Clone Sequence Records
BO14520.3prime Sequence
861 bp (764 high quality bases) assembled on 2006-05-29
> BO14520.3prime
ATGGTCTAGAAAGCTTGCGTTTTGATTGATGAATCCCTCGGCGTCCAGAA
GAACATTGGGGAAATACTTGATAATTTTGGTGAAGTGCGGGAATTTTTGC
GTGTTGGCGAATGTAATCTCATTGATCTCCTGATACTGCTTTAAAATCGT
GATGAGTTCATCGGGAGGCACTGCATCCGCCACCAGCCAGTGCTGGATGG
CGTAGTTTAGAGCATAGACCGGGAGTTTCATTAAACTGGGTTCGTGGATC
AATGATGCGCCTTCCTCTATGATTTTCTCGATGCAAACGCGCTCCACATC
GATGATGTTATGCCGGAATGCTAGGTCGAAGGCAGGAAAGATGCCATCCA
GAGGCAATTCCTGCTCCTTTAGTTTCTCAGCAAAGGAGCGAAGGAGCTCC
GGCATGTTGTACGCGCAGGACAGGATGAACATATCCCCCACCAGCTTCAG
CTGGACCAGCGGCGAGGTCACCTCGAAGGTGTATATGAACTCCAGGAAGA
TCTCCACGCTCTCGGGCGAAACCCCATTGATCTGGAGTACGCCGTTCCAG
TCCTTGTTCTGGTACACGTCCTGCTCCAGTTTGTCGGAGGCGGTGGCCAG
GAAGATCCGATGGCAGCCAAACTTCTTGTAGCACACACTGACCGCCGGCT
CATCGGATTGGGGGCAGTTGCTCAGGACGTGCACCTGGCAATCGGCATCG
GCTCCACTGCGAAAGTATTCCAGTCTGCGGTTTCTACTCGTAGCGCGTTT
GGACCCATCACTCGGAGAACCCAATGGTAAATTCTCCTCAACATCCGATG
CAGCTGTGGTTCTGGGCACAACGAGTCCCGGCCTCAAGTTCTGGATCCCT
CCCTGGTCGTT
BO14520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 939 | CG14262-RA | 94..936 | 861..19 | 4140 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 118..960 | 861..19 | 4170 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265313 | 277..861 | 2880 | 99.5 | Plus |
3R | 32079331 | 3R | 27264418..27264677 | 19..278 | 1300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:07:17 has no hits.
BO14520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:24 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 94..939 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:12 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 94..939 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:40 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 118..960 | 19..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:36:14 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 118..960 | 19..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:36:14 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264418..27264675 | 19..276 | 100 | <- | Plus |
3R | 27264729..27265313 | 277..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:40 Download gff for
BO14520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090140..23090397 | 19..276 | 100 | <- | Plus |
arm_3R | 23090451..23091035 | 277..861 | 99 | | Plus |
BO14520.5prime Sequence
883 bp (821 high quality bases) assembled on 2006-05-29
> BO14520.5prime
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGAGGAAGGCGCATCATTGATCCACGAACCCAGTTTAATGAAACTCCC
GGTCTATGCTCTAAACTACGCCATCCAGCACTGGCTGGTGGCGGATGCAG
TGCCTCCCGATGAACTCATCACGATTTTAAAGCAGTATCAGGAGATCAAT
GAAATTACATTCGCCAACACGCAAAAATTCCCG
BO14520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 939 | CG14262-RA | 1..867 | 17..883 | 4260 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 25..891 | 17..883 | 4290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265406 | 694..17 | 3360 | 99.7 | Minus |
3R | 32079331 | 3R | 27264487..27264677 | 883..693 | 940 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:04:36 has no hits.
BO14520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:25 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:13 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:56 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..891 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:03 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..891 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:03 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264487..27264675 | 695..883 | 99 | <- | Minus |
3R | 27264729..27265411 | 9..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:56 Download gff for
BO14520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090209..23090397 | 695..883 | 99 | <- | Minus |
arm_3R | 23090451..23091133 | 9..694 | 99 | | Minus |
BO14520.complete Sequence
970 bp assembled on 2006-10-11
GenBank Submission: FJ633166
> BO14520.complete
GAAGTTATCAGTCGACATGTCAGACTCTGAGAAGGAGGCCGCCGGCAAAG
CCCACCTGGGAAGCAACAATCGGTGGTCCGACCTGGAGGAGGAGGAGGAG
GGTGAGGCGAACGACCAGGGAGGGATCCAGAACTTGAGGCCGGAACTCGT
TGTGCCCAGAACCACAGCTGCATCGGATGTTGAGGAGAATTTACCATTGG
GTTCTCCGAGTGATGGGTCCAAACGCGCTACGAGTAGAAACCGCAGACTG
GAATACTTTCGCAGTGGAGCCGATGCCGATTGCCAGGTGCACGTCCTGAG
CAACTGCCCCCAATCCGATGAGCCGGCGGTCAGTGTGTGCTACAAGAAGT
TTGGCTGCCATCGGATCTTCCTGGCCACCGCCTCCGACAAACTGGAGCAG
GACGTGTACCAGAACAAGGACTGGAACGGCGTACTCCAGATCAATGGGGT
TTCGCCCGAGAGCGTGGAGATCTTCCTGGAGTTCATATACACCTTCGAGG
TGACCTCGCCGCTGGTCCAGCTGAAGCTGGTGGGGGATATGTTCATCCTG
TCCTGCGCGTACAACATGCCGGAGCTCCTTCGCTCCTTTGCTGAGAAACT
AAAGGAGCAGGAATTGCCTCTGGATGGCATCTTTCCTGCCTTCGACCTAG
CATTCCGGCATAACATCATCGATGTGGAGCGCGTTTGCATCGAGAAAATC
ATAGAGGAAGGCGCATCATTGATCCACGAACCCAGTTTAATGAAACTCCC
GGTCTATGCTCTAAACTACGCCATCCAGCACTGGCTGGTGGCGGATGCAG
TGCCTCCCGATGAACTCATCACGATTTTAAAGCAGTATCAGGAGATCAAT
GAGATTACATTCGCCAACACGCAAAAATTCCCGCACTTCACCAAAATTAT
CAAGTATTTCCCCAATGTTCTTCTGGACGCCGAGGGATTCATCAATCAAA
ACGCAAGCTTTCTAGACCAT
BO14520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 939 | CG14262-PA | 1..936 | 17..952 | 4650 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-RA | 1004 | CG14262-RA | 25..960 | 17..952 | 4650 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27264729..27265406 | 694..17 | 3360 | 99.7 | Minus |
3R | 32079331 | 3R | 27264418..27264677 | 952..693 | 1300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:02 has no hits.
BO14520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:16 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 1..939 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:07 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..960 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:26 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 25..960 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:17 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 20..960 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:59 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14262-RA | 25..960 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:59 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27264416..27264675 | 695..954 | 99 | <- | Minus |
3R | 27264729..27265406 | 17..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:26 Download gff for
BO14520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23090138..23090397 | 695..954 | 99 | <- | Minus |
arm_3R | 23090451..23091128 | 17..694 | 99 | | Minus |
BO14520.pep Sequence
Translation from 16 to 970
> BO14520.pep
MSDSEKEAAGKAHLGSNNRWSDLEEEEEGEANDQGGIQNLRPELVVPRTT
AASDVEENLPLGSPSDGSKRATSRNRRLEYFRSGADADCQVHVLSNCPQS
DEPAVSVCYKKFGCHRIFLATASDKLEQDVYQNKDWNGVLQINGVSPESV
EIFLEFIYTFEVTSPLVQLKLVGDMFILSCAYNMPELLRSFAEKLKEQEL
PLDGIFPAFDLAFRHNIIDVERVCIEKIIEEGASLIHEPSLMKLPVYALN
YAIQHWLVADAVPPDELITILKQYQEINEITFANTQKFPHFTKIIKYFPN
VLLDAEGFINQNASFLDH
BO14520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14262-PA | 312 | CG14262-PA | 1..312 | 1..312 | 1626 | 100 | Plus |
CG14260-PA | 249 | CG14260-PA | 6..237 | 76..309 | 262 | 29.6 | Plus |
CG14260-PB | 166 | CG14260-PB | 6..144 | 76..216 | 178 | 31.5 | Plus |