Clone Sequence Records
BO14516.3prime Sequence
912 bp (785 high quality bases) assembled on 2006-05-29
> BO14516.3prime
ATGGTCTAGAAAGCTTGCTTGTTTTTTTTCATGAATACCGCATCCGAAAC
AAGTAAATGGCTGACGCAGGGCCAGCATCCGATCGCGATTCATTCGAAAG
ATATGATCCTGCATCAACTGGTCAGTGTGGGAGCGTATTTGATTACGATC
CTCGAGGACATGACGCAACTGAATCAAAGCGTTATCACCATCGATGCCGC
ACAATTCCTCCTCGTCGGCGTGCAGACTCATATCGGCGATGCCCAAACGG
GCCATGGCCATGGCAATATTATCAATGTCGCTATCAACATGAAAGCACGA
TAGGTATTTCTGATCAGCCTCAGTTGAGCATTTATCCAACTCCTGCGACT
GATCGCCCACTGTACACATTTCATTCCTTTCTCGAGTTTCTGTGGCTTCT
TCAGCAGTGGCCGGTTTCTTAACCACCCTCACAATGCATCCATCATCAAA
GGCCTCGTCGTAGTTTTGCACACTGTATGCCCCCTTTGGTGACTTCGGCT
CCTTCGTTTCCATTACCATAAAGCCCTTGGTGATGGAAATATCAAATTTA
GGTTTGACACCTGCTAGCGTTGCCTTTGACTCAGCATCATCGCTGGCTTT
CTTTTCGATCTCAAATTGAATTTTCTTTATCATATCGACGGCCGGCTCTT
CGCGACAAATCTTGCCAACGAATAGCGGTGGTGTGATGGAACCATTATAC
TGTGGCTGTGGTGGACCGAAACGTCCGATGTAGTCCATGAACCACAGTTC
GGATAGAGTTCCCGGCTTGATGACGCAACCGGCTTCGAATCCTTTGGGCA
TGAAACGTTTGGGCAGAAAAATTGGTCGATTGACGCCCTCACAAATGGGA
AAGACTCCGATGGGCAGCTCGAACTTGGGGCACTCCGCATCATCGCCCAT
GGTGGCGAATGC
BO14516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 1398 | CG15333-RA | 502..1395 | 912..19 | 4470 | 100 | Minus |
CG15332-PB | 1674 | CG15332-RB | 748..923 | 912..737 | 380 | 88.6 | Minus |
CG15332-PA | 1716 | CG15332-RA | 790..965 | 912..737 | 380 | 88.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 814..1707 | 912..19 | 4470 | 100 | Minus |
CG15332-RA | 2003 | CG15332-RA | 985..1160 | 912..737 | 580 | 88.6 | Minus |
CG15332-RA | 2003 | CG15332-RA | 1374..1482 | 532..424 | 230 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8019639..8020532 | 19..912 | 4470 | 100 | Plus |
X | 23542271 | X | 7954695..7954870 | 737..912 | 580 | 88.6 | Plus |
X | 23542271 | X | 7954373..7954481 | 424..532 | 230 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:01:11 has no hits.
BO14516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:17 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 502..1398 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:01 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 502..1398 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:23 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 814..1696 | 30..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:51:55 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 814..1696 | 30..912 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:51:55 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8019650..8020532 | 30..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:23 Download gff for
BO14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7913683..7914565 | 30..912 | 100 | | Plus |
BO14516.5prime Sequence
931 bp (778 high quality bases) assembled on 2006-05-29
> BO14516.5prime
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAAGAAATTCAATTTGAGATCGAAAAGAAAGCCAGCGATGATGCTGAG
TCAAAGGCAACGCTAGCAGGTGTCAAACCTAAATTTGATATTTCCATCAC
CAAAGGCTTTATGGTAATGGAAACAAAGGAA
BO14516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 1398 | CG15333-RA | 1..914 | 17..930 | 4470 | 99.5 | Plus |
CG15332-PA | 1716 | CG15332-RA | 754..965 | 482..693 | 560 | 90.5 | Plus |
CG15332-PB | 1674 | CG15332-RB | 712..923 | 482..693 | 560 | 90.5 | Plus |
CG15332-PA | 1716 | CG15332-RA | 319..363 | 47..91 | 150 | 93.3 | Plus |
CG15332-PB | 1674 | CG15332-RB | 277..321 | 47..91 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 313..1226 | 17..930 | 4510 | 99.6 | Plus |
CG15332-RA | 2003 | CG15332-RA | 833..1160 | 366..693 | 905 | 85.4 | Plus |
CG15332-RA | 2003 | CG15332-RA | 490..643 | 23..176 | 265 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8020120..8021033 | 930..17 | 4510 | 99.6 | Minus |
X | 23542271 | X | 7954695..7955022 | 693..366 | 905 | 85.1 | Minus |
X | 23542271 | X | 7955212..7955365 | 176..23 | 260 | 77.9 | Minus |
Blast to na_te.dros performed 2015-02-04 02:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dm88 | 4558 | Dm88 DM88 4558bp | 702..766 | 786..848 | 130 | 70.8 | Plus |
BO14516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:18 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:02 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:07 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 309..1226 | 12..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:22 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 309..1226 | 12..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:22 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8020119..8021037 | 12..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:07 Download gff for
BO14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7914152..7915070 | 12..931 | 99 | | Minus |
BO14516.complete Sequence
1429 bp assembled on 2006-10-11
GenBank Submission: FJ633164
> BO14516.complete
GAAGTTATCAGTCGACATGGACAAGATTGTCTTTCTGCCAACGTCCATGT
TGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGCCGGGTATCCTTACG
CGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGTCACAAGGGTCAAAC
GCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCAACCGCCGACAAGGG
TCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAACCAATTCAGGACACA
TTGATGAATTGGTTGCATGCCAGCAATGATCTTATAAATGGGGCACAGCC
AAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATCGATGGTCTTCAATT
TGCCAATACCACCGAGTCCACCATCGCCCTATTCATATGGCCGTATCCCG
TTGCAGTGCAACATTTATACGCCGGATCTGTCCAATGTTCTGTTGCTTAT
GTCGCACCAACGCGATCTTACGGTGGCGATACTGTCCACCGTTAACAATC
CGCATGTTCCATCTGTGGCATTCGCCACCATGGGCGATGATGCGGAGTGC
CCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATTTGTGAGGGCGTCAA
TCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAAAGGATTCGAAGCCG
GTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGTGGTTCATGGACTAC
ATCGGACGTTTCGGTCCACCACAGCCACAGTATAATGGTTCCATCACACC
ACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCCGGCCGTCGATATGA
TAAAGAAAATTCAATTTGAGATCGAAAAGAAAGCCAGCGATGATGCTGAG
TCAAAGGCAACGCTAGCAGGTGTCAAACCTAAATTTGATATTTCCATCAC
CAAGGGCTTTATGGTAATGGAAACGAAGGAGCCGAAGTCACCAAAGGGGG
CATACAGTGTGCAAAACTACGACGAGGCCTTTGATGATGGATGCATTGTG
AGGGTGGTTAAGAAACCGGCCACTGCTGAAGAAGCCACAGAAACTCGAGA
AAGGAATGAAATGTGTACAGTGGGCGATCAGTCGCAGGAGTTGGATAAAT
GCTCAACTGAGGCTGATCAGAAATACCTATCGTGCTTTCATGTTGATAGC
GACATTGATAATATTGCCATGGCCATGGCCCGTTTGGGCATCGCCGATAT
GAGTCTGCACGCCGACGAGGAGGAATTGTGCGGCATCGATGGTGATAACG
CTTTGATTCAGTTGCGTCATGTCCTCGAGGATCGTAATCAAATACGCTCC
CACACTGACCAGTTGATGCAGGATCATATCTTTCGAATGAATCGCGATCG
GATGCTGGCCCTGCGTCAGCCATTTACTTGTTTCGGATGCGGTATTCATG
AAAAAAAACAAGCAAGCTTTCTAGACCAT
BO14516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1629 | CG15333-PA | 232..1626 | 17..1411 | 6975 | 100 | Plus |
CG15332-RA | 1716 | CG15332-PA | 638..965 | 366..693 | 905 | 85.1 | Plus |
CG15332-RA | 1716 | CG15332-PA | 295..448 | 23..176 | 260 | 77.9 | Plus |
CG15332-RA | 1716 | CG15332-PA | 1179..1287 | 898..1006 | 230 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-RA | 1823 | CG15333-RA | 313..1707 | 17..1411 | 6975 | 100 | Plus |
CG15332-RA | 2003 | CG15332-RA | 833..1160 | 366..693 | 905 | 85.1 | Plus |
CG15332-RA | 2003 | CG15332-RA | 490..643 | 23..176 | 260 | 77.9 | Plus |
CG15332-RA | 2003 | CG15332-RA | 1374..1482 | 898..1006 | 230 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8019639..8021033 | 1411..17 | 6975 | 100 | Minus |
X | 23542271 | X | 7954695..7955022 | 693..366 | 905 | 85.1 | Minus |
X | 23542271 | X | 7955212..7955365 | 176..23 | 260 | 77.9 | Minus |
X | 23542271 | X | 7954373..7954481 | 1006..898 | 230 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:20 has no hits.
BO14516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:07 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1629 | 12..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:03 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1615 | 12..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:20 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 313..1696 | 17..1400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:07 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 228..1615 | 12..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:19 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15333-RA | 313..1696 | 17..1400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:19 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8019650..8021033 | 17..1400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:20 Download gff for
BO14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7913683..7915066 | 17..1400 | 100 | | Minus |
BO14516.pep Sequence
Translation from 16 to 1429
> BO14516.pep
MDKIVFLPTSMLPMGFEAGGVFGPGILTRRSYPIDLKAAGHKGQTPPLFV
GLRMEVQPPTRVESLLKKDGESQPIQDTLMNWLHASNDLINGAQPKGQEL
RDEFSLSMVFNLPIPPSPPSPYSYGRIPLQCNIYTPDLSNVLLLMSHQRD
LTVAILSTVNNPHVPSVAFATMGDDAECPKFELPIGVFPICEGVNRPIFL
PKRFMPKGFEAGCVIKPGTLSELWFMDYIGRFGPPQPQYNGSITPPLFVG
KICREEPAVDMIKKIQFEIEKKASDDAESKATLAGVKPKFDISITKGFMV
METKEPKSPKGAYSVQNYDEAFDDGCIVRVVKKPATAEEATETRERNEMC
TVGDQSQELDKCSTEADQKYLSCFHVDSDIDNIAMAMARLGIADMSLHAD
EEELCGIDGDNALIQLRHVLEDRNQIRSHTDQLMQDHIFRMNRDRMLALR
QPFTCFGCGIHEKKQASFLDH
BO14516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15333-PA | 542 | CG15333-PA | 78..542 | 1..465 | 2464 | 100 | Plus |
CG15332-PA | 571 | CG15332-PA | 97..570 | 1..461 | 1167 | 51.1 | Plus |