTGTCTTGTGATCTCGGAA
TGTCCAACGTCCCCGCTTGGCTTTCGGAATATCCCTGGACCATTGTCCCG
CCTCCAGGCCGTCGAACTCCTCGTTTAGCTTGCCATGGAAGGCAAACAGT
GAAATACCCTCCGCATCCGGAATGGAGACCTCGAATCCCCGGGGATAGAA
CACGCGCACCTGTGCCTCAGGTGCCTCGTAGGCGTGGCCAAAGGCAATCG
CCAACACCAGGAGCAGCAGGCACAGCGGAAGTGTAGGCATGTCGACTGAT
AACT
BO14504.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-PA | 375 | CG30148-RA | 1..372 | 390..19 | 1835 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-RB | 1064 | CG30148-RB | 56..427 | 390..19 | 1845 | 99.7 | Minus |
CG30148-RA | 618 | CG30148-RA | 56..427 | 390..19 | 1845 | 99.7 | Minus |
GNBP3-RA | 1531 | CG5008-RA | 111..341 | 300..70 | 315 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20547232..20547603 | 19..390 | 1845 | 99.7 | Plus |
3L | 28110227 | 3L | 8955131..8955361 | 300..70 | 315 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:34:53 has no hits.
BO14504.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:53 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:27 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:47:43 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 44..427 | 19..402 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:58 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 44..427 | 19..402 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:58 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20547232..20547599 | 19..386 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:47:43 Download gff for
BO14504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16434737..16435104 | 19..386 | 99 | -> | Plus |
BO14504.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-29
> BO14504.5prime
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAAGCAAGCTTTCTA
GACC
BO14504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-PA | 375 | CG30148-RA | 1..372 | 17..388 | 1835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-RB | 1064 | CG30148-RB | 56..427 | 17..388 | 1845 | 99.7 | Plus |
CG30148-RA | 618 | CG30148-RA | 56..427 | 17..388 | 1845 | 99.7 | Plus |
GNBP3-RA | 1531 | CG5008-RA | 111..341 | 107..337 | 315 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20547232..20547603 | 388..17 | 1845 | 99.7 | Minus |
3L | 28110227 | 3L | 8955131..8955361 | 107..337 | 315 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:09:45 has no hits.
BO14504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:54 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:29 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:10 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 44..427 | 5..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:25 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 44..427 | 5..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:25 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20547232..20547599 | 21..388 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:10 Download gff for
BO14504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16434737..16435104 | 21..388 | 99 | -> | Minus |
BO14504.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ633156
> BO14504.complete
GAAGTTATCAGTCGACATGCCTACACTTCCGCTGTGCCTGCTGCTCCTGG
TGTTGGCGATTGCCTTTGGCCACGCCTACGAGGCACCTGAGGCACAGGTG
CGCGTGTTCTATCCCCGGGGATTCGAGGTCTCCATTCCGGATGCGGAGGG
TATTTCACTGTTTGCCTTCCATGGCAAGCTAAACGAGGAGTTCGACGGCC
TGGAGGCGGGACAATGGTCCAGGGATATTCCGAAAGCCAAGCGGGGACGT
TGGACATTCCGAGATCACAAGACAAAGCTCAACCATGGAGATACCCTGTA
CTTTTGGACCTACGTCATTTACAACGGGCTGGGCTATAGACAGGATGAAG
GTGCTCATGTGGTCACCAGTTACGACAATCCACATAAAGCAAGCTTTCTA
GACCAT
BO14504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-RB | 375 | CG30148-PB | 1..372 | 17..388 | 1845 | 99.7 | Plus |
CG30148-RA | 375 | CG30148-PA | 1..372 | 17..388 | 1845 | 99.7 | Plus |
GNBP3-RA | 1473 | CG5008-PA | 106..336 | 107..337 | 315 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-RB | 1064 | CG30148-RB | 56..427 | 17..388 | 1845 | 99.7 | Plus |
CG30148-RA | 618 | CG30148-RA | 56..427 | 17..388 | 1845 | 99.7 | Plus |
GNBP3-RA | 1531 | CG5008-RA | 111..341 | 107..337 | 315 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20547232..20547603 | 388..17 | 1845 | 99.7 | Minus |
3L | 28110227 | 3L | 8955131..8955361 | 107..337 | 315 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:23:28 has no hits.
BO14504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:59 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:41 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 67..450 | 5..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:27 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 56..427 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:59 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 67..450 | 5..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:31 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30148-RA | 56..427 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:31 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20547230..20547603 | 17..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:27 Download gff for
BO14504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16434735..16435108 | 17..390 | 99 | | Minus |
BO14504.pep Sequence
Translation from 16 to 406
> BO14504.pep
MPTLPLCLLLLVLAIAFGHAYEAPEAQVRVFYPRGFEVSIPDAEGISLFA
FHGKLNEEFDGLEAGQWSRDIPKAKRGRWTFRDHKTKLNHGDTLYFWTYV
IYNGLGYRQDEGAHVVTSYDNPHKASFLDH
BO14504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30148-PB | 124 | CG30148-PB | 1..124 | 1..124 | 679 | 100 | Plus |
CG30148-PA | 124 | CG30148-PA | 1..124 | 1..124 | 679 | 100 | Plus |
GNBP3-PA | 490 | CG5008-PA | 13..132 | 7..123 | 425 | 66.1 | Plus |
GNBP-like3-PA | 152 | CG13422-PA | 7..124 | 4..121 | 284 | 44.1 | Plus |
CG12780-PA | 100 | CG12780-PA | 4..93 | 21..109 | 214 | 50 | Plus |