Clone Sequence Records
BO14511.3prime Sequence
834 bp (826 high quality bases) assembled on 2006-05-29
> BO14511.3prime
ATGGTCTAGAAAGCTTGCAGGATCTGGACACTCTGGTTGCTTGAGGATCT
CAATGCAGCATGGATTGGCGTCGATTTTGCACACCTCGCTCTCCGTCTCC
ACCTCGCTGACATCGGTGAGATCGCACTCGCATGGGAAGCACTCCATCTC
GCCGCCCTCCTCGCCCTCGGCCTCTTCACCCTCTCCATACCAACTGATCT
TCTCCTCGCTGCGCATGCTCGGCTCAGTGGAGAGCGAGCAGACGGACAGC
TCGGAATCGGAAATGGCCAGAGGCACTGGCTCCTGCGGCAGCAGCGAAAA
GTCATACACGGCCATCTCCTGGGCGAACCATAGTGTTGGTTCCATTGGCT
CCGCTTCACCCATCTCGTCCTCCAAGCGCTCCTCGGCGTCCTCCATCTCG
TCTTCGTTGCTGATCGCCTTCATGTTGTAACTGGCGGGCAGGAAATAGCC
CAGCAGAAGGTATCGATTGTTGAAGCTAAACACGGCCGGTCCACTCGGGT
ACAGGTTATCCCAAATTCCGTGAAGTATTGTGCACTTGTCCTCATTGCCG
ATATACAGCTCGAAGGGACCCGTTCGCATGTTGCTGTTCCAGGTGGCCTT
CATTCTGACGGACAGGCAGCAGCCATCCTTTCCGCTGTTAAAGTGATAGA
TGCCCACCCCATGACGTTGTCCCTTGAACCAGTCACCCGAATAGTTGTCC
CCATTCACATACTTGTACCGGCCCTTGCCGTGCTTCAAGTTCTTTCGCCA
GTTGCCCTCGTACACGGATCCGTCCGGATAGATGAAGATGCCGCGCCCAC
AACGCTTCCCGCAGCGATACTGTCCGTAGTATCG
BO14511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 1035 | CG5458-RA | 217..1032 | 834..19 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16974-RB | 5528 | CG16974-RB | 4593..5408 | 19..834 | 4080 | 100 | Plus |
CG5458-RA | 1262 | CG5458-RA | 356..1171 | 834..19 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13183969..13184784 | 834..19 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:13:14 has no hits.
BO14511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:07 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 217..1035 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:47 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 217..1035 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:02:56 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16974-RB | 4593..5408 | 19..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:56 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 356..1171 | 19..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:56 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13183969..13184784 | 19..834 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:02:56 Download gff for
BO14511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13183969..13184784 | 19..834 | 100 | | Minus |
BO14511.5prime Sequence
906 bp (742 high quality bases) assembled on 2006-05-29
> BO14511.5prime
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGGA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
CCATTTCCGATTCCGAGCTGTCCGTCTGCTCGCTCTCCACTGAGCCGAGC
ATGCGCAGCGAGGAGAAGATCAGTTGGTATGGAAAGGGTGAAGAGGCCGA
GGGCGA
BO14511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 1035 | CG5458-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1262 | CG5458-RA | 139..1029 | 16..906 | 4440 | 99.9 | Plus |
CG16974-RB | 5528 | CG16974-RB | 4735..5528 | 906..113 | 3955 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13183828..13184642 | 92..906 | 4060 | 99.9 | Plus |
2L | 23513712 | 2L | 13183588..13183663 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:01:18 has no hits.
BO14511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:08 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:48 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:57 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1028 | 7..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:21 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1028 | 7..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:21 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13183580..13183663 | 7..91 | 96 | -> | Plus |
2L | 13183828..13184641 | 92..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:57 Download gff for
BO14511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13183580..13183663 | 7..91 | 96 | -> | Plus |
arm_2L | 13183828..13184641 | 92..905 | 99 | | Plus |
BO14511.complete Sequence
1066 bp assembled on 2006-10-11
GenBank Submission: FJ633161
> BO14511.complete
GAAGTTATCAGTCGACATGGCCATGACCGAAATGTCCGAGGAGGATCTGT
CGGCGCCCGAGGAAGAGGAGGATTTGGGACCCAATATAGGCCTCTACATA
GGCGGTCGAAATGCTGCCGGACAGAGACAAGGTAGAGGTTGGGCCATCCT
GCCCAACGGAGATCAGTATGATGGGAACTACAGGAAGGGTCGCCGTCACG
GCATCGGGGTGTACGTGTTCAAGGATGGTTCACGATACTACGGACAGTAT
CGCTGCGGGAAGCGTTGTGGGCGCGGCATCTTCATCTATCCGGACGGATC
CGTGTACGAGGGCAACTGGCGAAAGAACTTGAAGCACGGCAAGGGCCGGT
ACAAGTATGTGAATGGGGACAACTATTCGGGTGACTGGTTCAAGGGACAA
CGTCATGGGGTGGGCATCTATCACTTTAACAGCGGAAAGGATGGCTGCTG
CCTGTCCGTCAGAATGAAGGCCACCTGGAACAGCAACATGCGAACGGGTC
CCTTCGAGCTGTATATCGGCAATGAGGACAAGTGCACAATACTTCACGGA
ATTTGGGATAACCTGTACCCGAGTGGACCGGCCGTGTTTAGCTTCAACAA
TCGATACCTTCTGCTGGGCTATTTCCTGCCCGCCAGTTACAACATGAAGG
CGATCAGCAACGAAGACGAGATGGAGGACGCCGAGGAGCGCTTGGAGGAC
GAGATGGGTGAAGCGGAGCCAATGGAACCAACACTATGGTTCGCCCAGGA
GATGGCCGTGTATGACTTTTCGCTGCTGCCGCAGGAGCCAGTGCCTCTGG
CCATTTCCGATTCCGAGCTGTCCGTCTGCTCGCTCTCCACTGAGCCGAGC
ATGCGCAGCGAGGAGAAGATCAGTTGGTATGGAGAGGGTGAAGAGGCCGA
GGGCGAGGAGGGCGGCGAGATGGAGTGCTTCCCATGCGAGTGCGATCTCA
CCGATGTCAGCGAGGTGGAGACGGAGAGCGAGGTGTGCAAAATCGACGCC
AATCCATGCTGCATTGAGATCCTCAAGCAACCAGAGTGTCCAGATCCTGC
AAGCTTTCTAGACCAT
BO14511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1035 | CG5458-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-RA | 1262 | CG5458-RA | 139..1171 | 16..1048 | 5165 | 100 | Plus |
CG16974-RB | 5528 | CG16974-RB | 4593..5528 | 1048..113 | 4680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13183828..13184784 | 92..1048 | 4785 | 100 | Plus |
2L | 23513712 | 2L | 13183588..13183663 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:13:28 has no hits.
BO14511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:41 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 1..1035 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:21 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1171 | 7..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:02 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 140..1171 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:41 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 131..1171 | 7..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:19 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5458-RA | 140..1171 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:19 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13183589..13183663 | 17..91 | 100 | -> | Plus |
2L | 13183828..13184784 | 92..1050 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:02 Download gff for
BO14511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13183589..13183663 | 17..91 | 100 | -> | Plus |
arm_2L | 13183828..13184784 | 92..1050 | 99 | | Plus |
BO14511.pep Sequence
Translation from 16 to 1066
> BO14511.pep
MAMTEMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQ
YDGNYRKGRRHGIGVYVFKDGSRYYGQYRCGKRCGRGIFIYPDGSVYEGN
WRKNLKHGKGRYKYVNGDNYSGDWFKGQRHGVGIYHFNSGKDGCCLSVRM
KATWNSNMRTGPFELYIGNEDKCTILHGIWDNLYPSGPAVFSFNNRYLLL
GYFLPASYNMKAISNEDEMEDAEERLEDEMGEAEPMEPTLWFAQEMAVYD
FSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISWYGEGEEAEGEEGG
EMECFPCECDLTDVSEVETESEVCKIDANPCCIEILKQPECPDPASFLDH
BO14511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5458-PA | 344 | CG5458-PA | 1..344 | 1..344 | 1905 | 100 | Plus |
CG30429-PA | 305 | CG30429-PA | 77..200 | 36..160 | 183 | 32.1 | Plus |
CG14490-PA | 197 | CG14490-PA | 24..171 | 30..180 | 182 | 32.1 | Plus |
CG30429-PA | 305 | CG30429-PA | 69..162 | 51..140 | 174 | 36.2 | Plus |
CG14490-PA | 197 | CG14490-PA | 42..164 | 25..141 | 170 | 34.1 | Plus |
rtp-PA | 198 | CG10233-PA | 47..157 | 33..143 | 159 | 33 | Plus |
CG30429-PA | 305 | CG30429-PA | 89..193 | 21..124 | 156 | 31.4 | Plus |
rtp-PA | 198 | CG10233-PA | 64..147 | 27..110 | 155 | 39.3 | Plus |