Clone BO14512 Report

Search the DGRC for BO14512

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptrnh1-RA
Protein status:BO14512.pep: validated full length
Sequenced Size:1033

Clone Sequence Records

BO14512.3prime Sequence

864 bp (767 high quality bases) assembled on 2006-05-29

> BO14512.3prime
ATGGTCTAGAAAGCTTGCACCATTTTTCTGCTTATACAAGGCGGATCCTT
GCCGCGCCAATTTGTCTGCCATTTCATTGCCCTCTATGCCCTTGTGGGCC
TCCACATAGTTCCATTTCACGGTGATGTTGTTCTCCTGAAGCAGTTTATC
CAGTTCCTTGAAGTCAACAACGTTTTTTACAGGCTGATTGTTCTTTAGCT
TCCAATCCCTTTTTTTCCAACCCGCAACCCACAGCGTTATGGAGTTGATC
AAAAACTGAGAGTCTGTGCTGATGCACAGCTTCTGTATTCCCAAGTCAAG
AGCTGTTTTAATGGCATGAATGGCCGCTTGTATTTCACCTACATTATTTG
TAACGCGTCCTTCCACGGGCTTGGCTGCGTTTAGCTGGTGATTCTTGCCG
AAATAAACGCCATAGCCGGCACAGGCGCCGGCTCGTCCGTTGCCTATGCA
GGAGCCATCTGTGTACACAATGACATAGCCCTCTGCATCGATTTCAAACT
GGAAGGCACCCACTTGCTTGAGTCCTGTGGCTTCTGAGACCTGAGAGGCA
TGACGTGGGATCTTGTTCCGCTTATCGCCGCTGGTCGTGCCCTTCCGCTT
GCGATTGAGAATGTCTGGTAAATTGCTACTGTTAGATGGCTTTGGATCTC
CCTCAACCTCGTTCATGGCAGCATTCAGATCATCCTCGGCTAGGTCGTGA
TCCTCTTCGGGCCACTCATCTGTGTACTTGGGGTTCTTATTCACTTCGAT
ACTGTTTTTCCAACTGGCCAGTGACGCCTTTTCCTTGCCCAGCGGCACGG
CCACATCCTGCGGAACATACGACTTGCAACCATTAACGAACTGATCCGCT
TTCTGGCGTGTCTT

BO14512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8729-PA 1002 rnh1-RA 154..999 864..19 4080 99.2 Minus
CG8729-PB 945 rnh1-RB 343..942 618..19 2925 99.5 Minus
CG8729-PB 945 rnh1-RB 154..342 864..676 870 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 185..1030 864..19 4140 99.3 Minus
rnh1-RB 1051 CG8729-RB 374..973 618..19 2955 99.5 Minus
rnh1-RB 1051 CG8729-RB 185..373 864..676 900 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7931285..7931555 112..382 1340 99.6 Plus
2R 25286936 2R 7931611..7931846 383..618 1150 99.2 Plus
2R 25286936 2R 7932008..7932196 676..864 900 98.4 Plus
2R 25286936 2R 7931132..7931225 19..112 470 100 Plus
2R 25286936 2R 7931899..7931956 619..676 290 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:04:55 has no hits.

BO14512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:09 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-PA 154..1002 16..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:50 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8729-PA 154..1002 16..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:22 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 185..1045 7..864 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:07 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 185..1045 7..864 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:07 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7931117..7931224 7..111 95 <- Plus
2R 7931285..7931555 112..382 99 <- Plus
2R 7931611..7931846 383..618 99 <- Plus
2R 7931899..7931955 619..675 100 <- Plus
2R 7932008..7932196 676..864 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:22 Download gff for BO14512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3819513..3819701 676..864 98   Plus
arm_2R 3818622..3818729 7..111 95 <- Plus
arm_2R 3818790..3819060 112..382 99 <- Plus
arm_2R 3819116..3819351 383..618 99 <- Plus
arm_2R 3819404..3819460 619..675 100 <- Plus

BO14512.5prime Sequence

758 bp (709 high quality bases) assembled on 2006-05-29

> BO14512.5prime
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGT

BO14512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8729-PA 1002 rnh1-RA 1..742 17..758 3660 99.7 Plus
CG8729-PB 945 rnh1-RB 1..342 17..358 1710 100 Plus
CG8729-PB 945 rnh1-RB 343..685 416..758 1665 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 32..773 17..758 3680 99.7 Plus
rnh1-RB 1051 CG8729-RB 32..373 17..358 1710 100 Plus
rnh1-RB 1051 CG8729-RB 374..716 416..758 1685 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7932008..7932349 358..17 1710 100 Minus
2R 25286936 2R 7931611..7931846 651..416 1150 99.2 Minus
2R 25286936 2R 7931449..7931555 758..652 535 100 Minus
2R 25286936 2R 7931899..7931956 415..358 290 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:00:46 has no hits.

BO14512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:10 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-PA 1..742 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:51 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8729-PA 1..742 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:55 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 32..773 17..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:24 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 32..773 17..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:24 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7932008..7932349 17..358 100   Minus
2R 7931449..7931555 652..758 100 <- Minus
2R 7931611..7931846 416..651 99 <- Minus
2R 7931899..7931955 359..415 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:55 Download gff for BO14512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3818954..3819060 652..758 100 <- Minus
arm_2R 3819116..3819351 416..651 99 <- Minus
arm_2R 3819404..3819460 359..415 100 <- Minus
arm_2R 3819513..3819854 17..358 100   Minus

BO14512.complete Sequence

1033 bp assembled on 2006-10-11

GenBank Submission: FJ633162

> BO14512.complete
GAAGTTATCAGTCGACATGTTACTTCCGCGGTATTTTTGCTGGAACCTCC
AACGCTGCACGATGGCGTTTTACGCTGTAGCCAGTGGGCGGCGGTCTGGA
GTCTACGGCTCTTGGGCAGAGTGCGAGGAGCAGGTCAAGGGTTTCAAGAA
CGCCAAATACAAGAAGTTTAAGACACGCCAGGAAGCGGATCAGTTCGTTA
ATGGCTGCAAGTCGTATGCTCCGCAGGATGTGGCCGTGCCGCTGGGCAAG
GAAAAGGCGTCACTGGCCAGTTGGAAAAACAGTATCGAAGTGAATAAGAA
CCCCAAGTACACAGATGAGTGGCCCGAAGAGGATCACGACCTAGCCGAGG
ATGATCTGAATGCTGCCATGAACGAGGTTGAGGGAGATCCAAAGCCATCT
AACAGTAGCAATTTACCAGACATTCTCAATCGCAAGCGGAAGGGCACGAC
CAGCGGCGATAAGCGGAACAAGATCCCACGTCATGCCTCTCAGGTCTCAG
AAGCCACAGGACTCAAGCAAGTGGGTGCCTTCCAGTTTGAAATCGATGCA
GAGGGCTATGTCATTGTGTACACAGATGGCTCCTGCATAGGCAACGGACG
AGCCGGCGCCTGTGCCGGCTATGGCGTTTATTTCGGCAAGAATCACCAGC
TAAACGCAGCCAAGCCCGTGGAAGGACGCGTTACAAATAATGTAGGTGAA
ATACAAGCGGCCATTCATGCCATTAAAACAGCTCTTGACTTGGGAATACA
GAAGCTGTGCATCAGCACAGACTCTCAGTTTTTGATCAACTCCATAACGC
TGTGGGTTGCGGGTTGGAAAAAAAGGGATTGGAAGCTAAAGAACAATCAG
CCTGTAAAAAACGTTGTTGACTTCAAGGAACTGGATAAACTGCTTCAGGA
GAACAACATCACCGTGAAATGGAACTATGTGGAGGCCCACAAGGGCATAG
AGGGCAATGAAATGGCAGACAAATTGGCGCGGCAAGGATCCGCCTTGTAT
AAGCAGAAAAATGGTGCAAGCTTTCTAGACCAT

BO14512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1002 CG8729-PA 1..999 17..1015 4950 99.7 Plus
rnh1-RB 945 CG8729-PB 343..942 416..1015 2955 99.5 Plus
rnh1-RB 945 CG8729-PB 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1108 CG8729-RA 32..1030 17..1015 4950 99.7 Plus
rnh1-RB 1051 CG8729-RB 374..973 416..1015 2955 99.5 Plus
rnh1-RB 1051 CG8729-RB 32..373 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7932008..7932349 358..17 1710 100 Minus
2R 25286936 2R 7931285..7931555 922..652 1340 99.6 Minus
2R 25286936 2R 7931611..7931846 651..416 1150 99.2 Minus
2R 25286936 2R 7931132..7931225 1015..922 470 100 Minus
2R 25286936 2R 7931899..7931956 415..358 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:49:10 has no hits.

BO14512.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:43 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 17..1018 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:23 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 38..1051 17..1027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:15 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 37..1030 22..1017 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:44 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 38..1051 17..1027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:00 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 37..1030 22..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:00 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7931285..7931555 652..922 99 <- Minus
2R 7931611..7931846 416..651 99 <- Minus
2R 7931899..7931955 359..415 100 <- Minus
2R 7932008..7932344 22..358 100   Minus
2R 7931129..7931224 923..1017 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:15 Download gff for BO14512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3818634..3818729 923..1017 97 <- Minus
arm_2R 3818790..3819060 652..922 99 <- Minus
arm_2R 3819116..3819351 416..651 99 <- Minus
arm_2R 3819404..3819460 359..415 100 <- Minus
arm_2R 3819513..3819849 22..358 100   Minus

BO14512.pep Sequence

Translation from 16 to 1033

> BO14512.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNGASFLDH

BO14512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-PA 333 CG8729-PA 1..333 1..333 1775 100 Plus
rnh1-PB 314 CG8729-PB 1..314 1..333 1647 94.3 Plus