Clone Sequence Records
BO14517.3prime Sequence
908 bp (790 high quality bases) assembled on 2006-05-29
> BO14517.3prime
ATGGTCTAGAAAGCTTGCAATGAATTTTAAGCGATAAGGAATAACACCTT
GATCAGTGTTGAAATTTAACAGGATATCAACAACGTACAACGGGCGGTCA
GCGGTTAATTCTTCGCCATCGTCTTCCAGCTCTCCTGATCCTCCTAATCC
TCCAGATCCCTCAGTTCCTCCAGATCCTCCAGATGCGTCAGGTACTCCAG
ATGCTGCGGCTGTTTCTGTTTCTCCAGATCCAGCAGACCTCTCCCCTGTT
TCAGTATTTCCTGTTTGTTCAGTTCCTCCTGTTTTGTCCAATCCTTTGGT
GTCGTCTGTGTCTCCTGATCCCTCGGCTCGTACAGTTTCTTCAGAACCCC
CTGTTACTTCTTTCTTTGTACCGAAATCAGACATTATAAACTTATTCAAA
ACCTGCTTTTTCTGCGCCTGCATGGCACGCCACTCGTCGAGTGTATATTG
TTCGGTCTCCTCCGATGAATCGTACTCGTAGACGAAACTCGATACCTTTG
GTAACTTCATCCCTTCGAAGGTGCGCAAATTGGTCCTCTGACGCAAGTCG
ATCTCCTGCTGGATGGATCCCCAGTTGTGGGCCCCGGCTCCATTGCGTTT
TTCCACCGCCTTTACGCCAGTGCGTTTCGATCCGGAACGGCGATCAAAGA
GTCGGTCACCAGGACGATTGCGTCTGGTTTTGCAAAGTTTGTTTTTCGGT
ACTGTAACGAATACTGACTCTACTTCCTTCTCAAGAGGATCTGCCACCTT
GATGTCCTTCACCCGTTCCTTTTTGGGTGCAGTCAATGGAGTGGTCAAAG
TAATCTTGTTCTCCACCTTTGGCTGAAATAGACGTGCTGCCTTCTGTGTT
TTCTGCGACATCTTGGGAACGGCCACCATTGATGACTTCTTCTGTGACTT
TCTCATCT
BO14517.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15031-PA | 930 | CG15031-RA | 46..927 | 900..19 | 4360 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 1055 | CG15031-RA | 114..1003 | 908..19 | 4390 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15243911..15244800 | 19..908 | 4390 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:15:53 has no hits.
BO14517.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:19 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15031-PA | 38..930 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:04 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15031-PA | 38..930 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:09 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 114..1009 | 10..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:32 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 114..1009 | 10..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:32 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15243905..15244800 | 10..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:09 Download gff for
BO14517.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15137938..15138833 | 10..908 | 99 | | Plus |
BO14517.5prime Sequence
898 bp (799 high quality bases) assembled on 2006-05-29
> BO14517.5prime
GAAGTTATCAGTCGACATGAACGTACCACTCGTAGCCCTCACCAAGGATC
CCAAGATGAAGAAGTCACAGAAGAAGTCATCAATGGTGGCCGTTCCCAAG
ATGTCGCAGAAACCACAGAAGGCAGCACGTCTATTTCAGCCAAAGGTGGA
GAACAAGATTACTTTGACCACTCCATTGACTGCACCCAAAAAGGAACGGG
TGAAGGACATCAAGGTGGCAGATCCTCTTGAGAAGGAAGTAGAGTCAGTA
TTCGTTACAGTACCGAAAAACAAACTTTGCAAAACCAGACGCAATCGTCC
TGGTGACCGACTCTTTGATCGCCGTTCCGGATCGAAACGCACTGGCGTAA
AGGCGGTGGAAAAACGCAATGGAGCCGGGGCCCACAACTGGGGATCCATC
CAGCAGGAGATCGACTTGCGTCAGAGGACCAATTTGCGCACCTTCGAAGG
GATGAAGTTACCAAAGGTATCGAGTTTCGTCTACGAGTACGATTCATCGG
AGGAGACCGAACAATATACACTCGACGAGTGGCGTGCCATGCAGGCGCAG
AAAAAGCAGGTTTTGAATAAGTTTATAATGTCTGATTTCGGTACAAAGAA
AGAAGTAACAGGGGGTTCTGAAGAAACTGTACGAGCCGAGGGATCAGGAG
ACACAGACGACACCAAAGGATTGGACAAAACAGGAGGAACTGAACAAACA
GGAAATACTGAAACAGGGGAGAGGTCTGCTGGATCTGGAGAAACAGAAAC
AGCCGCAGCATCTGGAGTACCTGACGCATCTGGAGGATCTGGAGGAACTG
AGGGATCTGGAGGATTAGGAGGATCAGGAGAGCTGGAAGACGATGGCGAA
GAATAACCGCTGACCGCCCCGTGTACGTTGTTGATATCCTGTTAAATT
BO14517.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15031-PA | 930 | CG15031-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG15031-PA | 930 | CG15031-RA | 839..883 | 854..898 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 1055 | CG15031-RA | 77..959 | 17..898 | 4345 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15243955..15244837 | 898..17 | 4320 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:21:15 has no hits.
BO14517.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:20 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15031-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:05 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15031-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:22 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 73..959 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:49:49 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 73..959 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:49:49 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15243955..15244841 | 9..898 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:22 Download gff for
BO14517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15137988..15138874 | 9..898 | 99 | | Minus |
BO14517.complete Sequence
961 bp assembled on 2006-10-11
GenBank Submission: FJ633165
> BO14517.complete
GAAGTTATCAGTCGACATGAACGTACCACTCGTAGCCCTCACCAAGGATC
CCAAGATGAAGAAGTCACAGAAGAAGTCATCAATGGTGGCCGTTCCCAAG
ATGTCGCAGAAACCACAGAAGGCAGCACGTCTATTTCAGCCAAAGGTGGA
GAACAAGATTACTTTGACCACTCCATTGACTGCACCCAAAAAGGAACGGG
TGAAGGACATCAAGGTGGCAGATCCTCTTGAGAAGGAAGTAGAGTCAGTA
TTCGTTACAGTACCGAAAAACAAACTTTGCAAAACCAGACGCAATCGTCC
TGGTGACCGACTCTTTGATCGCCGTTCCGGATCGAAACGCACTGGCGTAA
AGGCGGTGGAAAAACGCAATGGAGCCGGGGCCCACAACTGGGGATCCATC
CAGCAGGAGATCGACTTGCGTCAGAGGACCAATTTGCGCACCTTCGAAGG
GATGAAGTTACCAAAGGTATCGAGTTTCGTCTACGAGTACGATTCATCGG
AGGAGACCGAACAATATACACTCGACGAGTGGCGTGCCATGCAGGCGCAG
AAAAAGCAGGTTTTGAATAAGTTTATAATGTCTGATTTCGGTACAAAGAA
AGAAGTAACAGGGGGTTCTGAAGAAACTGTACGAGCCGAGGGATCAGGAG
ACACAGACGACACCAAAGGATTGGACAAAACAGGAGGAACTGAACAAACA
GGAAATACTGAAACAGGGGAGAGGTCTGCTGGATCTGGAGAAACAGAAAC
AGCCGCAGCATCTGGAGTACCTGACGCATCTGGAGGATCTGGAGGAACTG
AGGGATCTGGAGGATTAGGAGGATCAGGAGAGCTGGAAGACGATGGCGAA
GAATTAACCGCTGACCGCCCGTTGTACGTTGTTGATATCCTGTTAAATTT
CAACACTGATCAAGGTGTTATTCCTTATCGCTTAAAATTCATTGCAAGCT
TTCTAGACCAT
BO14517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 930 | CG15031-PA | 1..927 | 17..943 | 4620 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-RA | 1055 | CG15031-RA | 77..1003 | 17..943 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15243911..15244837 | 943..17 | 4620 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:34 has no hits.
BO14517.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:12 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:05 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 73..1009 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:17 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1003 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:12 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 73..1009 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:05 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPYR1-RA | 77..1003 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:05 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15243909..15244837 | 17..945 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:17 Download gff for
BO14517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15137942..15138870 | 17..945 | 99 | | Minus |
BO14517.pep Sequence
Translation from 16 to 961
> BO14517.pep
MNVPLVALTKDPKMKKSQKKSSMVAVPKMSQKPQKAARLFQPKVENKITL
TTPLTAPKKERVKDIKVADPLEKEVESVFVTVPKNKLCKTRRNRPGDRLF
DRRSGSKRTGVKAVEKRNGAGAHNWGSIQQEIDLRQRTNLRTFEGMKLPK
VSSFVYEYDSSEETEQYTLDEWRAMQAQKKQVLNKFIMSDFGTKKEVTGG
SEETVRAEGSGDTDDTKGLDKTGGTEQTGNTETGERSAGSGETETAAASG
VPDASGGSGGTEGSGGLGGSGELEDDGEELTADRPLYVVDILLNFNTDQG
VIPYRLKFIASFLDH
BO14517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPYR1-PA | 309 | CG15031-PA | 1..309 | 1..309 | 1582 | 100 | Plus |
| vig-PB | 490 | CG4170-PB | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PA | 490 | CG4170-PA | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PC | 490 | CG4170-PC | 207..389 | 91..269 | 192 | 32.3 | Plus |
| vig-PD | 490 | CG4170-PD | 207..389 | 91..269 | 192 | 32.3 | Plus |
