Clone BO14546 Report

Search the DGRC for BO14546

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG8517-RA
Protein status:BO14546.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO14546.3prime Sequence

487 bp (486 high quality bases) assembled on 2006-05-29

> BO14546.3prime
TTTAGGGGGGCGCNAAANGAATGGTATAGAAAGATTGTGTCCTCTGTAGG
GTGAGGTGGTGGGTGTGGTANAGNTTTATGGAGTAANTTGTGTAGGTATT
GGATGGTNTGNAGGACCCCCATTCGATTTACCACCTTGCCGTTGCTGATG
ACCACCAGTGAAGGAACGGACCCCACGTTGTAGTCAAGGGCCAGTTCCCC
ATGCTCATCAATATCGACCCGGGCCAATCTCACTCGACCTTCCTGCTCGG
ACACAACGTTCTCCAGTCGAGGGGCCAGAGCCTTGCATGGACAGCACCAG
CTGGCATGAAAGTCCACAACCACCGGCCGATCGCTATTGATCACACGTTG
CTCAAAGTCTTTTCTAGTCTCCACATCGAAAATCGGTTGCTTGCCAGTAC
TGGTCATTCCGCGATTAGCCTTCATCAAATTCATTAGGCGCTTTGCCCGG
AATAATCTTCTATAGCTGGACATGTCGACTGATAACT

BO14546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-PA 438 CG8517-RA 1..355 473..119 1775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 732 CG8517-RA 99..518 473..54 1880 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19714405..19714654 303..54 1030 93.6 Minus
2R 25286936 2R 19714174..19714346 473..301 865 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:33:01 has no hits.

BO14546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:16 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-PA 1..428 46..473 95   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:27 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-PA 1..428 46..473 95   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:47:22 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..526 46..473 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:37 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..526 46..473 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:37 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19714174..19714346 301..473 100 -> Minus
2R 19714408..19714662 46..300 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:47:22 Download gff for BO14546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15601679..15601851 301..473 100 -> Minus
arm_2R 15601913..15602167 46..300 92   Minus

BO14546.5prime Sequence

467 bp (466 high quality bases) assembled on 2006-05-29

> BO14546.5prime
GAAGTTATCCCTCTTAGGGGCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGCCCGGGAGGGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CGCAAGCTTTCTAGACC

BO14546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-PA 438 CG8517-RA 79..435 95..451 1785 100 Plus
CG8517-PA 438 CG8517-RA 5..69 21..85 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 732 CG8517-RA 103..533 21..451 2080 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19714405..19714669 187..451 1325 100 Plus
2R 25286936 2R 19714178..19714346 21..189 770 97 Plus
Blast to na_te.dros performed on 2015-02-04 02:08:56 has no hits.

BO14546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:17 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-PA 3..438 20..452 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:28 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-PA 3..438 20..452 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:02 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 97..533 14..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:18 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 97..533 14..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:18 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19714172..19714346 14..189 95 -> Plus
2R 19714408..19714669 190..451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:02 Download gff for BO14546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15601677..15601851 14..189 95 -> Plus
arm_2R 15601913..15602174 190..451 100   Plus

BO14546.complete Sequence

469 bp assembled on 2006-10-11

GenBank Submission: FJ633174

> BO14546.complete
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CGCAAGCTTTCTAGACCAT

BO14546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 438 CG8517-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-RA 732 CG8517-RA 99..533 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19714405..19714669 187..451 1325 100 Plus
2R 25286936 2R 19714174..19714346 17..189 865 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:11:02 has no hits.

BO14546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:51 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 1..438 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:53 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..533 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:53 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..533 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:51 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..533 17..451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:18 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
CG8517-RA 99..533 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:18 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19714174..19714346 17..189 100 -> Plus
2R 19714408..19714669 190..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:53 Download gff for BO14546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15601679..15601851 17..189 100 -> Plus
arm_2R 15601913..15602174 190..453 99   Plus

BO14546.pep Sequence

Translation from 16 to 469

> BO14546.pep
MSSYRRLFRAKRLMNLMKANRGMTSTGKQPIFDVETRKDFEQRVINSDRP
VVVDFHASWCCPCKALAPRLENVVSEQEGRVRLARVDIDEHGELALDYNV
GSVPSLVVISNGKVVNRMVGLQTSEYLRKWLHKAVPHPPPEDTENASFLD
H

BO14546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8517-PA 145 CG8517-PA 1..145 1..145 761 100 Plus
CG8993-PA 142 CG8993-PA 14..138 11..135 347 52 Plus
TrxT-PB 157 CG3315-PB 2..104 31..133 201 36.5 Plus
TrxT-PA 157 CG3315-PA 2..104 31..133 201 36.5 Plus
CG3719-PA 160 CG3719-PA 53..151 34..133 195 35 Plus