Clone Sequence Records
BO14532.3prime Sequence
841 bp (745 high quality bases) assembled on 2006-05-29
> BO14532.3prime
ATGGTCTAGAAAGCTTGCGTCATAGCGCTTCGACGGCGGTACTAAGTGCT
CCGGCAGCACGGTGGGCAGCTCGCAGCCTTCCAGCTTGACGTTGATTAAG
TGCAAGGCCAGCGCGAACTCGTCAGAGTCCAGGAACCCATCGCCGTCGAC
GTCCGACAGTTTCCAGATCTTGCTGAGCACCGAGTTGGGCAGTTTCGATT
TGATGAGTTCCTGCTTGGCAGTTGCACCGGATATCTTGCCATCGACTGGT
CCCAGCCCATTGAAGATGCCATCTGTGCGCGGCTTGTCCTTGTTGCAGAT
CCACTCGTGCTCTCCGTAGCCGGCATCGATGCCCTCGCCCTTCATGTAGC
CGAATGGTGAGACATGGTCGTCGATGACTCCCTCGAAGGCACCACCCTTG
ACGATTGGGTCCGCGACCATGGTCATCTCCTCCTGGGGAATCATCTCCAT
CAGGCGGGCAATGTCCTTGGCCAGCATGTTGTCCACGATGTCCAGCAGAT
GGGGCTTGAGGGAGTGGAACTTGGTGAAGTCCTGGTGCTGCAGGACCTCC
TGCATCTTCTTGATGTCGGGGAAGTCGCCGGGAGAAATGGAGTGCTCGCG
CTGGATGCGATCGTATACCTGGCCGAGGTTCTTAATCAAGTCCTTCTTCT
TGCTGTCCTTGCCGAACACAGAGGGCATGTCCTTGCGCAGCTCGGCAATG
ATGAAGGCATGCACCTTGGCCAGGCGCGCCCGCTTGATCAGATCGTTCAG
CTTGCGCAGGGCGGCGTTACGCGGCAGGGACTGCAGATCCCTGAACAGAT
CCTGTTCCTCGTCCTCGAACAGTCGGCGGGTGGCGTCCAAA
BO14532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6148-PA | 1623 | Past1-RA | 802..1620 | 837..19 | 4070 | 99.8 | Minus |
CG6148-PB | 1605 | Past1-RB | 784..1602 | 837..19 | 4070 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Past1-RB | 2679 | CG6148-RB | 1064..1882 | 837..19 | 4080 | 99.9 | Minus |
Past1-RA | 1866 | CG6148-RA | 993..1811 | 837..19 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12698894..12699337 | 837..394 | 2205 | 99.8 | Minus |
3R | 32079331 | 3R | 12703871..12704078 | 226..19 | 1025 | 99.5 | Minus |
3R | 32079331 | 3R | 12703638..12703812 | 396..222 | 875 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3046..3134 | 618..531 | 109 | 59.6 | Minus |
BO14532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:49 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-PB | 783..1605 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:45 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6148-PB | 783..1605 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:47 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 992..1811 | 19..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:58 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 992..1811 | 19..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:58 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12698893..12699335 | 396..838 | 99 | -> | Minus |
3R | 12703639..12703812 | 222..395 | 100 | -> | Minus |
3R | 12703876..12704078 | 19..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:47 Download gff for
BO14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8524615..8525057 | 396..838 | 99 | -> | Minus |
arm_3R | 8529361..8529534 | 222..395 | 100 | -> | Minus |
arm_3R | 8529598..8529800 | 19..221 | 100 | | Minus |
BO14532.5prime Sequence
858 bp (788 high quality bases) assembled on 2006-05-29
> BO14532.5prime
GAAGTTATCAGTCGACATGCCACGCCCAGAAGCAGGCGACAGCTTTCTGA
AGCGCGAGAAGAACACCCAGGAGGTAGTGGAGAATGTGATCGGCGAGCTG
AAGAAGATCTATCGGAGCAAGTTGCTGCCGCTGGAGGAGCACTACCAGTT
CCACGACTTTCACTCGCCAAAGCTCGAGGATCCAGACTTCGATGCGAAGC
CCATGATCCTGCTGGTGGGCCAGTACTCCACGGGCAAGACGACCTTCATC
CGCTATCTGCTGGAACGCGACTTTCCGGGCATTAGAATTGGTCCGGAGCC
AACGACGGACCGCTTCATCGCCGTGATGTACGACGACAAGGAGGGTGTGA
TACCGGGCAACGCCCTGGTTGTGGACCCCAAGAAGCAGTTCCGGCCGCTG
TCCAAGTACGGCAACGCCTTCCTGAATCGCTTCCAATGCAGCAGTGTGGC
CTCGCCTGTGCTGAACGCCATCTCCATCGTAGACACGCCCGGAATTCTCT
CCGGCGAAAAGCAGCGCATCGACAGGGGCTACGACTTCACCGGCGTGCTG
GAGTGGTTCGCGGAGCGCGTGGACCGCATCATCCTGCTGTTCGACGCCCA
CAAACTGGACATCTCCGACGAGTTCCGGCGCTCGATCGAGGCGCTCAAGG
GACACGACGACAAGATCCGTATTATCCTGAACAAGGCCGACATGATTGAT
CACCAGCAGTTAATGCGGGTGTACGGAGCACTGATGTGGTCGCTGGGCAA
GGTGCTGCAGACGCCGGAGGTGGCTCGTGTCTACATCGGCTCCTTCTGGG
ACCAGCCGCTGCGCTTCGACGCCAACCGCCGACTGTTCGAGGACGAGGAA
CAGGATCT
BO14532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6148-PA | 1623 | Past1-RA | 1..842 | 17..858 | 4085 | 99.4 | Plus |
CG6148-PB | 1605 | Past1-RB | 7..824 | 41..858 | 3965 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Past1-RA | 1866 | CG6148-RA | 192..1033 | 17..858 | 4135 | 99.4 | Plus |
Past1-RB | 2679 | CG6148-RB | 287..1104 | 41..858 | 4015 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12698117..12698934 | 41..858 | 4015 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:38:26 has no hits.
BO14532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:30:51 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:47 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6148-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:08 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 182..1033 | 7..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:48 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 182..1033 | 7..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:48 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12698119..12698934 | 43..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:08 Download gff for
BO14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8523841..8524656 | 43..858 | 99 | | Plus |
BO14532.complete Sequence
1654 bp assembled on 2007-06-22
GenBank Submission: FJ633171
> BO14532.complete
GAAGTTATCAGTCGACATGCCACGCCCAGAAGCAGGCGACAGCTTTCTGA
AGCGCGAGAAGAACACCCAGGAGGTAGTGGAGAATGTGATCGGCGAGCTG
AAGAAGATCTATCGGAGCAAGTTGCTGCCGCTGGAGGAGCACTACCAGTT
CCACGACTTTCACTCGCCAAAGCTCGAGGATCCAGACTTCGATGCGAAGC
CCATGATCCTGCTGGTGGGCCAGTACTCCACGGGCAAGACGACCTTCATC
CGCTATCTGCTGGAACGCGACTTTCCGGGCATTAGAATTGGTCCGGAGCC
AACGACGGACCGCTTCATCGCCGTGATGTACGACGACAAGGAGGGTGTGA
TACCGGGCAACGCCCTGGTTGTGGACCCCAAGAAGCAGTTCCGGCCGCTG
TCCAAGTACGGCAACGCCTTCCTGAATCGCTTCCAATGCAGCAGTGTGGC
CTCGCCTGTGCTGAACGCCATCTCCATCGTAGACACGCCCGGAATTCTCT
CCGGCGAAAAGCAGCGCATCGACAGGGGCTACGACTTCACCGGCGTGCTG
GAGTGGTTCGCGGAGCGCGTGGACCGCATCATCCTGCTGTTCGACGCCCA
CAAACTGGACATCTCCGACGAGTTCCGGCGCTCGATCGAGGCGCTCAAGG
GACACGACGACAAGATCCGTATTATCCTGAACAAGGCCGACATGATTGAT
CACCAGCAGTTAATGCGGGTGTACGGAGCACTGATGTGGTCGCTGGGCAA
GGTGCTGCAGACGCCGGAGGTGGCTCGTGTCTACATCGGCTCCTTCTGGG
ACCAGCCGCTGCGCTTCGACGCCAACCGCCGACTGTTCGAGGACGAGGAA
CAGGATCTGTTCAGGGATCTGCAGTCCCTGCCGCGTAACGCCGCCCTGCG
CAAGCTGAACGATCTGATCAAGCGGGCGCGCCTGGCCAAGGTGCATGCCT
TCATCATTGCCGAGCTGCGCAAGGACATGCCCTCTGTGTTCGGCAAGGAC
AGCAAGAAGAAGGACTTGATTAAGAACCTCGGCCAGGTATACGATCGCAT
CCAGCGCGAGCACTCCATTTCTCCCGGCGACTTCCCCGACATCAAGAAGA
TGCAGGAGGTCCTGCAGCACCAGGACTTCACCAAGTTCCACTCCCTCAAG
CCCCATCTGCTGGACATCGTGGACAACATGCTGGCCAAGGACATTGCCCG
CCTGATGGAGATGATTCCCCAGGAGGAGATGACCATGGTCGCGGACCCAA
TCGTCAAGGGTGGTGCCTTCGAGGGAGTCATCGACGACCATGTCTCACCA
TTCGGCTACATGAAGGGCGAGGGCATCGATGCCGGCTACGGAGAGCACGA
GTGGATCTGCAACAAGGACAAGCCGCGCACAGATGGCATCTTCAATGGGC
TGGGACCAGTCGATGGCAAGATATCCGGTGCAACTGCCAAGCAGGAACTC
ATCAAATCGAAACTGCCCAACTCGGTGCTCAGCAAGATCTGGAAACTGTC
GGACGTCGACGGCGATGGGTTCCTGGACTCTGACGAGTTCGCGCTGGCCT
TGCACTTAATCAACGTCAAGCTGGAAGGCTGCGAGCTGCCCACCGTGCTG
CCGGAGCACTTAGTACCGCCGTCGAAGCGCTATGACGCAAGCTTTCTAGA
CCAT
BO14532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Past1-RA | 1623 | CG6148-PA | 1..1620 | 17..1636 | 8025 | 99.7 | Plus |
Past1-RB | 1605 | CG6148-PB | 7..1602 | 41..1636 | 7905 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Past1-RA | 1866 | CG6148-RA | 192..1811 | 17..1636 | 8025 | 99.7 | Plus |
Past1-RB | 2679 | CG6148-RB | 287..1882 | 41..1636 | 7905 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12698117..12699337 | 41..1261 | 6030 | 99.6 | Plus |
3R | 32079331 | 3R | 12703871..12704078 | 1429..1636 | 1025 | 99.5 | Plus |
3R | 32079331 | 3R | 12703638..12703812 | 1259..1433 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:08:31 has no hits.
BO14532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:53 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 1..1623 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:16 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 182..1811 | 7..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:17 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 192..1811 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:54 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 182..1811 | 7..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:07 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Past1-RA | 192..1811 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:07 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12697513..12697538 | 17..42 | 100 | -> | Plus |
3R | 12698119..12699335 | 43..1259 | 99 | -> | Plus |
3R | 12703639..12703812 | 1260..1433 | 100 | -> | Plus |
3R | 12703876..12704078 | 1434..1638 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:17 Download gff for
BO14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8523235..8523260 | 17..42 | 100 | -> | Plus |
arm_3R | 8523841..8525057 | 43..1259 | 99 | -> | Plus |
arm_3R | 8529361..8529534 | 1260..1433 | 100 | -> | Plus |
arm_3R | 8529598..8529800 | 1434..1638 | 99 | | Plus |
BO14532.pep Sequence
Translation from 16 to 1654
> BO14532.pep
MPRPEAGDSFLKREKNTQEVVENVIGELKKIYRSKLLPLEEHYQFHDFHS
PKLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRF
IAVMYDDKEGVIPGNALVVDPKKQFRPLSKYGNAFLNRFQCSSVASPVLN
AISIVDTPGILSGEKQRIDRGYDFTGVLEWFAERVDRIILLFDAHKLDIS
DEFRRSIEALKGHDDKIRIILNKADMIDHQQLMRVYGALMWSLGKVLQTP
EVARVYIGSFWDQPLRFDANRRLFEDEEQDLFRDLQSLPRNAALRKLNDL
IKRARLAKVHAFIIAELRKDMPSVFGKDSKKKDLIKNLGQVYDRIQREHS
ISPGDFPDIKKMQEVLQHQDFTKFHSLKPHLLDIVDNMLAKDIARLMEMI
PQEEMTMVADPIVKGGAFEGVIDDHVSPFGYMKGEGIDAGYGEHEWICNK
DKPRTDGIFNGLGPVDGKISGATAKQELIKSKLPNSVLSKIWKLSDVDGD
GFLDSDEFALALHLINVKLEGCELPTVLPEHLVPPSKRYDASFLDH
BO14532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Past1-PA | 540 | CG6148-PA | 1..540 | 1..540 | 2820 | 100 | Plus |
Past1-PB | 534 | CG6148-PB | 3..534 | 9..540 | 2775 | 100 | Plus |
CG9297-PA | 930 | CG9297-PA | 497..872 | 8..378 | 463 | 29.3 | Plus |
CG9297-PE | 952 | CG9297-PE | 519..894 | 8..378 | 463 | 29.3 | Plus |
CG9297-PD | 952 | CG9297-PD | 519..894 | 8..378 | 463 | 29.3 | Plus |