Clone BO14538 Report

Search the DGRC for BO14538

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptRoc1b-RA
Protein status:BO14538.pep: validated full length
Sequenced Size:400

Clone Sequence Records

BO14538.3prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-29

> BO14538.3prime
ATGGTCTAGAAAGCTTGCGCGCCCGTACTTCTGGTAGACCCACTCCTTGT
TGTCCAGCGGACAGACCAGGCGCGTTTTCAACCAGCGCGCGATGCACTGG
TAATGGAATGCGTGGTTGCACTCGCCCCAAGCCACAGTGCACTCGTCTTG
GTTTGCATTCGGGTCCGCCTGGCACTCGATGCACAGGTTCATGATGTGGT
TACGGCAGATGGCACAGTTGTCCACTGCTACGTCCCATCCCCACATGGCG
TGCGCAACCCATTTCTTCACCACAAAGCGCTCCGTCCTGGCCTGGACAGC
TCCTCCACTACAGGATGGCTCTTCGTCATTGAAGTCCATGTCGTGGAAGT
CCTCCGTCTCCTCAACCTCTATCTCCTCGGCCATGTCGACTGATAACT

BO14538.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG16988-PA 369 Roc1b-RA 1..362 384..23 1785 99.7 Minus
CG16982-PA 327 Roc1a-RA 115..174 225..166 175 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc5-RB 3219 CG6905-RB 2674..3040 19..385 1805 99.5 Plus
Cdc5-RA 3346 CG6905-RA 2801..3167 19..385 1805 99.5 Plus
Roc1b-RA 506 CG16988-RA 50..416 385..19 1805 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 358030..358396 385..19 1805 99.5 Minus
X 23542271 X 647711..647916 225..23 380 80.1 Minus
Blast to na_te.dros performed on 2015-02-12 11:49:45 has no hits.

BO14538.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:00 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-PA 1..369 14..384 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:01 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16988-PA 1..369 14..384 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:07:39 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 44..420 13..393 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:26 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 44..420 13..393 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:26 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 358024..358400 13..393 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:07:39 Download gff for BO14538.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 358024..358400 13..393 97   Minus

BO14538.5prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-29

> BO14538.5prime
GAAGTTATCACTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCGCAAGCTTTCTAGACC

BO14538.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16988-PA 369 Roc1b-RA 1..366 17..382 1830 100 Plus
CG16982-PA 327 Roc1a-RA 115..174 176..235 175 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc5-RB 3219 CG6905-RB 2674..3040 382..16 1835 100 Minus
Cdc5-RA 3346 CG6905-RA 2801..3167 382..16 1835 100 Minus
Roc1b-RA 506 CG16988-RA 50..416 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 358030..358396 16..382 1835 100 Plus
X 23542271 X 647711..647918 176..380 405 80.8 Plus
Blast to na_te.dros performed on 2015-02-12 00:52:04 has no hits.

BO14538.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:01 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:03 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16988-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:23 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 40..420 2..388 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:16:45 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 40..420 2..388 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:16:45 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 358020..358400 2..388 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:23 Download gff for BO14538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 358020..358400 2..388 97   Plus

BO14538.complete Sequence

400 bp assembled on 2006-10-11

GenBank Submission: FJ633172

> BO14538.complete
GAAGTTATCAGTCGACATGGCCGAGGAGATAGAGGTTGAGGAGACGGAGG
ACTTCCACGACATGGACTTCAATGACGAAGAGCCATCCTGTAGTGGAGGA
GCTGTCCAGGCCAGGACGGAGCGCTTTGTGGTGAAGAAATGGGTTGCGCA
CGCCATGTGGGGATGGGACGTAGCAGTGGACAACTGTGCCATCTGCCGTA
ACCACATCATGAACCTGTGCATCGAGTGCCAGGCGGACCCGAATGCAAAC
CAAGACGAGTGCACTGTGGCTTGGGGCGAGTGCAACCACGCATTCCATTA
CCACTGCATCGCGCGCTGGTTGAAAACGCGCCTGGTCTGTCCGCTGGACA
ACAAGGAGTGGGTCTACCAGAAGTACGGCCGCGCAAGCTTTCTAGACCAT

BO14538.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Roc1b-RA 369 CG16988-PA 1..366 17..382 1830 100 Plus
Roc1a-RD 327 CG16982-PD 59..322 120..380 430 78.4 Plus
Roc1a-RA 327 CG16982-PA 59..322 120..380 430 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc5-RB 3219 CG6905-RB 2674..3040 382..16 1835 100 Minus
Cdc5-RA 3346 CG6905-RA 2801..3167 382..16 1835 100 Minus
Roc1b-RA 506 CG16988-RA 50..416 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 358030..358396 16..382 1835 100 Plus
X 23542271 X 647711..647918 176..380 405 80.8 Plus
Blast to na_te.dros performed on 2014-11-27 08:25:30 has no hits.

BO14538.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:46 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:50 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
CG6905-RA 2797..3173 8..388 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:12 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 51..416 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:46 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
CG6905-RA 2797..3173 8..388 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:22 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
Roc1b-RA 51..416 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:22 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
3L 358031..358396 17..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:12 Download gff for BO14538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 358031..358396 17..384 99   Plus

BO14538.pep Sequence

Translation from 16 to 400

> BO14538.pep
MAEEIEVEETEDFHDMDFNDEEPSCSGGAVQARTERFVVKKWVAHAMWGW
DVAVDNCAICRNHIMNLCIECQADPNANQDECTVAWGECNHAFHYHCIAR
WLKTRLVCPLDNKEWVYQKYGRASFLDH

BO14538.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Roc1b-PA 122 CG16988-PA 1..122 1..122 705 100 Plus
Roc1a-PD 108 CG16982-PD 9..107 21..121 395 67.6 Plus
Roc1a-PA 108 CG16982-PA 9..107 21..121 395 67.6 Plus
Roc1a-PC 136 CG16982-PC 53..135 40..121 376 73.5 Plus
Roc2-PB 113 CG8998-PB 4..113 15..122 263 42.3 Plus