Clone Sequence Records
BO14546.3prime Sequence
487 bp (486 high quality bases) assembled on 2006-05-29
> BO14546.3prime
TTTAGGGGGGCGCNAAANGAATGGTATAGAAAGATTGTGTCCTCTGTAGG
GTGAGGTGGTGGGTGTGGTANAGNTTTATGGAGTAANTTGTGTAGGTATT
GGATGGTNTGNAGGACCCCCATTCGATTTACCACCTTGCCGTTGCTGATG
ACCACCAGTGAAGGAACGGACCCCACGTTGTAGTCAAGGGCCAGTTCCCC
ATGCTCATCAATATCGACCCGGGCCAATCTCACTCGACCTTCCTGCTCGG
ACACAACGTTCTCCAGTCGAGGGGCCAGAGCCTTGCATGGACAGCACCAG
CTGGCATGAAAGTCCACAACCACCGGCCGATCGCTATTGATCACACGTTG
CTCAAAGTCTTTTCTAGTCTCCACATCGAAAATCGGTTGCTTGCCAGTAC
TGGTCATTCCGCGATTAGCCTTCATCAAATTCATTAGGCGCTTTGCCCGG
AATAATCTTCTATAGCTGGACATGTCGACTGATAACT
BO14546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-PA | 438 | CG8517-RA | 1..355 | 473..119 | 1775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 732 | CG8517-RA | 99..518 | 473..54 | 1880 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19714405..19714654 | 303..54 | 1030 | 93.6 | Minus |
2R | 25286936 | 2R | 19714174..19714346 | 473..301 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:33:01 has no hits.
BO14546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:16 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-PA | 1..428 | 46..473 | 95 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:27 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-PA | 1..428 | 46..473 | 95 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:47:22 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..526 | 46..473 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:37 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..526 | 46..473 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:37 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19714174..19714346 | 301..473 | 100 | -> | Minus |
2R | 19714408..19714662 | 46..300 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:47:22 Download gff for
BO14546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15601679..15601851 | 301..473 | 100 | -> | Minus |
arm_2R | 15601913..15602167 | 46..300 | 92 | | Minus |
BO14546.5prime Sequence
467 bp (466 high quality bases) assembled on 2006-05-29
> BO14546.5prime
GAAGTTATCCCTCTTAGGGGCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGCCCGGGAGGGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CGCAAGCTTTCTAGACC
BO14546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-PA | 438 | CG8517-RA | 79..435 | 95..451 | 1785 | 100 | Plus |
CG8517-PA | 438 | CG8517-RA | 5..69 | 21..85 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 732 | CG8517-RA | 103..533 | 21..451 | 2080 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19714405..19714669 | 187..451 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 19714178..19714346 | 21..189 | 770 | 97 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:08:56 has no hits.
BO14546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:17 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-PA | 3..438 | 20..452 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:28 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-PA | 3..438 | 20..452 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:43:02 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 97..533 | 14..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:18 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 97..533 | 14..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:18 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19714172..19714346 | 14..189 | 95 | -> | Plus |
2R | 19714408..19714669 | 190..451 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:43:02 Download gff for
BO14546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15601677..15601851 | 14..189 | 95 | -> | Plus |
arm_2R | 15601913..15602174 | 190..451 | 100 | | Plus |
BO14546.complete Sequence
469 bp assembled on 2006-10-11
GenBank Submission: FJ633174
> BO14546.complete
GAAGTTATCAGTCGACATGTCCAGCTATAGAAGATTATTCCGGGCAAAGC
GCCTAATGAATTTGATGAAGGCTAATCGCGGAATGACCAGTACTGGCAAG
CAACCGATTTTCGATGTGGAGACTAGAAAAGACTTTGAGCAACGTGTGAT
CAATAGCGATCGGCCGGTGGTTGTGGACTTTCATGCCAGCTGGTGCTGTC
CATGCAAGGCTCTGGCCCCTCGACTGGAGAACGTTGTGTCCGAGCAGGAA
GGTCGAGTGAGATTGGCCCGGGTCGATATTGATGAGCATGGGGAACTGGC
CCTTGACTACAACGTGGGGTCCGTTCCTTCACTGGTGGTCATCAGCAACG
GCAAGGTGGTAAATCGAATGGTTGGCCTGCAGACCAGCGAATACCTACGC
AAGTGGCTCCATAAGGCGGTGCCACACCCACCACCTGAGGATACGGAAAA
CGCAAGCTTTCTAGACCAT
BO14546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 438 | CG8517-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-RA | 732 | CG8517-RA | 99..533 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19714405..19714669 | 187..451 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 19714174..19714346 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:11:02 has no hits.
BO14546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:51 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:53 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..533 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:53 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..533 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:51 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..533 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:18 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8517-RA | 99..533 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:18 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19714174..19714346 | 17..189 | 100 | -> | Plus |
2R | 19714408..19714669 | 190..453 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:53 Download gff for
BO14546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15601679..15601851 | 17..189 | 100 | -> | Plus |
arm_2R | 15601913..15602174 | 190..453 | 99 | | Plus |
BO14546.pep Sequence
Translation from 16 to 469
> BO14546.pep
MSSYRRLFRAKRLMNLMKANRGMTSTGKQPIFDVETRKDFEQRVINSDRP
VVVDFHASWCCPCKALAPRLENVVSEQEGRVRLARVDIDEHGELALDYNV
GSVPSLVVISNGKVVNRMVGLQTSEYLRKWLHKAVPHPPPEDTENASFLD
H
BO14546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8517-PA | 145 | CG8517-PA | 1..145 | 1..145 | 761 | 100 | Plus |
CG8993-PA | 142 | CG8993-PA | 14..138 | 11..135 | 347 | 52 | Plus |
TrxT-PB | 157 | CG3315-PB | 2..104 | 31..133 | 201 | 36.5 | Plus |
TrxT-PA | 157 | CG3315-PA | 2..104 | 31..133 | 201 | 36.5 | Plus |
CG3719-PA | 160 | CG3719-PA | 53..151 | 34..133 | 195 | 35 | Plus |