Clone Sequence Records
BO14538.3prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-29
> BO14538.3prime
ATGGTCTAGAAAGCTTGCGCGCCCGTACTTCTGGTAGACCCACTCCTTGT
TGTCCAGCGGACAGACCAGGCGCGTTTTCAACCAGCGCGCGATGCACTGG
TAATGGAATGCGTGGTTGCACTCGCCCCAAGCCACAGTGCACTCGTCTTG
GTTTGCATTCGGGTCCGCCTGGCACTCGATGCACAGGTTCATGATGTGGT
TACGGCAGATGGCACAGTTGTCCACTGCTACGTCCCATCCCCACATGGCG
TGCGCAACCCATTTCTTCACCACAAAGCGCTCCGTCCTGGCCTGGACAGC
TCCTCCACTACAGGATGGCTCTTCGTCATTGAAGTCCATGTCGTGGAAGT
CCTCCGTCTCCTCAACCTCTATCTCCTCGGCCATGTCGACTGATAACT
BO14538.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16988-PA | 369 | Roc1b-RA | 1..362 | 384..23 | 1785 | 99.7 | Minus |
CG16982-PA | 327 | Roc1a-RA | 115..174 | 225..166 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc5-RB | 3219 | CG6905-RB | 2674..3040 | 19..385 | 1805 | 99.5 | Plus |
Cdc5-RA | 3346 | CG6905-RA | 2801..3167 | 19..385 | 1805 | 99.5 | Plus |
Roc1b-RA | 506 | CG16988-RA | 50..416 | 385..19 | 1805 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 358030..358396 | 385..19 | 1805 | 99.5 | Minus |
X | 23542271 | X | 647711..647916 | 225..23 | 380 | 80.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:49:45 has no hits.
BO14538.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:00 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-PA | 1..369 | 14..384 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:01 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16988-PA | 1..369 | 14..384 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:07:39 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 44..420 | 13..393 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:26 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 44..420 | 13..393 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:26 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 358024..358400 | 13..393 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:07:39 Download gff for
BO14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 358024..358400 | 13..393 | 97 | | Minus |
BO14538.5prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-29
> BO14538.5prime
GAAGTTATCACTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCGCAAGCTTTCTAGACC
BO14538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16988-PA | 369 | Roc1b-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
CG16982-PA | 327 | Roc1a-RA | 115..174 | 176..235 | 175 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc5-RB | 3219 | CG6905-RB | 2674..3040 | 382..16 | 1835 | 100 | Minus |
Cdc5-RA | 3346 | CG6905-RA | 2801..3167 | 382..16 | 1835 | 100 | Minus |
Roc1b-RA | 506 | CG16988-RA | 50..416 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 358030..358396 | 16..382 | 1835 | 100 | Plus |
X | 23542271 | X | 647711..647918 | 176..380 | 405 | 80.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:52:04 has no hits.
BO14538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:01 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-PA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:03 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16988-PA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:23 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 40..420 | 2..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:16:45 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 40..420 | 2..388 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:16:45 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 358020..358400 | 2..388 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:23 Download gff for
BO14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 358020..358400 | 2..388 | 97 | | Plus |
BO14538.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ633172
> BO14538.complete
GAAGTTATCAGTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCGCAAGCTTTCTAGACCAT
BO14538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1b-RA | 369 | CG16988-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Roc1a-RD | 327 | CG16982-PD | 59..322 | 120..380 | 430 | 78.4 | Plus |
Roc1a-RA | 327 | CG16982-PA | 59..322 | 120..380 | 430 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc5-RB | 3219 | CG6905-RB | 2674..3040 | 382..16 | 1835 | 100 | Minus |
Cdc5-RA | 3346 | CG6905-RA | 2801..3167 | 382..16 | 1835 | 100 | Minus |
Roc1b-RA | 506 | CG16988-RA | 50..416 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 358030..358396 | 16..382 | 1835 | 100 | Plus |
X | 23542271 | X | 647711..647918 | 176..380 | 405 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:25:30 has no hits.
BO14538.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:46 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:50 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6905-RA | 2797..3173 | 8..388 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:12 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 51..416 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:46 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6905-RA | 2797..3173 | 8..388 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:22 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1b-RA | 51..416 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:22 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 358031..358396 | 17..384 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:12 Download gff for
BO14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 358031..358396 | 17..384 | 99 | | Plus |
BO14538.pep Sequence
Translation from 16 to 400
> BO14538.pep
MAEEIEVEETEDFHDMDFNDEEPSCSGGAVQARTERFVVKKWVAHAMWGW
DVAVDNCAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIAR
WLKTRLVCPLDNKEWVYQKYGRASFLDH
BO14538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1b-PA | 122 | CG16988-PA | 1..122 | 1..122 | 705 | 100 | Plus |
Roc1a-PD | 108 | CG16982-PD | 9..107 | 21..121 | 395 | 67.6 | Plus |
Roc1a-PA | 108 | CG16982-PA | 9..107 | 21..121 | 395 | 67.6 | Plus |
Roc1a-PC | 136 | CG16982-PC | 53..135 | 40..121 | 376 | 73.5 | Plus |
Roc2-PB | 113 | CG8998-PB | 4..113 | 15..122 | 263 | 42.3 | Plus |