Clone Sequence Records
BO14528.3prime Sequence
835 bp (749 high quality bases) assembled on 2006-05-29
> BO14528.3prime
ATGGTCTAGAAAGCTTGCGCCGCAATAGATTTCGGTGAATACGGGAATGC
GGCAATAGCAGGTGCAGTTCTCGAACTCATTTGCATATTGCGATATTTCA
GCAACGAACCTCTCCAAATTTTGCGGGTTTTTGAATATGTTCTTGTCCAC
AGTCAAATCGTTGTCCACCAGGATTTTCCAGCGTCTCATACTGGCGATGA
CATCGCCGCAGAAGTCGCGTTTACTCTTCTCCGCCGATTTCTTGATGTTC
TGCATAAGCCCCTTGTGCTTTCTGTACGCCCTATTCTTTTCGACCAACGC
CGCATGGGCTTCTCTCTGTGAAGCATCGTAAATCTCGATGATTCTGTACA
TGCGCCTTTCAATATTCTTGGACATTTTCAGGGCGGCCTCGCACTTTGGC
TTGCATTGGCTCCAATAGCGGGCTCCTTCGAATGGGACTTTGCTGAACTT
GTTGCTCCTCTTGAAAGTTTCCGTATCCTTTCCTCGATCGGCCAGTTCTT
TAGCCAGTTGCGTCTTAACCCTTCCATTGTGGAAGCGAAAATGCAAGCTG
GCCAGCAGCTTCTCTACTCGCGACATGCAGTTTGAGTTCTTGAGCGAATA
TACACCTGGAATCGCGAAGGTGCGGAGCAGGTGGTGCAGCTTGAAGGCCA
CGCAATTGAGCAGATCCTCGGCGGCGCACACCTGCTTCCTGAGCAATTTG
CTGTGATCGTGAATGGTGCGCCGGCTCTTCCATCCTCGGAATAGGGCCTG
GATCTTGGTGGCCGCCCGATGGTGGTGATCCTGAACCCGCTTCTGCAGCA
GGTTCTCCACATACCTGAAGTGGTTTTTTCGGACC
BO14528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 1104 | CG13544-RA | 285..1101 | 835..19 | 3935 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 384..1200 | 835..19 | 3995 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139452..23139765 | 267..580 | 1525 | 99 | Plus |
2R | 25286936 | 2R | 23139820..23140074 | 581..835 | 1245 | 99.2 | Plus |
2R | 25286936 | 2R | 23139142..23139395 | 19..272 | 1240 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:44:31 has no hits.
BO14528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:41 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 285..1104 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:35 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 285..1104 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:19 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 384..1203 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:20 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 384..1203 | 15..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:20 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139138..23139395 | 15..272 | 98 | <- | Plus |
2R | 23139458..23139765 | 273..580 | 99 | <- | Plus |
2R | 23139820..23140074 | 581..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:19 Download gff for
BO14528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026661..19026918 | 15..272 | 98 | <- | Plus |
arm_2R | 19026981..19027288 | 273..580 | 99 | <- | Plus |
arm_2R | 19027343..19027597 | 581..835 | 99 | | Plus |
BO14528.5prime Sequence
905 bp (735 high quality bases) assembled on 2006-05-29
> BO14528.5prime
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCG
AGATTTACGATGCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAG
ATAAGGGCGTACAGAAAGCACAAGGGGCTTATGCAAAACATCAAGAAATC
GGCGG
BO14528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 1104 | CG13544-RA | 1..889 | 17..905 | 4270 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 100..988 | 17..905 | 4340 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139820..23140219 | 555..156 | 1970 | 99.5 | Minus |
2R | 25286936 | 2R | 23139452..23139765 | 869..556 | 1495 | 98.4 | Minus |
2R | 25286936 | 2R | 23140408..23140478 | 87..17 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23140284..23140353 | 156..87 | 350 | 100 | Minus |
2R | 25286936 | 2R | 23139354..23139395 | 905..864 | 195 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-13 07:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NOF | 4347 | NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). | 2537..2610 | 207..276 | 108 | 64.9 | Plus |
BO14528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:42 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:36 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:31:02 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 95..988 | 8..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:10 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 95..988 | 8..905 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:10 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139354..23139395 | 864..905 | 97 | <- | Minus |
2R | 23139458..23139765 | 556..863 | 98 | <- | Minus |
2R | 23139820..23140218 | 157..555 | 99 | <- | Minus |
2R | 23140284..23140352 | 88..156 | 100 | <- | Minus |
2R | 23140408..23140483 | 8..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:31:02 Download gff for
BO14528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026877..19026918 | 864..905 | 97 | <- | Minus |
arm_2R | 19026981..19027288 | 556..863 | 98 | <- | Minus |
arm_2R | 19027343..19027741 | 157..555 | 99 | <- | Minus |
arm_2R | 19027807..19027875 | 88..156 | 100 | <- | Minus |
arm_2R | 19027931..19028006 | 8..87 | 95 | | Minus |
BO14528.complete Sequence
1135 bp assembled on 2006-10-11
GenBank Submission: FJ633169
> BO14528.complete
GAAGTTATCAGTCGACATGTTCTCAGGACTTATACCCATGATGCAGCAGA
CTCGGAGGGCCACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACC
GAGTCCCAAATTGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAAT
TTCGCGAACCGGAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCC
GAACTATCCAAAACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAG
GATCTAAGAAAGGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTC
GGTCCGAAAAAACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGG
TTCAGGATCACCACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGA
GGATGGAAGAGCCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAA
GCAGGTGTGCGCCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGC
ACCACCTGCTCCGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAAC
TCAAACTGCATGTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCG
CTTCCACAATGGAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATC
GAGGAAAGGATACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTC
CCATTCGAAGGAGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGC
CGCCCTGAAAATGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCG
AGATTTACGATGCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAG
AATAGGGCGTACAGAAAGCACAAGGGGCTTATGCAGAACATCAAGAAATC
GGCGGAGAAGAGTAAACGCGACTTCTGCGGCGATGTCATCGCCAGTATGA
GACGCTGGAAAATCCTGGTGGACAACGATTTGACTGTGGACAAGAACATA
TTCAAAAACCCGCAAAATTTGGAGAGGTTCGTTGCTGAAATATCGCAATA
TGCAAATGAGTTCGAGAACTGCACCTGCTATTGCCGCATTCCCGTATTCA
CCGAAATCTATTGCGGCGCAAGCTTTCTAGACCAT
BO14528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1104 | CG13544-PA | 1..1101 | 17..1117 | 5415 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-RA | 1262 | CG13544-RA | 100..1200 | 17..1117 | 5415 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23139820..23140219 | 555..156 | 1970 | 99.5 | Minus |
2R | 25286936 | 2R | 23139452..23139765 | 869..556 | 1525 | 99 | Minus |
2R | 25286936 | 2R | 23139142..23139395 | 1117..864 | 1240 | 99.2 | Minus |
2R | 25286936 | 2R | 23140408..23140478 | 87..17 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23140284..23140353 | 156..87 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:23 has no hits.
BO14528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:28 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 1..1104 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:13 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 102..1210 | 8..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:55 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 105..1200 | 22..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:28 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 102..1210 | 8..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:56 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13544-RA | 105..1200 | 22..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:56 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23139140..23139395 | 864..1119 | 98 | <- | Minus |
2R | 23139458..23139765 | 556..863 | 99 | <- | Minus |
2R | 23139820..23140218 | 157..555 | 99 | <- | Minus |
2R | 23140284..23140352 | 88..156 | 100 | <- | Minus |
2R | 23140408..23140473 | 22..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:55 Download gff for
BO14528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19026663..19026918 | 864..1119 | 98 | <- | Minus |
arm_2R | 19026981..19027288 | 556..863 | 99 | <- | Minus |
arm_2R | 19027343..19027741 | 157..555 | 99 | <- | Minus |
arm_2R | 19027807..19027875 | 88..156 | 100 | <- | Minus |
arm_2R | 19027931..19027996 | 22..87 | 100 | | Minus |
BO14528.pep Sequence
Translation from 16 to 1135
> BO14528.pep
MFSGLIPMMQQTRRATVPLGGDSRSGNTESQIGSSKSSNCRLHLISRTGK
LLLDYKQYKAARTIQNNWRKFYFRKYFKDLRKAVITIQRWWRGFSVRKNH
FRYVENLLQKRVQDHHHRAATKIQALFRGWKSRRTIHDHSKLLRKQVCAA
EDLLNCVAFKLHHLLRTFAIPGVYSLKNSNCMSRVEKLLASLHFRFHNGR
VKTQLAKELADRGKDTETFKRSNKFSKVPFEGARYWSQCKPKCEAALKMS
KNIERRMYRIIEIYDASQREAHAALVEKNRAYRKHKGLMQNIKKSAEKSK
RDFCGDVIASMRRWKILVDNDLTVDKNIFKNPQNLERFVAEISQYANEFE
NCTCYCRIPVFTEIYCGASFLDH
BO14528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13544-PA | 367 | CG13544-PA | 1..367 | 1..367 | 1944 | 100 | Plus |
CG31735-PC | 312 | CG31735-PC | 4..294 | 60..349 | 486 | 36.4 | Plus |
CG31735-PA | 312 | CG31735-PA | 4..294 | 60..349 | 486 | 36.4 | Plus |
CG12448-PC | 352 | CG12448-PC | 40..351 | 34..366 | 428 | 30.4 | Plus |
CG18063-PD | 371 | CG18063-PD | 43..355 | 45..354 | 398 | 30.6 | Plus |