Clone BO14508 Report

Search the DGRC for BO14508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG13110-RA
Protein status:BO14508.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO14508.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-29

> BO14508.3prime
ATGGTCTAGAAAGCTTGCTCGCTTGAAGCTTAGGCTCTCAGCTGGCGAAC
AAAAGGCTTTAATGTGATCGCAGTCCCGTCTACCCAGTGCCATATCCGAG
TGATAGTCGATCGGATAGACGATGGGCTGGCGATCAATACGCCACAAGGT
CGGCTCAGAAAGGACCTCAACGTCGGTATCCAACTTAACGTCGCACTTGC
CCGCATACGAGGTGAACCTTATCGGCTTGTGGACTCGATTATAGGGGTCT
TTGAAATAATCCCTGTAGTCCTGGCACTCCAAGTAGAACCTATCAACTCC
CCGGACTGCGGCGTAGTCCAACACTTTCAGTCCAGGCTTATCGCAATTGA
AGATGGAAAGGCGGTGTATCCGGCTACTCTTGGACACATTCCACATGTCC
ACCTCTGGAATGAGCATGTCGACTGATAACT

BO14508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 402 CG13110-RA 1..399 417..19 1895 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..477 417..19 1935 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350946 417..19 1935 99 Minus
Blast to na_te.dros performed on 2015-02-11 09:46:22 has no hits.

BO14508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:01 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 18..417 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:39 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 18..417 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:15 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..483 11..417 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:36 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..483 11..417 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:36 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350952 11..417 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:15 Download gff for BO14508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350952 11..417 98   Minus

BO14508.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-29

> BO14508.5prime
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGAGCAAGCTTTCTAGACC

BO14508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 402 CG13110-RA 1..399 17..415 1895 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..477 17..415 1935 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350946 17..415 1935 99 Plus
Blast to na_te.dros performed on 2015-02-11 16:07:31 has no hits.

BO14508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:02 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 17..416 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:41 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-PA 1..402 17..416 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:59:09 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..483 17..423 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:31 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..483 17..423 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:31 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350952 17..423 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:59:09 Download gff for BO14508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350952 17..423 98   Plus

BO14508.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ633159

> BO14508.complete
GAAGTTATCAGTCGACATGCTCATTCCAGAGGTGGACATGTGGAATGTGT
CCAAGAGTAGCCGGATACACCGCCTTTCCATCTTCAATTGCGATAAGCCT
GGACTGAAAGTGTTGGACTACGCCGCAGTCCGGGGAGTTGATAGGTTCTA
CTTGGAGTGCCAGGACTACAGGGATTATTTCAAAGACCCCTATAATCGAG
TCCACAAGCCGATAAGGTTCACCTCGTATGCGGGCAAGTGCGACGTTAAG
TTGGATACCGACGTTGAGGTCCTTTCTGAGCCGACCTTGTGGCGTATTGA
TCGCCAGCCCATCGTCTATCCGATCGACTATCACTCGGATATGGCACTGG
GTAGACGGGACTGCGATCACATTAAAGCCTTTTGTTCGCCAGCTGAGAGC
CTAAGCTTCAAGCGAGCAAGCTTTCTAGACCAT

BO14508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 402 CG13110-PA 1..399 17..415 1935 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-RA 527 CG13110-RA 79..477 17..415 1935 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9350548..9350946 17..415 1935 99 Plus
Blast to na_te.dros performed on 2014-11-27 23:57:58 has no hits.

BO14508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:13 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 1..402 17..416 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:43 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 72..476 17..423 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:32 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..477 17..417 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:13 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 72..476 17..423 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:49 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
CG13110-RA 79..477 17..417 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:49 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9350548..9350946 17..417 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:32 Download gff for BO14508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9350548..9350946 17..417 98   Plus

BO14508.pep Sequence

Translation from 16 to 433

> BO14508.pep
MLIPEVDMWNVSKSSRIHRLSIFNCDKPGLKVLDYAAVRGVDRFYLECQD
YRDYFKDPYNRVHKPIRFTSYAGKCDVKLDTDVEVLSEPTLWRIDRQPIV
YPIDYHSDMALGRRDCDHIKAFCSPAESLSFKRASFLDH

BO14508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13110-PA 133 CG13110-PA 1..133 1..133 725 100 Plus
CG31347-PA 143 CG31347-PA 6..117 3..113 262 44.6 Plus
CG43796-PA 127 CG43796-PA 4..106 11..112 234 42.7 Plus
CG14391-PA 135 CG14391-PA 5..116 3..112 229 42 Plus