Clone Sequence Records
BO14512.3prime Sequence
864 bp (767 high quality bases) assembled on 2006-05-29
> BO14512.3prime
ATGGTCTAGAAAGCTTGCACCATTTTTCTGCTTATACAAGGCGGATCCTT
GCCGCGCCAATTTGTCTGCCATTTCATTGCCCTCTATGCCCTTGTGGGCC
TCCACATAGTTCCATTTCACGGTGATGTTGTTCTCCTGAAGCAGTTTATC
CAGTTCCTTGAAGTCAACAACGTTTTTTACAGGCTGATTGTTCTTTAGCT
TCCAATCCCTTTTTTTCCAACCCGCAACCCACAGCGTTATGGAGTTGATC
AAAAACTGAGAGTCTGTGCTGATGCACAGCTTCTGTATTCCCAAGTCAAG
AGCTGTTTTAATGGCATGAATGGCCGCTTGTATTTCACCTACATTATTTG
TAACGCGTCCTTCCACGGGCTTGGCTGCGTTTAGCTGGTGATTCTTGCCG
AAATAAACGCCATAGCCGGCACAGGCGCCGGCTCGTCCGTTGCCTATGCA
GGAGCCATCTGTGTACACAATGACATAGCCCTCTGCATCGATTTCAAACT
GGAAGGCACCCACTTGCTTGAGTCCTGTGGCTTCTGAGACCTGAGAGGCA
TGACGTGGGATCTTGTTCCGCTTATCGCCGCTGGTCGTGCCCTTCCGCTT
GCGATTGAGAATGTCTGGTAAATTGCTACTGTTAGATGGCTTTGGATCTC
CCTCAACCTCGTTCATGGCAGCATTCAGATCATCCTCGGCTAGGTCGTGA
TCCTCTTCGGGCCACTCATCTGTGTACTTGGGGTTCTTATTCACTTCGAT
ACTGTTTTTCCAACTGGCCAGTGACGCCTTTTCCTTGCCCAGCGGCACGG
CCACATCCTGCGGAACATACGACTTGCAACCATTAACGAACTGATCCGCT
TTCTGGCGTGTCTT
BO14512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8729-PA | 1002 | rnh1-RA | 154..999 | 864..19 | 4080 | 99.2 | Minus |
CG8729-PB | 945 | rnh1-RB | 343..942 | 618..19 | 2925 | 99.5 | Minus |
CG8729-PB | 945 | rnh1-RB | 154..342 | 864..676 | 870 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 185..1030 | 864..19 | 4140 | 99.3 | Minus |
rnh1-RB | 1051 | CG8729-RB | 374..973 | 618..19 | 2955 | 99.5 | Minus |
rnh1-RB | 1051 | CG8729-RB | 185..373 | 864..676 | 900 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7931285..7931555 | 112..382 | 1340 | 99.6 | Plus |
2R | 25286936 | 2R | 7931611..7931846 | 383..618 | 1150 | 99.2 | Plus |
2R | 25286936 | 2R | 7932008..7932196 | 676..864 | 900 | 98.4 | Plus |
2R | 25286936 | 2R | 7931132..7931225 | 19..112 | 470 | 100 | Plus |
2R | 25286936 | 2R | 7931899..7931956 | 619..676 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:04:55 has no hits.
BO14512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:09 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-PA | 154..1002 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:50 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8729-PA | 154..1002 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:22 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 185..1045 | 7..864 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:07 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 185..1045 | 7..864 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:07 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931117..7931224 | 7..111 | 95 | <- | Plus |
2R | 7931285..7931555 | 112..382 | 99 | <- | Plus |
2R | 7931611..7931846 | 383..618 | 99 | <- | Plus |
2R | 7931899..7931955 | 619..675 | 100 | <- | Plus |
2R | 7932008..7932196 | 676..864 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:22 Download gff for
BO14512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3819513..3819701 | 676..864 | 98 | | Plus |
arm_2R | 3818622..3818729 | 7..111 | 95 | <- | Plus |
arm_2R | 3818790..3819060 | 112..382 | 99 | <- | Plus |
arm_2R | 3819116..3819351 | 383..618 | 99 | <- | Plus |
arm_2R | 3819404..3819460 | 619..675 | 100 | <- | Plus |
BO14512.5prime Sequence
758 bp (709 high quality bases) assembled on 2006-05-29
> BO14512.5prime
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGT
BO14512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8729-PA | 1002 | rnh1-RA | 1..742 | 17..758 | 3660 | 99.7 | Plus |
CG8729-PB | 945 | rnh1-RB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG8729-PB | 945 | rnh1-RB | 343..685 | 416..758 | 1665 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 32..773 | 17..758 | 3680 | 99.7 | Plus |
rnh1-RB | 1051 | CG8729-RB | 32..373 | 17..358 | 1710 | 100 | Plus |
rnh1-RB | 1051 | CG8729-RB | 374..716 | 416..758 | 1685 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7932008..7932349 | 358..17 | 1710 | 100 | Minus |
2R | 25286936 | 2R | 7931611..7931846 | 651..416 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 7931449..7931555 | 758..652 | 535 | 100 | Minus |
2R | 25286936 | 2R | 7931899..7931956 | 415..358 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:00:46 has no hits.
BO14512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:10 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:51 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8729-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:55 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 32..773 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:24 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 32..773 | 17..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:24 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7932008..7932349 | 17..358 | 100 | | Minus |
2R | 7931449..7931555 | 652..758 | 100 | <- | Minus |
2R | 7931611..7931846 | 416..651 | 99 | <- | Minus |
2R | 7931899..7931955 | 359..415 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:55 Download gff for
BO14512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3818954..3819060 | 652..758 | 100 | <- | Minus |
arm_2R | 3819116..3819351 | 416..651 | 99 | <- | Minus |
arm_2R | 3819404..3819460 | 359..415 | 100 | <- | Minus |
arm_2R | 3819513..3819854 | 17..358 | 100 | | Minus |
BO14512.complete Sequence
1033 bp assembled on 2006-10-11
GenBank Submission: FJ633162
> BO14512.complete
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAACAATCAG
CCTGTAAAAAACGTTGTTGACTTCAAGGAACTGGATAAACTGCTTCAGGA
GAACAACATCACCGTGAAATGGAACTATGTGGAGGCCCACAAGGGCATAG
AGGGCAATGAAATGGCAGACAAATTGGCGCGGCAAGGATCCGCCTTGTAT
AAGCAGAAAAATGGTGCAAGCTTTCTAGACCAT
BO14512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1002 | CG8729-PA | 1..999 | 17..1015 | 4950 | 99.7 | Plus |
rnh1-RB | 945 | CG8729-PB | 343..942 | 416..1015 | 2955 | 99.5 | Plus |
rnh1-RB | 945 | CG8729-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1108 | CG8729-RA | 32..1030 | 17..1015 | 4950 | 99.7 | Plus |
rnh1-RB | 1051 | CG8729-RB | 374..973 | 416..1015 | 2955 | 99.5 | Plus |
rnh1-RB | 1051 | CG8729-RB | 32..373 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7932008..7932349 | 358..17 | 1710 | 100 | Minus |
2R | 25286936 | 2R | 7931285..7931555 | 922..652 | 1340 | 99.6 | Minus |
2R | 25286936 | 2R | 7931611..7931846 | 651..416 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 7931132..7931225 | 1015..922 | 470 | 100 | Minus |
2R | 25286936 | 2R | 7931899..7931956 | 415..358 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:49:10 has no hits.
BO14512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:43 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:23 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 38..1051 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:15 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 37..1030 | 22..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:44 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 38..1051 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:00 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 37..1030 | 22..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:00 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931285..7931555 | 652..922 | 99 | <- | Minus |
2R | 7931611..7931846 | 416..651 | 99 | <- | Minus |
2R | 7931899..7931955 | 359..415 | 100 | <- | Minus |
2R | 7932008..7932344 | 22..358 | 100 | | Minus |
2R | 7931129..7931224 | 923..1017 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:15 Download gff for
BO14512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3818634..3818729 | 923..1017 | 97 | <- | Minus |
arm_2R | 3818790..3819060 | 652..922 | 99 | <- | Minus |
arm_2R | 3819116..3819351 | 416..651 | 99 | <- | Minus |
arm_2R | 3819404..3819460 | 359..415 | 100 | <- | Minus |
arm_2R | 3819513..3819849 | 22..358 | 100 | | Minus |
BO14512.pep Sequence
Translation from 16 to 1033
> BO14512.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNGASFLDH
BO14512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-PA | 333 | CG8729-PA | 1..333 | 1..333 | 1775 | 100 | Plus |
rnh1-PB | 314 | CG8729-PB | 1..314 | 1..333 | 1647 | 94.3 | Plus |