Clone Sequence Records
BO14506.3prime Sequence
915 bp (851 high quality bases) assembled on 2006-05-29
> BO14506.3prime
ATGGTCTAGAAAGCTTGCGTCTAAATAATTAACCTTCCGATGATCTACAG
CCGACGACTGTCTTCTGCTTTGGATGCACTTTCGTAGCTGGAACCCGATG
ACAATTAGGCAAAGAATGCCAGCACTCAGATAGCTATTGAAGACAAACTG
CTGTGGCAGCATTTTGCACTTGGAAACCACATAGTCATCGGGGGTTATAG
TGGCCAGCATAAAGCTGGGATTAACTTTGTTTCGCCAGCTGAATGAGGCC
ACCGTGTACTCATCGATGCCCAGTCGATTTACACTGTGACAGAAGTGATG
TGAATGACCGGCGAATGCCAGCCTTGGCTTAAGAAGCTCTCCCAGCATAT
CCGTGGCATCCTTGGAGAGCACATGAAACCGCTCTCGGAACGCCTCGATG
TACGGAGCATCGTGCTCCTCGCACATGGTATCCGAAATGCGGTAGGTGGG
AAAGTGCTGCAATAGAATTGGCTGGCTGTACGGGTGCCGCCTGGTGCGAG
CGCACTCCGCCTCTAGTGGATACTTCATGCAGTACAAAGTCCGCGAAATG
TTTTTCAACTGATCCTCGGCCTGGGTGCAAAACATGCAACCATCACCTTC
CATAGCCATCGAATTTATCACCACAAAATGGATTTGTTTAATGGTGTACA
AATTGACCGAGGAGTTGTTCAGATAACTCTCAAAACGCGACATAAAGAAG
GGATGCATTTTGTAATGGAAGCCCACGTCATGATTTCCCGCGACACTGAT
GAGCGGAATTCCCGGTGGTAGGTGGAACATCTTCAGGTAGCGCCACACAT
ATTCCTGAAACTGCTTGTCGCTGACCATGTCGCCCTCGTCGAACAAATCG
CCCAAGACGAAGACCACGTCGGGCTGGAACAGACGTGATGCCGCCTGAAA
GGCCCGCGTCATGTG
BO14506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8455-PB | 1113 | CG8455-RB | 214..1110 | 915..19 | 4410 | 99.6 | Minus |
CG8455-PA | 1104 | CG8455-RA | 214..1103 | 915..26 | 4375 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1500 | CG8455-RB | 304..1200 | 915..19 | 4440 | 99.7 | Minus |
PGAP5-RC | 1566 | CG8455-RC | 375..1264 | 915..26 | 4405 | 99.7 | Minus |
PGAP5-RA | 1565 | CG8455-RA | 304..1193 | 915..26 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199529..8200034 | 709..204 | 2500 | 99.6 | Minus |
2L | 23513712 | 2L | 8199256..8199461 | 915..710 | 1015 | 99.5 | Minus |
2L | 23513712 | 2L | 8200101..8200280 | 205..26 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:50:16 has no hits.
BO14506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:57 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PB | 214..1113 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:33 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PB | 214..1113 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:38 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 304..1200 | 19..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:25 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 304..1200 | 19..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:25 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8199256..8199461 | 710..915 | 99 | -> | Minus |
2L | 8199529..8200033 | 205..709 | 99 | -> | Minus |
2L | 8200102..8200280 | 26..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:38 Download gff for
BO14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199256..8199461 | 710..915 | 99 | -> | Minus |
arm_2L | 8199529..8200033 | 205..709 | 99 | -> | Minus |
arm_2L | 8200102..8200280 | 26..204 | 100 | | Minus |
BO14506.5prime Sequence
816 bp (801 high quality bases) assembled on 2006-05-29
> BO14506.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACAGCCAGCCAATTCTATTGCAGCACTTTCCCACC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGTTCCGAGAGCGGTTTCATGTGCTCTCCAAGGATGCCACGGATATGC
TGGGAGAGCTTCTTAA
BO14506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8455-PA | 1104 | CG8455-RA | 1..800 | 17..816 | 3925 | 99.6 | Plus |
CG8455-PB | 1113 | CG8455-RB | 1..800 | 17..816 | 3925 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RC | 1566 | CG8455-RC | 162..961 | 17..816 | 3955 | 99.6 | Plus |
PGAP5-RB | 1500 | CG8455-RB | 91..890 | 17..816 | 3955 | 99.6 | Plus |
PGAP5-RA | 1565 | CG8455-RA | 91..890 | 17..816 | 3955 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199043..8199461 | 17..435 | 2080 | 99.8 | Plus |
2L | 23513712 | 2L | 8199529..8199909 | 436..816 | 1875 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:59:22 has no hits.
BO14506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:29:58 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:35 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-PB | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:51 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RA | 83..890 | 7..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:49 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RA | 83..890 | 7..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:49 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8199529..8199909 | 436..816 | 99 | | Plus |
2L | 8199035..8199461 | 7..435 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:51 Download gff for
BO14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199035..8199461 | 7..435 | 98 | -> | Plus |
arm_2L | 8199529..8199909 | 436..816 | 99 | | Plus |
BO14506.complete Sequence
1144 bp assembled on 2006-10-11
GenBank Submission: FJ633157
> BO14506.complete
GAAGTTATCAGTCGACATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGC
TGTGCGCCCTGATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAA
AAGTGCAAGTGGCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCT
TAGGGCAATGATTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTC
ACTGGCTGGACAAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAG
GCGGCATCACGTCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTT
GTTCGACGAGGGCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGT
GGCGCTACCTGAAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGT
GTCGCGGGAAATCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTT
TATGTCGCGTTTTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACA
CCATTAAACAAATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGT
GATGGTTGCATGTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTC
GCGGACTTTGTACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCA
CCAGGCGGCACCCGTACAGCCAGCCAATTCTATTGCAGCACTTTCCCACC
TACCGCATTTCGGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGA
GGCGTTCCGAGAGCGGTTTCATGTGCTCTCCAAGGATGCCACGGATATGC
TGGGAGAGCTTCTTAAGCCAAGGCTGGCATTCGCCGGTCATTCACATCAC
TTCTGTCACAGTGTAAATCGACTGGGCATCGATGAGTACACGGTGGCCTC
ATTCAGCTGGCGAAACAAAGTTAATCCCAGCTTTATGCTGGCCACTATAA
CCCCCGATGACTATGTGGTTTCCAAGTGCAAAATGCTGCCACAGCAGTTT
GTCTTCAATAGCTATCTGAGTGCTGGCATTCTTTGCCTAATTGTCATCGG
GTTCCAGCTACGAAAGTGCATCCAAAGCAGAAGACAGTCGTCGGCTGTAG
ATCATCGGAAGGTTAATTATTTAGACGCAAGCTTTCTAGACCAT
BO14506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1113 | CG8455-PB | 1..1110 | 17..1126 | 5505 | 99.7 | Plus |
PGAP5-RC | 1104 | CG8455-PC | 1..1103 | 17..1119 | 5470 | 99.7 | Plus |
PGAP5-RA | 1104 | CG8455-PA | 1..1103 | 17..1119 | 5470 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-RB | 1500 | CG8455-RB | 91..1200 | 17..1126 | 5505 | 99.7 | Plus |
PGAP5-RC | 1566 | CG8455-RC | 162..1264 | 17..1119 | 5470 | 99.7 | Plus |
PGAP5-RA | 1565 | CG8455-RA | 91..1193 | 17..1119 | 5470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8199529..8200034 | 436..941 | 2500 | 99.6 | Plus |
2L | 23513712 | 2L | 8199043..8199461 | 17..435 | 2080 | 99.8 | Plus |
2L | 23513712 | 2L | 8200101..8200280 | 940..1119 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:49 has no hits.
BO14506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:33 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 1..1113 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:16 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 77..1194 | 7..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:10 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 91..1200 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:36 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8455-RB | 77..1194 | 7..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:39 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGAP5-RB | 91..1200 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:39 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8199043..8199461 | 17..435 | 99 | -> | Plus |
2L | 8199529..8200033 | 436..940 | 99 | -> | Plus |
2L | 8200102..8200280 | 941..1119 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:10 Download gff for
BO14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8199043..8199461 | 17..435 | 99 | -> | Plus |
arm_2L | 8199529..8200033 | 436..940 | 99 | -> | Plus |
arm_2L | 8200102..8200280 | 941..1119 | 100 | | Plus |
BO14506.pep Sequence
Translation from 16 to 1144
> BO14506.pep
MRFLYACFVIVLCALIFCEYVADFVVLQKCKWPEIKRKKYVDDPLRAMIL
ADPHLLGPHRGHWLDKLYREWHMTRAFQAASRLFQPDVVFVLGDLFDEGD
MVSDKQFQEYVWRYLKMFHLPPGIPLISVAGNHDVGFHYKMHPFFMSRFE
SYLNNSSVNLYTIKQIHFVVINSMAMEGDGCMFCTQAEDQLKNISRTLYC
MKYPLEAECARTRRHPYSQPILLQHFPTYRISDTMCEEHDAPYIEAFRER
FHVLSKDATDMLGELLKPRLAFAGHSHHFCHSVNRLGIDEYTVASFSWRN
KVNPSFMLATITPDDYVVSKCKMLPQQFVFNSYLSAGILCLIVIGFQLRK
CIQSRRQSSAVDHRKVNYLDASFLDH
BO14506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGAP5-PB | 370 | CG8455-PB | 1..370 | 1..370 | 2005 | 100 | Plus |
PGAP5-PC | 367 | CG8455-PC | 1..367 | 1..367 | 1988 | 100 | Plus |
PGAP5-PA | 367 | CG8455-PA | 1..367 | 1..367 | 1988 | 100 | Plus |