Clone Sequence Records
BO14525.3prime Sequence
868 bp (780 high quality bases) assembled on 2006-05-29
> BO14525.3prime
ATGGTCTAGAAAGCTTGCGGACTTTAAGGGCTTGTACATCATGAGACGCC
GACGAACACATCCGATGGCCTCTTCCCAGCTGTTCGAGGACAGCAGATCC
TCATCCTTGGCCAAACGCTTTGCCTTGGAGGCGATGCCTTTGCGTTTGAT
CGTCTTCTTTTTCGTCAGCTTGGAAATTCCGGTTGGCAGTTTATCCGGTT
GCGATTTGCCGGCTTCAACCGTTTCGGGTTTCTTGGTTCGATTGCATTTA
CCCGGATTCCGTAACCGTAAGCTCTTCTTCATGTCCACACTGGCCATTGA
CAGAATCTGCTGAATGGATCGAACACGCGTAACGGCCGGTGGCGTAAAAC
TACGTATCCGTCGACCGGATGATGGTGATACCCTGGAAAATTTACGATTC
GGCTCCGGTGGCACGCGCATAGCTGCCTCCTTGGGCGGCAGATCCAATAG
ATTGTCGTACTTGGGACGACGCTCATTCAGCTGCGTCTTTAGACGGGACA
ACTTGGGCGGCGGCTTGTAGGACTCCAGGGTGTAGCGGGTGCTCTGCTTG
TTGCCACCCACCGAGGAGCGGCCCAGGGACCACAGACCCTTGCTCTCCTT
CTGGAATGCTCGGTAGATCAGGTGACGTGGAACAGGTATCGGTAGTTCTG
CGTGACGTTGCGAATCGTATAGCTCACGCTGTCGCATGCTAAGTCCTGGC
CAAGTTAATGCCGCTCGTTCCAGACCCTCGTCGATGCTGCAATTGTGCAT
GATGCACAATTCGCGAACGCAGTTGTAGAACTGAAGCGGACTGGCATCGC
GGGGCTTGAAGCGGCTCAATGCTTTGATGAGGCGGGCACGCTGCTCCCGT
TTTTGGTCCTCCGTGGAC
BO14525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 900 | CG11068-RA | 48..897 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 233..1082 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956386 | 661..19 | 3215 | 100 | Minus |
X | 23542271 | X | 13955468..13955675 | 868..661 | 1040 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2777..2803 | 681..655 | 108 | 88.9 | Minus |
BO14525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:34 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 48..900 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:25 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 48..900 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:24 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 218..1070 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:51:47 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 233..1085 | 15..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:51:47 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955468..13955675 | 661..868 | 100 | -> | Minus |
X | 13955745..13956389 | 15..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:24 Download gff for
BO14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849501..13849708 | 661..868 | 100 | -> | Minus |
arm_X | 13849778..13850422 | 15..660 | 99 | | Minus |
BO14525.5prime Sequence
933 bp (772 high quality bases) assembled on 2006-05-29
> BO14525.5prime
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGCCAAGGATGAGGATCTGCTGTCCTCGAAC
AGCTGGGAAGAGGCCATCGGATGTGTTCGTCGGCGTCTCATGATGTACAA
GCCCTTAAAGTCCGCAAGCTTTCTAGACCATTC
BO14525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 900 | CG11068-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 186..1082 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956386 | 271..913 | 3215 | 100 | Plus |
X | 23542271 | X | 13955421..13955675 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:53:39 has no hits.
BO14525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:35 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:26 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:14 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..1070 | 8..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:55 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 181..1085 | 8..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:55 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955416..13955675 | 8..271 | 98 | -> | Plus |
X | 13955745..13956389 | 272..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:14 Download gff for
BO14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849449..13849708 | 8..271 | 98 | -> | Plus |
arm_X | 13849778..13850422 | 272..917 | 99 | | Plus |
BO14525.complete Sequence
931 bp assembled on 2006-10-11
GenBank Submission: FJ633168
> BO14525.complete
GAAGTTATCAGTCGACATGGCCAAGGATCAAGAGGGAAACACATATCAAC
CAACCGTCCCGGAGTCCACGGAGGACCAAAAACGGGAGCAGCGTGCCCGC
CTCATCAAAGCATTGAGCCGCTTCAAGCCCCGCGATGCCAGTCCGCTTCA
GTTCTACAACTGCGTTCGCGAATTGTGCATCATGCACAATTGCAGCATCG
ACGAGGGTCTGGAACGAGCGGCATTAACTTGGCCAGGACTTAGCATGCGA
CAGCGTGAGCTATACGATTCGCAACGTCACGCAGAACTACCGATACCTGT
TCCACGTCACCTGATCTACCGAGCATTCCAGAAGGAGAGCAAGGGTCTGT
GGTCCCTGGGCCGCTCCTCGGTGGGTGGCAACAAGCAGAGCACCCGCTAC
ACCCTGGAGTCCTACAAGCCGCCGCCCAAGTTGTCCCGTCTAAAGACGCA
GCTGAATGAGCGTCGTCCCAAGTACGACAATCTATTGGATCTGCCGCCCA
AGGAGGCAGCTATGCGCGTGCCACCGGAGCCGAATCGTAAATTTTCCAGG
GTATCACCATCATCCGGTCGACGGATACGTAGTTTTACGCCACCGGCCGT
TACGCGTGTTCGATCCATTCAGCAGATTCTGTCAATGGCCAGTGTGGACA
TGAAGAAGAGCTTACGGTTACGGAATCCGGGTAAATGCAATCGAACCAAG
AAACCCGAAACGGTTGAAGCCGGCAAATCGCAACCGGATAAACTGCCAAC
CGGAATTTCCAAGCTGACGAAAAAGAAGACGATCAAACGCAAAGGCATCG
CCTCCAAGGCAAAGCGTTTGGCCAAGGATGAGGATCTGCTGTCCTCGAAC
AGCTGGGAAGAGGCCATCGGATGTGTTCGTCGGCGTCTCATGATGTACAA
GCCCTTAAAGTCCGCAAGCTTTCTAGACCAT
BO14525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 900 | CG11068-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-RA | 1270 | CG11068-RA | 186..1082 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13955744..13956386 | 271..913 | 3215 | 100 | Plus |
X | 23542271 | X | 13955421..13955675 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2777..2803 | 251..277 | 108 | 88.9 | Plus |
BO14525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:24 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:11 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..1070 | 8..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:50 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 171..1067 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:24 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 166..1070 | 8..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:17 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11068-RA | 186..1082 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:17 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13955421..13955675 | 17..271 | 100 | -> | Plus |
X | 13955745..13956386 | 272..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:50 Download gff for
BO14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13849454..13849708 | 17..271 | 100 | -> | Plus |
arm_X | 13849778..13850419 | 272..915 | 99 | | Plus |
BO14525.pep Sequence
Translation from 16 to 931
> BO14525.pep
MAKDQEGNTYQPTVPESTEDQKREQRARLIKALSRFKPRDASPLQFYNCV
RELCIMHNCSIDEGLERAALTWPGLSMRQRELYDSQRHAELPIPVPRHLI
YRAFQKESKGLWSLGRSSVGGNKQSTRYTLESYKPPPKLSRLKTQLNERR
PKYDNLLDLPPKEAAMRVPPEPNRKFSRVSPSSGRRIRSFTPPAVTRVRS
IQQILSMASVDMKKSLRLRNPGKCNRTKKPETVEAGKSQPDKLPTGISKL
TKKKTIKRKGIASKAKRLAKDEDLLSSNSWEEAIGCVRRRLMMYKPLKSA
SFLDH
BO14525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11068-PA | 299 | CG11068-PA | 1..299 | 1..299 | 1549 | 100 | Plus |