Clone Sequence Records
BO14542.3prime Sequence
861 bp (756 high quality bases) assembled on 2006-05-29
> BO14542.3prime
ATGGTCTAGAAAGCTTGCGTTCATCTGCGTCGATATACGGGCCATATTTC
TGGTCATGGTAACCTGATCGTTAGATATTTTGACCAGGCCCTGCGATCGC
ATATACCTCTCCATTTCTAAACTAGCTTTTTTTGCGTAACGCACACTTTT
GTCGTCAACCTCCTGGTTTGCATTTGGGGCCGCCATCATCACATCGCTCA
TTTTGCGGCCGTATTTCGCAATGGTGTACTCCCCCTCCTGGGAAATCTTG
CGTCGCTCTGCGAAACTCAGCTGCGGCTCCTGGAATTCCTCGCTAATCGA
GCACAACGTGCTGTCGATCTGGGTTAACCGCGGGCTCACACCATCACCGA
CCAGGTCTCCATCTGGCGGTGCTCCGGGGCGGTGTAAAAACTCCGATTCT
CGACTTTCCGCGGGCGTTGCCAGTAGGACCTTCCTTTTCCCCTTTAACCT
CTTCGGCTTCACCAGGTTTGGCATTGAATGTTCGCTCATATCGGTTGTTT
TCCATAACATTTCGTTTATGTCGGTCAGCCGCCGGCCCAGTACCCTGGGA
TTCAAGGCCACGCCTTTTTTTGGATGCGGAGTGCCAACGGCAACTATATC
CTTGATACTCCTAGTCAGCGACTGGCGACGAAATACGGATACAGAAGGCT
TAGATTTTGGCAGGGTTTTCGACCTATGAGAGCTCCCATCGCTGATACTT
GGACTTCCGTCGTCCGGCCTTTCCGGTCTTTCTGGCCTTTCCGAGCGTGA
ATTGTTTCGATTATCAAAACCAGTACGCATTATGAGGCGGGCCTTTAGTA
AACTGGCATCAACTCCTTGCTGCGCGCGAGGATATGGAGTCGACAACTTA
TTAAAGGACTT
BO14542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 1032 | CG15025-RA | 187..1029 | 861..19 | 4090 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 330..1172 | 861..19 | 4140 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489811..19490442 | 19..650 | 3145 | 99.8 | Plus |
| 3R | 32079331 | 3R | 19490574..19490786 | 649..861 | 1005 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:22:43 has no hits.
BO14542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:08 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 187..1032 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:15 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 187..1032 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:50 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 330..1172 | 19..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:00 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 330..1172 | 19..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:00 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19490574..19490786 | 649..861 | 98 | | Plus |
| 3R | 19489811..19490440 | 19..648 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:50 Download gff for
BO14542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315533..15316162 | 19..648 | 99 | <- | Plus |
| arm_3R | 15316296..15316508 | 649..861 | 98 | | Plus |
BO14542.5prime Sequence
856 bp (779 high quality bases) assembled on 2006-05-29
> BO14542.5prime
GAAGTTATCAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAG
AAATTGGGAGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTG
AATCTGGTTGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAA
ATTCAAATCCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAA
TGAAGTCCTCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGA
GTTGATGCCAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGA
TAATCGAAACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGG
ACGACGGAAGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACC
CTGCCAAAATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGAC
TAGGAGTATCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAG
GCGTGGCCTTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAAC
GAAATGTTATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCT
GGTGAAGCCGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGC
CCGCGGAAAGTCGAGAATCGGAGTTTTTACACCGCCCCGGAGCACCGCCA
GATGGAGACCTGGTCGGTGATGGTGTGAGCCCGCGGTTAACCCAGATCGA
CAGCACGTTGTGCTCGATTAGCGAGGAATTCCAGGAGCCGCAGCTGAGTT
TCGCAGAGCGACGCAAGATTTCCCAGGAGGGGGAGTACACCATTGCGAAA
TACGGC
BO14542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 1032 | CG15025-RA | 1..840 | 17..856 | 4150 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..983 | 17..856 | 4170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19490000..19490442 | 856..414 | 2200 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19490574..19490972 | 415..17 | 1980 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:06:51 has no hits.
BO14542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:09 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:16 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:24 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..983 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:25 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..983 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:25 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19490000..19490440 | 416..856 | 99 | <- | Minus |
| 3R | 19490574..19490976 | 10..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:24 Download gff for
BO14542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315722..15316162 | 416..856 | 99 | <- | Minus |
| arm_3R | 15316296..15316698 | 10..415 | 99 | | Minus |
BO14542.complete Sequence
1063 bp assembled on 2006-10-11
GenBank Submission: FJ633173
> BO14542.complete
GAAGTTATCAGTCGACATGCGAAATTCAAAGAAAGATTCGTTCAGGGAAG
AAATTGGGAGTGGGACTAGGAGGCCGCACAACTCGCTAAATGACCCCTTG
AATCTGGTTGACCGGGAACTATCTGTTCTCTTGAGGATACCGAAGCTTAA
ATTCAAATCCGTGGAGCCCCTACCCATCGCTTCCAGGGACTATGGGCTAA
TGAAGTCCTCTAATAAGTCGTCGACTCCATATCCTCGCGCGCAGCAAGGA
GTTGATGCCAGTTTACTAAAGGCCCGCCTCATAATGCGTACTGGTTCTGA
TAATCGAAACAATTCACGCTCGGAAAGGCCAGAAAGACCGGAAAGGCCGG
ACGACGGAAGTCCAAGTATCAGCGATGGGAGCTCTCATAGGTCGAAAACC
CTGCCAAAATCTAAGCCTTCTGTATCCGTATTTCGTCGCCAGTCGCTGAC
TAGGAGTATCAAGGATATAGTTGCCGTTGGCACTCCGCATCCAAAAAAAG
GCGTGGCCTTGAATCCCAGGGTACTGGGCCGGCGGCTGACCGACATAAAC
GAAATGTTATGGAAAACAACCGATATGAGCGAACATTCAATGCCAAACCT
GGTGAAGCCGAAGAGGTTAAAGGGGAAAAGGAAGGTCCTACTGGCAACGC
CCGCGGAAAGTCGAGAATCGGAGTTTTTACACCGCCCCGGAGCACCGCCA
GATGGAGACCTGGTCGGTGATGGTGTGAGCCCGCGGTTAACCCAGATCGA
CAGCACGTTGTGCTCGATTAGCGAGGAATTCCAGGAGCCGCAGCTGAGTT
TCGCAGAGCGACGCAAGATTTCCCAGGAGGGGGAGTACACCATTGCGAAA
TACGGCCGCAAAATGAGCGATGTGATGATGGCGGCCCCAAATGCAAACCA
GGAGGTTGACGACAAAAGTGTGCGTTACGCAAAAAAAGCTAGTTTAGAAA
TGGAGAGGTATATGCGATCGCAGGGCCTGGTCAAAATATCTAACGATCAG
GTTACCATGACCAGAAATATGGCCCGTATATCGACGCAGATGAACGCAAG
CTTTCTAGACCAT
BO14542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1032 | CG15025-PA | 1..1029 | 17..1045 | 5115 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-RA | 1413 | CG15025-RA | 144..1172 | 17..1045 | 5115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19489811..19490442 | 1045..414 | 3145 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19490574..19490972 | 415..17 | 1980 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:13 has no hits.
BO14542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:48 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 1..1032 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:51 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..1172 | 10..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:12 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 144..1172 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:49 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 140..1172 | 10..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:04 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15025-RA | 144..1172 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:04 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19489808..19490440 | 416..1047 | 99 | <- | Minus |
| 3R | 19490574..19490972 | 17..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:12 Download gff for
BO14542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15315530..15316162 | 416..1047 | 99 | <- | Minus |
| arm_3R | 15316296..15316694 | 17..415 | 99 | | Minus |
BO14542.pep Sequence
Translation from 16 to 1063
> BO14542.pep
MRNSKKDSFREEIGSGTRRPHNSLNDPLNLVDRELSVLLRIPKLKFKSVE
PLPIASRDYGLMKSSNKSSTPYPRAQQGVDASLLKARLIMRTGSDNRNNS
RSERPERPERPDDGSPSISDGSSHRSKTLPKSKPSVSVFRRQSLTRSIKD
IVAVGTPHPKKGVALNPRVLGRRLTDINEMLWKTTDMSEHSMPNLVKPKR
LKGKRKVLLATPAESRESEFLHRPGAPPDGDLVGDGVSPRLTQIDSTLCS
ISEEFQEPQLSFAERRKISQEGEYTIAKYGRKMSDVMMAAPNANQEVDDK
SVRYAKKASLEMERYMRSQGLVKISNDQVTMTRNMARISTQMNASFLDH
BO14542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15025-PA | 343 | CG15025-PA | 1..343 | 1..343 | 1741 | 100 | Plus |
