Clone Sequence Records
BO14523.complete Sequence
2185 bp assembled on 2010-04-13
GenBank Submission: KX796849
> BO14523.complete
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATC
AAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCCCATCAAGCTGCTCGTAGAGA
AGGAGCGCGAGAAGGAGGTCAGCGACGATGAGGCTGATGATGAGAAGAAG
GAAGGTGATGAGAAGAAGGAGATGGAGACTGATGAGCCCAAAATCGAGGA
TGTTGGCGAGGATGAGGATGCCGACAAGAAGGACAAGGATGCCAAGAAGA
AGAAGACCATCAAGGAGAAGTACACTGAGGATGAGGAGCTGAACAAGACC
AAGCCCATCTGGACCCGCAATCCCGATGATATCTCCCAGGAGGAGTACGG
CGAGTTCTACAAATCCCTGACCAACGACTGGGAGGATCATCTGGCCGTCA
AGCACTTCTCCGTGGAGGGTCAGCTGGAGTTCCGTGCTCTGCTCTTCATT
CCCCGTCGCACGCCCTTCGATCTCTTTGAGAACCAGAAGAAGCGCAACAA
CATCAAGCTGTACGTGCGTCGTGTCTTCATCATGGACAACTGCGAGGACC
TCATTCCAGAGTACTTGAACTTCATGAAGGGTGTGGTCGACTCCGAGGAT
CTGCCCCTCAACATCTCACGTGAGATGCTGCAGCAGAACAAGGTCCTAAA
GGTGATCCGCAAGAACCTGGTCAAGAAGACCATGGAGCTGATTGAGGAGC
TCACCGAGGACAAGGAGAACTACAAGAAGTTCTATGACCAGTTCAGCAAG
AACCTGAAGCTGGGTGTGCACGAGGACAGCAACAACCGTGCCAAGTTGGC
CGACTTCCTTCGCTTCCACACCTCTGCCTCCGGCGACGATTTCTGCTCCC
TGGCCGACTACGTGTCGCGCATGAAGGATAACCAGAAGCACGTGTACTTC
ATCACTGGCGAGTCCAAGGACCAGGTCAGCAACTCTGCCTTCGTGGAGCG
CGTCAAGGCCCGTGGCTTCGAGGTGGTCTACATGACCGAGCCCATCGATG
AGTATGTCATCCAGCACTTGAAGGAGTACAAGGGCAAGCAGCTGGTCTCT
GTCACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGAGCGAGAAGAAGAA
GCGCGAGGAGGACAAGGCCAAGTTCGAGAGCCTGTGCAAGCTGATGAAGT
CCATCCTGGACAACAAGGTCGAGAAGGTGGTGGTGTCCAACCGCCTGGTG
GATTCGCCCTGCTGCATTGTCACTTCGCAGTTCGGCTGGTCCGCTAACAT
GGAGCGCATCATGAAGGCCCAGGCTCTGCGTGATACCGCCACAATGGGCT
ACATGGCCGGCAAGAAGCAGCTGGAGATCAACCCCGATCACCCAATTGTG
GAGACTCTCCGCCAGAAGGCCGATGCCGACAAGAACGATAAGGCCGTCAA
GGATCTGGTCATCCTGCTGTTCGAGACCTCTCTGCTGTCCTCTGGATTCT
CGCTGGACAGCCCCCAGGTGCACGCCAGCCGCATCTACCGCATGATCAAG
CTGGGCTTGGGAATCGACGAGGACGAGCCTATGACTACCGACGATGCCCA
GAGCGCCGGAGATGCCCCCTCGCTGGTTGAGGACACCGAGGACGCTTCCC
ACATGGAGGAGGTCGATGCAAGCTTTCTAGACCAT
BO14523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-RB | 2154 | CG1242-PB | 1..2151 | 17..2167 | 10710 | 99.9 | Plus |
| Hsp83-RA | 2154 | CG1242-PA | 1..2151 | 17..2167 | 10710 | 99.9 | Plus |
| Gp93-RA | 2364 | CG5520-PA | 1217..1392 | 1047..1222 | 265 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-RB | 2960 | CG1242-RB | 400..2550 | 17..2167 | 10710 | 99.9 | Plus |
| Hsp83-RA | 2713 | CG1242-RA | 153..2303 | 17..2167 | 10710 | 99.9 | Plus |
| Gp93-RA | 2841 | CG5520-RA | 1368..1543 | 1047..1222 | 265 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3194499..3196649 | 17..2167 | 10710 | 99.9 | Plus |
| Y | 3667352 | Y | 1974862..1975027 | 604..769 | 830 | 100 | Plus |
| Y | 3667352 | Y | 1945382..1945547 | 604..769 | 815 | 99.4 | Plus |
| Y | 3667352 | Y | 1959892..1960057 | 604..769 | 815 | 99.4 | Plus |
| Y | 3667352 | Y | 1967986..1968151 | 604..769 | 815 | 99.4 | Plus |
| U | 3151297 | U | 1163245..1163385 | 744..604 | 690 | 99.3 | Minus |
| Y | 3667352 | Y | 1959696..1959750 | 71..17 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1974666..1974720 | 71..17 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1945186..1945239 | 71..18 | 270 | 100 | Minus |
| Y | 3667352 | Y | 1967790..1967843 | 71..18 | 270 | 100 | Minus |
| U | 3151297 | U | 1163528..1163581 | 18..71 | 270 | 100 | Plus |
| 3R | 32079331 | 3R | 27950345..27950520 | 1047..1222 | 265 | 76.7 | Plus |
| 3R | 32079331 | 3R | 27949411..27949473 | 98..160 | 195 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:59:03 has no hits.
BO14523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:20 Download gff for
BO14523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 342..2492 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:33 Download gff for
BO14523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 153..2303 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:58 Download gff for
BO14523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 153..2303 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:58 Download gff for
BO14523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3194499..3196649 | 17..2169 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:33 Download gff for
BO14523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3194499..3196649 | 17..2169 | 99 | | Plus |
BO14523.3prime Sequence
811 bp (787 high quality bases) assembled on 2006-05-29
> BO14523.3prime
ATGGTCTAGAAAGCTTGCATCGACCTCCTCCATGTGGGAAGCGTCCTCGG
TGTCCTCAACCAGCGAGGGGGCATCTCCGGCGCTCTGGGCATCGTCGGTA
GTCATAGGCTCGTCCTCGTCGATTCCCAAGCCCAGCTTGATCATGCGGTA
GATGCGGCTGGCGTGCACCTGGGGGCTGTCCAGCGAGAATCCAGAGGACA
GCAGAGAGGTCTCGAACAGCAGGATGACCAGATCCTTGACGGCCTTATCG
TTCTTGTCGGCATCGGCCTTCTGGCGGAGAGTCTCCACAATTGGGTGATC
GGGGTTGATCTCCAGCTGCTTCTTGCCGGCCATGTAGCCCATTGTGGCGG
TATCACGCAGAGCCTGGGCCTTCATGATGCGCTCCATGTTAGCGGACCAG
CCGAACTGCGAAGTGACAATGCAGCAGGGCGAATCCACCAGGCGGTTGGA
CACCACCACCTTCTCGACCTTGTTGTCCAGGATGGACTTCATCAGCTTGC
ACAGGCTCTCGAACTTGGCCTTGTCCTCCTCGCGCTTCTTCTTCTCGCTC
TCATCCTCAGGCAGCTCCAGACCCTCCTTGGTGACAGAGACCAGCTGCTT
GCCCTTGTACTCCTTCAAGTGCTGGATGACATACTCATCGATGGGCTCGG
TCATGTAGACCACCTCGAAGCCACGGGCCTTGACGCGCTCCACGAAGGCA
GAGTTGCTGACCTGGTCCTTGGACTCGCCAGTGATGAAGTACACGTGCTT
CTGGTTATCCTTCATGCGCGACACGTAGTCGGCCAGGGAGCAAAAATCGT
CGCCGGAGGCA
BO14523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1242-PA | 2154 | Hsp83-RA | 1359..2151 | 811..19 | 3915 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-RB | 2960 | CG1242-RB | 1758..2550 | 811..19 | 3935 | 99.7 | Minus |
| Hsp83-RA | 2713 | CG1242-RA | 1511..2303 | 811..19 | 3935 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3195857..3196649 | 811..19 | 3935 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:50:03 has no hits.
BO14523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:31 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-PA | 1360..2154 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:20 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1242-PA | 1360..2154 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:36 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 1512..2308 | 13..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:24 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 1512..2308 | 13..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:24 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3195858..3196654 | 13..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:36 Download gff for
BO14523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3195858..3196654 | 13..810 | 99 | | Minus |
BO14523.5prime Sequence
797 bp (693 high quality bases) assembled on 2006-05-29
> BO14523.5prime
GAAGTTATCAGTCGACATGCCAGAAGAAGCAGAGACCTTTGCATTCCAGG
CTGAGATTGCTCAGCTGATGTCCCTGATCATCAACACATTCTACTCGAAC
AAGGAGATTTTCCTGCGCGAGTTGATCTCGAACGCTTCCGATGCCCTGGA
CAAGATCCGCTATGAGTCCCTTACTGACCCCAGCAAGCTGGACTCTGGCA
AGGAGCTGTACATCAAGCTGATCCCTAACAAGACGGCTGGTACTCTGACC
ATCATTGATACCGGTATCGGTATGACCAAGTCCGACCTGGTCAACAACTT
GGGAACCATCGCCAAGTCCGGAACCAAGGCCTTCATGGAGGCTCTGCAGG
CTGGTGCCGACATTTCCATGATCGGTCAGTTCGGTGTGGGTTTCTACTCC
GCCTACCTGGTCGCCGACAAGGTGACTGTCACCTCCAAGAACAACGATGA
CGAGCAGTACGTGTGGGAGTCCTCTGCCGGAGGCTCTTTCACAGTCCGTG
CCGACAACTCTGAGCCCCTGGGCCGTGGCACCAAGATCGTGCTGTACATC
AAGGAGGACCAGACCGACTATCTGGAGGAGAGCAAGATCAAGGAGATTGT
TAACAAGCACTCCCAGTTCATTGGCTACCCCATCAAGCTGCTCGTAGAGA
AGGAGCGCGAGAAGGAGGTCAGCGACGATGAGGCTGATGATGAGAAGAAG
GAAGGTGATGAGAAGAAGGAGATGGAGACTGATGAGCCCCAAATCGAAGA
TGTTGGCGAGGATGAGGATGCCGACAAGAAGGACAAGGATGCCAAAA
BO14523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1242-PA | 2154 | Hsp83-RA | 1..779 | 17..795 | 3820 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-RB | 2960 | CG1242-RB | 400..1178 | 17..795 | 3850 | 99.6 | Plus |
| Hsp83-RA | 2713 | CG1242-RA | 153..931 | 17..795 | 3850 | 99.6 | Plus |
| Gp93-RA | 2841 | CG5520-RA | 434..496 | 98..160 | 195 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3194499..3195277 | 17..795 | 3850 | 99.6 | Plus |
| Y | 3667352 | Y | 1974862..1975027 | 604..769 | 800 | 98.8 | Plus |
| Y | 3667352 | Y | 1967986..1968151 | 604..769 | 785 | 98.2 | Plus |
| Y | 3667352 | Y | 1945382..1945547 | 604..769 | 785 | 98.2 | Plus |
| Y | 3667352 | Y | 1959892..1960057 | 604..769 | 785 | 98.2 | Plus |
| U | 3151297 | U | 1163245..1163385 | 744..604 | 675 | 98.6 | Minus |
| Y | 3667352 | Y | 1959696..1959750 | 71..17 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1974666..1974720 | 71..17 | 275 | 100 | Minus |
| Y | 3667352 | Y | 1945186..1945239 | 71..18 | 270 | 100 | Minus |
| Y | 3667352 | Y | 1967790..1967843 | 71..18 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:59:42 has no hits.
BO14523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:32 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:21 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1242-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:51 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 145..929 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:39 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp83-RA | 145..929 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:39 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3194499..3195275 | 17..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:51 Download gff for
BO14523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3194499..3195275 | 17..793 | 99 | | Plus |
BO14523.pep Sequence
Translation from 16 to 2185
> BO14523.pep
MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYE
SLTDPSKLDSGKELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAK
SGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKNNDDEQYVW
ESSAGGSFTVRADNSEPLGRGTKIVLYIKEDQTDYLEESKIKEIVNKHSQ
FIGYPIKLLVEKEREKEVSDDEADDEKKEGDEKKEMETDEPKIEDVGEDE
DADKKDKDAKKKKTIKEKYTEDEELNKTKPIWTRNPDDISQEEYGEFYKS
LTNDWEDHLAVKHFSVEGQLEFRALLFIPRRTPFDLFENQKKRNNIKLYV
RRVFIMDNCEDLIPEYLNFMKGVVDSEDLPLNISREMLQQNKVLKVIRKN
LVKKTMELIEELTEDKENYKKFYDQFSKNLKLGVHEDSNNRAKLADFLRF
HTSASGDDFCSLADYVSRMKDNQKHVYFITGESKDQVSNSAFVERVKARG
FEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDESEKKKREEDK
AKFESLCKLMKSILDNKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMK
AQALRDTATMGYMAGKKQLEINPDHPIVETLRQKADADKNDKAVKDLVIL
LFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDA
PSLVEDTEDASHMEEVDASFLDH
BO14523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp83-PB | 717 | CG1242-PB | 1..717 | 1..717 | 3664 | 100 | Plus |
| Hsp83-PA | 717 | CG1242-PA | 1..717 | 1..717 | 3664 | 100 | Plus |
| Gp93-PA | 787 | CG5520-PA | 70..777 | 3..715 | 1575 | 45.3 | Plus |
| Trap1-PB | 691 | CG3152-PB | 68..672 | 10..664 | 777 | 30.6 | Plus |
| Trap1-PA | 691 | CG3152-PA | 68..672 | 10..664 | 777 | 30.6 | Plus |
