Clone Sequence Records
BO14514.3prime Sequence
908 bp (784 high quality bases) assembled on 2006-05-29
> BO14514.3prime
ATGGTCTAGAAAGCTTGCGTTTTGCAGAAGTCTGTCGAGCGAGGATGCGA
GTTCTTTGGATATGGCGTCTGGAAACTGGATGGAGAACCTGACGACGATG
GAGCCGCGACGGGAATTATTAATGGAATCGGGCAATCCGTAGCCCAGAAT
GCGGCGCACGGATTTCGGACTGATTACCTCGCCCACGTCGGTCTTGAGTT
CCATCGGCCTGCCAAGAAGCGTCGGCACCATCACGTGTAAACCGCACAGA
GCATCCTTCAGCGAGATTTCGGCTGTGTACAGCAGATTGTTGCCATCGCG
GCGAAAGATTGGGTGTGGCTTGTCCCGGATTATAAACACGACGTTGGCGG
GCTCAAGGTTGGGCAGTTGAATACCCTCATTGGGAAAGCAGATCTTGGTG
CCAGCCTTACAGCCCGGAGGTATCTTGACAGTGAGAATTCTGTCATATTG
TACCCCATCAACGCCGTTCCTACCCGAAGCCCGGGAGATCTTCATGCGCC
TGTTGCACCCGTTGGCAATGTCCTCCAGAGCAACGTATATTACATGTTCG
ATGCTTGACTGGGGTGACTGTTGTTCGCAACGACGTTTAGGCGCGCCCGC
TCCTCCACCCAACAGGACGTCATCGTCGCTGTCAAAATCGTTTTCGATAT
CCTCGAAGAACGTAGAATATGATTCGCTGTTGTCGAAGAAACGTCCAAAG
TTGGCCCGCGGGTTGTTCTGGCGACCACCGCCACTGCCACCGCCACTGCC
ACTGCCACTGCCACCACCACAGCTACCAAATGCCGTTTCATCGCCGAAAC
CGCTACCTTGATTCGCGGTATTGCGTCGGGTACCCTTGTCATTGCGGGAG
TCGTACGATCCGCGCTTCTTTTTGTCTGATAGGACTTCATATGCCTTGGC
CACCTGCT
BO14514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-PA | 1029 | CG2887-RA | 137..1026 | 908..19 | 4425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-RA | 1234 | CG2887-RA | 207..1096 | 908..19 | 4435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10477398..10478287 | 19..908 | 4435 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:54:38 has no hits.
BO14514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:13 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-PA | 137..1029 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:55 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-PA | 137..1029 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:25 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 207..1096 | 19..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:51:50 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 207..1096 | 19..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:51:50 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10477398..10478287 | 19..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:25 Download gff for
BO14514.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10371431..10372320 | 19..908 | 99 | | Plus |
BO14514.5prime Sequence
944 bp (788 high quality bases) assembled on 2006-05-29
> BO14514.5prime
GAAGTTATCAGTCGACATGCCTAAAGACTACTACAAGATACTGGGCATCC
AGCGCACTGCCAATGATGGCGAAATCCGCAAGGCATATCATAAGCAAGCG
CTGCGCTACCATCCGGACAAAAACAAGAGCCCTCAGGCGGAGGAGATCTT
TAAGCAGGTGGCCAAGGCATATGAAGTCCTATCAGACAAAAAGAAGCGCG
GATCGTACGACTCCCGCAATGACAAGGGTACCCGACGCAATACCGCGAAT
CAAGGTAGCGGTTTCGGCGATGGAACGGCATTTGGTAGCTGTGGTGGTGG
CAGTGGCAGTGGCAGTGGCGGTGGCAGTGGCGGTGGTCGCCAGAACAACC
CGCGGGCCAACTTTGGACGTTTCTTCGACAACAGCGAATCATATTCTACG
TTCTTCGAGGATATCGAAAACGATTTTGACAGCGACGATGACGTCCTGTT
GGGTGGAGGAGCGGGCGCGCCTAAACGTCGTTGCGAACAACAGTCACCCC
AGTCAAGCATCGAACATGTAATATACGTTGCTCTGGAGGACATTGCCAAC
GGGTGCAACAGGCGCATGAAGATCTCCCGGGCTTCGGGTAGGAACGGCGT
TGATGGGGTACAATATGACAGAATTCTCACTGTCAAGATACCTCCGGGCT
GTAAGGCTGGCACCAAGATCTGCTTTCCCAATGAGGGTATTCAACTGCCC
AACCTTGAGCCCGCCAACGTCGTGTTTATAATCCGGGACAAGCCACACCC
AATCTTTCGCCGCGATGGCAACAATCTGCTGTACACAGCCGAAATCTCGC
TGAAGGATGCTCTGTGCGGTTTACACGTGATGGTGCCGACGCTTCTTGGC
AGGCCGATGGAACTCAAGACCGACGTGAGCGAGGTAATCAGTCCGAAATC
CGTGCGCCGCATTCTGGGCTACGGATTGCCCGATTCAATAATAA
BO14514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-PA | 1029 | CG2887-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-RA | 1234 | CG2887-RA | 70..999 | 16..944 | 4595 | 99.7 | Plus |
| DnaJ-1-RA | 1916 | CG10578-RA | 358..535 | 23..200 | 245 | 75.8 | Plus |
| DnaJ-1-RB | 2161 | CG10578-RB | 603..780 | 23..200 | 245 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10477504..10478424 | 936..16 | 4590 | 99.9 | Minus |
| 3L | 28110227 | 3L | 5751410..5751587 | 200..23 | 245 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:26 has no hits.
BO14514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:14 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:57 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:54 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..999 | 16..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:43 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..999 | 16..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:43 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10477495..10478424 | 16..944 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:54 Download gff for
BO14514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10371528..10372457 | 16..944 | 99 | | Minus |
BO14514.complete Sequence
1060 bp assembled on 2006-10-11
GenBank Submission: FJ633163
> BO14514.complete
GAAGTTATCAGTCGACATGCCTAAAGACTACTACAAGATACTGGGCATCC
AGCGCACTGCCAATGATGGCGAAATCCGCAAGGCATATCATAAGCAAGCG
CTGCGCTACCATCCGGACAAAAACAAGAGCCCTCAGGCGGAGGAGATCTT
TAAGCAGGTGGCCAAGGCATATGAAGTCCTATCAGACAAAAAGAAGCGCG
GATCGTACGACTCCCGCAATGACAAGGGTACCCGACGCAATACCGCGAAT
CAAGGTAGCGGTTTCGGCGATGGAACGGCATTTGGTAGCTGTGGTGGTGG
CAGTGGCAGTGGCAGTGGCGGTGGCAGTGGCGGTGGTCGCCAGAACAACC
CGCGGGCCAACTTTGGACGTTTCTTCGACAACAGCGAATCATATTCTACG
TTCTTCGAGGATATCGAAAACGATTTTGACAGCGACGATGACGTCCTGTT
GGGTGGAGGAGCGGGCGCGCCTAAACGTCGTTGCGAACAACAGTCACCCC
AGTCAAGCATCGAACATGTAATATACGTTGCTCTGGAGGACATTGCCAAC
GGGTGCAACAGGCGCATGAAGATCTCCCGGGCTTCGGGTAGGAACGGCGT
TGATGGGGTACAATATGACAGAATTCTCACTGTCAAGATACCTCCGGGCT
GTAAGGCTGGCACCAAGATCTGCTTTCCCAATGAGGGTATTCAACTGCCC
AACCTTGAGCCCGCCAACGTCGTGTTTATAATCCGGGACAAGCCACACCC
AATCTTTCGCCGCGATGGCAACAATCTGCTGTACACAGCCGAAATCTCGC
TGAAGGATGCTCTGTGCGGTTTACACGTGATGGTGCCGACGCTTCTTGGC
AGGCCGATGGAACTCAAGACCGACGTGGGCGAGGTAATCAGTCCGAAATC
CGTGCGCCGCATTCTGGGCTACGGATTGCCCGATTCCATTAATAATTCCC
GTCGCGGCTCCATCGTCGTCAGGTTCTCCATCCAGTTTCCAGACGCCATA
TCCAAAGAACTCGCATCCTCGCTCGACAGACTTCTGCAAAACGCAAGCTT
TCTAGACCAT
BO14514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-RA | 1029 | CG2887-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| DnaJ-1-RA | 1005 | CG10578-PA | 7..184 | 23..200 | 245 | 75.8 | Plus |
| DnaJ-1-RB | 1005 | CG10578-PB | 7..184 | 23..200 | 245 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-RA | 1234 | CG2887-RA | 70..1096 | 16..1042 | 5135 | 100 | Plus |
| DnaJ-1-RA | 1916 | CG10578-RA | 358..535 | 23..200 | 245 | 75.8 | Plus |
| DnaJ-1-RB | 2161 | CG10578-RB | 603..780 | 23..200 | 245 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10477398..10478424 | 1042..16 | 5135 | 100 | Minus |
| 3L | 28110227 | 3L | 5751410..5751587 | 200..23 | 245 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:14:38 has no hits.
BO14514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:02 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 1..1029 | 17..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:01 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..1096 | 16..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:12:53 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 71..1096 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:02 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 70..1096 | 16..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:59 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2887-RA | 71..1096 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:59 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10477395..10478423 | 17..1044 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:12:53 Download gff for
BO14514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10371428..10372456 | 17..1044 | 99 | | Minus |
BO14514.pep Sequence
Translation from 16 to 1060
> BO14514.pep
MPKDYYKILGIQRTANDGEIRKAYHKQALRYHPDKNKSPQAEEIFKQVAK
AYEVLSDKKKRGSYDSRNDKGTRRNTANQGSGFGDGTAFGSCGGGSGSGS
GGGSGGGRQNNPRANFGRFFDNSESYSTFFEDIENDFDSDDDVLLGGGAG
APKRRCEQQSPQSSIEHVIYVALEDIANGCNRRMKISRASGRNGVDGVQY
DRILTVKIPPGCKAGTKICFPNEGIQLPNLEPANVVFIIRDKPHPIFRRD
GNNLLYTAEISLKDALCGLHVMVPTLLGRPMELKTDVGEVISPKSVRRIL
GYGLPDSINNSRRGSIVVRFSIQFPDAISKELASSLDRLLQNASFLDH
BO14514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2887-PA | 342 | CG2887-PA | 1..342 | 1..342 | 1793 | 100 | Plus |
| DnaJ-1-PA | 334 | CG10578-PA | 1..334 | 1..342 | 725 | 44.9 | Plus |
| DnaJ-1-PB | 334 | CG10578-PB | 1..334 | 1..342 | 725 | 44.9 | Plus |
| CG5001-PC | 346 | CG5001-PC | 1..335 | 1..329 | 659 | 41.7 | Plus |
| CG5001-PD | 350 | CG5001-PD | 1..339 | 1..329 | 655 | 41.2 | Plus |
