Clone Sequence Records
BO14524.3prime Sequence
765 bp (764 high quality bases) assembled on 2006-05-29
> BO14524.3prime
ATGGTCTAGAAAGCTTGCGTTGCGACGTCCGCCACGACGACGACGGCGCA
TGAGGCGCACGAGCCGGCGACGCTGCTGCTGGCGGTGTCTGCGCTGGCGC
TGCTGCTGCTGGCGGCGACGACGGTTCATGTTGTTCCTCCTCTGGCGCTG
GCGCTGGGCCTTGGAACGGTTCCTGTTGCGGCGCTGGCGCTGTGAGACGC
GCTTACGGCTCTGTTGGCGCTGGCGGCGCAAGCGTTGCTGGCTTCGCTTC
TCGGCGGCCCTCTGGCGGCGAAGGAGGGACCTGATCCGCTGGTTGTGCTC
ACGCTGGAGGCGCTGGATTCGGCGACGGTTGCGCTGTTCCTGCTGGAACT
GGCGCCACTGGAGTTCCGAGGGGCGGACCAACGAGCCGGACTCTGAGGAC
TGCTGCACGGCATTGCTATTGCCACCGGCGGAAGGAGCGGCCACAAAGTA
GCTCTCCTCATCGTCGTCATCATCTTCGTCCTCCAGGCTGTCGTCACCTT
CGTCTTCTTCATCTTCAAACGCCCTGGGCATCTCCTCATCATCTTCCTCA
ACATCGTCTTGAATTGCGGGGAAGGCACGACCGGTGGTGGTGTCGGAGGT
TGTGGGCGTGGTGGTGCTCGTCGAGGTGCCAGTGGACGTTGTTGGTGCAG
TCGGCGTGGTCGTCTCCGTAGTGGAGGTGGGCGTGGTGGTGGTAGTGGGG
GCAACCGTGGTCGTCGTGGTGGTGCCCTTCAGCGAGGTCAGCTTGTTGGC
AATCGACGATGTGAA
BO14524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-PA | 882 | CG14420-RA | 133..879 | 765..19 | 3535 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-RA | 1570 | CG14420-RA | 760..1506 | 765..19 | 3615 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2939717..2940463 | 765..19 | 3615 | 98.9 | Minus |
Blast to na_te.dros performed 2015-01-30 18:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 490..461 | 114 | 86.7 | Minus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 543..500 | 111 | 74.5 | Minus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 543..500 | 111 | 74.5 | Minus |
BO14524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:33 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-PA | 135..882 | 15..763 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:22 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-PA | 135..882 | 15..763 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:35 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 760..1510 | 14..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:22 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 760..1510 | 14..765 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:22 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2939717..2940467 | 14..765 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:35 Download gff for
BO14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2833750..2834500 | 14..765 | 98 | | Minus |
BO14524.5prime Sequence
771 bp (769 high quality bases) assembled on 2006-05-29
> BO14524.5prime
GAAGTTATCAGTCGACATGCATTGCCTGCTTCAACTGAGTCTGGCTGTGG
CCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTGGCCGAACGCCGCAAT
GTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCAGATGGAGGCCCGCTT
CACATCGTCGATTGCCAACAAGCTGACCTCGCTGAAGGGCACCACCACGA
CGACCACGGTTGCCCCCACTACCACCACCACGCCCACCTCCACTACGGAG
ACGACCACGCCGACTGCACCAACAACGTCCACTGGCACCTCGACGAGCAC
CACCACGCCCACAACCTCCGACACCACCACCGGTCGTGCCTTCCCCGCAA
TTCAAGACGATGTTGAGGAAGATGATGAGGAGATGCCCAGGGCGTTTGAA
GATGAAGAAGACGAAGGTGACGACAGCCTGGAGGACGAAGATGATGACGA
CGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCGCCGGTGGCAATAGCA
ATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTGGTCCGCCCCTCGGAA
CTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAACCGTCGCCGAATCCA
GCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGTCCCTCCTTCGCCGCC
AGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTGCGCCGCCAGCGCCAA
CAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCGCAACAGGAACCGTTC
CAAGGCCCAGCGCCAGCGCCA
BO14524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-PA | 882 | CG14420-RA | 1..755 | 17..771 | 3625 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-RA | 1570 | CG14420-RA | 628..1382 | 17..771 | 3685 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2939654..2940339 | 86..771 | 3340 | 99.1 | Plus |
X | 23542271 | X | 2939483..2939552 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 424..453 | 114 | 86.7 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 371..414 | 111 | 74.5 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 371..414 | 111 | 74.5 | Plus |
BO14524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:34 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:23 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:31 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 619..1381 | 7..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:47 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 619..1381 | 7..770 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:47 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2939474..2939552 | 7..86 | 95 | -> | Plus |
X | 2939655..2940338 | 87..770 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:31 Download gff for
BO14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2833507..2833585 | 7..86 | 95 | -> | Plus |
arm_X | 2833688..2834371 | 87..770 | 99 | | Plus |
BO14524.complete Sequence
913 bp assembled on 2006-10-11
GenBank Submission: FJ633167
> BO14524.complete
GAAGTTATCAGTCGACATGCATTGCCTGCTTCAACTGAGTCTGGCTGTGG
CCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTGGCCGAACGCCGCAAT
GTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCAGATGGAGGCCCGCTT
CACATCGTCGATTGCCAACAAGCTGACCTCGCTGAAGGGCACCACCACGA
CGACCACGGTTGCCCCCACTACCACCACCACGCCCACCTCCACTACGGAG
ACGACCACGCCGACTGCACCAACAACGTCCACTGGCACCTCGACGAGCAC
CACCACGCCCACAACCTCCGACACCACCACCGGTCGTGCCTTCCCCGCAA
TTCAAGACGATGTTGAGGAAGATGATGAGGAGATGCCCAGGGCGTTTGAA
GATGAAGAAGACGAAGGTGACGACAGCCTGGAGGACGAAGATGATGACGA
CGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCGCCGGTGGCAATAGCA
ATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTGGTCCGCCCCTCGGAA
CTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAACCGTCGCCGAATCCA
GCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGTCCCTCCTTCGCCGCC
AGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTGCGCCGCCAGCGCCAA
CAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCGCAACAGGAACCGTTC
CAAGGCCCAGCGCCAGCGCCAGAGGAGGAACAACATGAACCGTCGTCGCC
GCCAGCAGCAGCAGCGCCAGCGCAGACACCGCCAGCAGCAGCGTCGCCGG
CTCGTGCGCCTCATGCGCCGTCGTCGTCGTGGCGGACGTCGCAACGCAAG
CTTTCTAGACCAT
BO14524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-RA | 882 | CG14420-PA | 1..879 | 17..895 | 4275 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-RA | 1570 | CG14420-RA | 628..1506 | 17..895 | 4275 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2939654..2940463 | 86..895 | 3930 | 99 | Plus |
X | 23542271 | X | 2939483..2939552 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 567..596 | 424..453 | 114 | 86.7 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4768..4814 | 371..414 | 111 | 74.5 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2637..2683 | 371..414 | 111 | 74.5 | Plus |
BO14524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:21 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 1..882 | 17..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:10 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 619..1510 | 7..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:37 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 628..1506 | 17..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:22 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 619..1510 | 7..900 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:01 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14420-RA | 628..1506 | 17..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:01 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2939483..2939552 | 17..86 | 100 | -> | Plus |
X | 2939655..2940463 | 87..897 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:37 Download gff for
BO14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2833516..2833585 | 17..86 | 100 | -> | Plus |
arm_X | 2833688..2834496 | 87..897 | 98 | | Plus |
BO14524.pep Sequence
Translation from 16 to 913
> BO14524.pep
MHCLLQLSLAVALCALLAPSTTLAERRNVYRLGGRASDAQMEARFTSSIA
NKLTSLKGTTTTTTVAPTTTTTPTSTTETTTPTAPTTSTGTSTSTTTPTT
SDTTTGRAFPAIQDDVEEDDEEMPRAFEDEEDEGDDSLEDEDDDDDEESY
FVAAPSAGGNSNAVQQSSESGSLVRPSELQWRQFQQEQRNRRRIQRLQRE
HNQRIRSLLRRQRAAEKRSQQRLRRQRQQSRKRVSQRQRRNRNRSKAQRQ
RQRRNNMNRRRRQQQQRQRRHRQQQRRRLVRLMRRRRRGGRRNASFLDH
BO14524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14420-PA | 293 | CG14420-PA | 1..293 | 1..293 | 1477 | 100 | Plus |
CG14422-PA | 294 | CG14422-PA | 8..294 | 4..293 | 350 | 34 | Plus |
CG14421-PA | 238 | CG14421-PA | 1..232 | 1..272 | 342 | 34.8 | Plus |
CG14418-PB | 284 | CG14418-PB | 124..277 | 130..292 | 183 | 31.2 | Plus |
CG14418-PA | 327 | CG14418-PA | 167..320 | 130..292 | 183 | 31.2 | Plus |
CG14418-PB | 284 | CG14418-PB | 102..266 | 164..291 | 151 | 30.3 | Plus |