Clone Sequence Records
BO14548.3prime Sequence
902 bp (754 high quality bases) assembled on 2006-05-29
> BO14548.3prime
ATGGTCTAGAAAGCTTGCTTTTGGATTATTGCTCCTTGGAACGGTGAACG
TTTCGGTGGCATCAGTTAGCTCGGTTAGCTCAGTGTTGCCAGTTCCATCG
GCGATTAGATTGGATTGACGCGGCGTGGTCGAGAATACGACTCCGAATCG
TTGAGCCTTCATCTTGATCTGGTCCAGTCGCCCATCGATTTCGGAGAAAA
TTTCCTCGCTTAAAACCTTCAACTCGGCGATCTCGTAGCGAAAGTCGTTG
ATATGTCGAGCGATCAGGGCATGTCGTAGATATCGACGGCTATAGCGAAA
GCCACTGGACATATTCGTTTTGGTCACGAGCAGGGCCATCTTTTTGGTAA
GCTTGACGGCGGCCAAGGAGCGATGTCTCTGCTGGCAGTTGCTTAGATCG
TTGGCGCACTCCTCAGTCCAGGCCAAGTGGACGCGGTTCTGTCCCCGAAT
ATCGGCAATTCGTCGCTCTAGACACGTCCACGTTTCGCCCAAACTGCGCA
ACATATTCCGGAGGGCATCGTAGCGGCACAGGAGTTCGGTTAGTTGGCAC
TGAATGTGATGCTGGGCACGTTGAATGCACCGTATCTCCGATTGCTTCGC
ATTCAGGCCACTGCAGGAGATCGGATCCTCTGGCATTACCGATGGTTGGC
TAATATCCTCCAATTGCTGATTCCTGCGGAGTTGACTACGCAATATATCG
ATTCTTTTCAATATCTCGTCCAGACCCTGAATGGTAATCAGGGTTTTTGT
CTCCTCTTCGGTGGTTATGCCCTCCTCGCCCATTCCGCATGGCAGTATTT
CCATCTCCTCCTCCTGTGAGTCGGTTTCCTCATCATCTGGTACTCGATCC
AAGGAAGGGGCTAACCTCTGATAGCCTGCCGAAATCATGTCGACTGGATA
CT
BO14548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15468-PA | 873 | SIP3-RA | 1..870 | 888..19 | 4275 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 220..1089 | 888..19 | 4305 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960040..4960909 | 19..888 | 4305 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:03:34 has no hits.
BO14548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:20 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-PA | 1..873 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:33 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15468-PA | 1..873 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:15 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..1092 | 15..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:05:55 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..1092 | 15..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:05:55 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960037..4960914 | 15..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:15 Download gff for
BO14548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854070..4854947 | 15..895 | 99 | | Plus |
BO14548.5prime Sequence
845 bp (731 high quality bases) assembled on 2006-05-29
> BO14548.5prime
GAAGTTATCAGTCGACATGATTTCGCCAGGCTATCAGAGGTTAGGCCCTT
CCTTGGATCGAGTACCAGATGATGAGGAAACCGACTCACAGGAGGAGGAG
ATGGAAATACTGCCATGCGGAATGGGCGAGGAGGGCATAACCACCGATGA
GGAGACAAAAACCCTGATTACCATTCAGGGTCTGGACGAGATATTGAAAA
GAATCGATATATTGCGTAGTCAACTCCGCAGGAATCAGCAATTGGAGGAT
ATTAGCCAACCATCGGTAATGCCAGAGGATCCGATCTCCTGCAGTGGCCT
GAATGCGAAGCAATCGGAGATACGGTGCATTCAACGTGCCCAGCATCACA
TTCAGTGCCAACTAACCGAACTCCTGTGCCGCTACGATGCCCTCCGGAAT
ATGTTGCGCAGTTTGGGCGAAACGTGGACGTGTCTAGAGCGACGAATTGC
CGATATTCGGGGACAGAACCGCGTCCACTTGGCCTGGACTGAGGAGTGCG
CCAACGATCTAAGCAACTGCCAGCAGAGACATCGCTCCTTGGCCGCCGTC
AAGCTTACCAAAAAGATGGCCCTGCTCGTGACCAAAACGAATATGTCCAG
TGGCTTTCGCTATAGCCGTCGATATCTACGACATGCCCTGATCGCTCGAC
ATATCAACGACTTTCGCTACGAGATCGCCGAGTTGAAGGTTTTAAGCGAG
GAAATTTTCTCCGAAATCGATGGGCGACTGGACCAGATCAAGATGAAGGC
TCAACGATTCGGAGTCGTATTCTCGACCACGCCGCGTCAATCCCATCTAA
TCGCCGATGGAACTGGCAACACTGAGCTAACCGAGCTAACTGATG
BO14548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15468-PA | 873 | SIP3-RA | 1..829 | 17..845 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 220..1048 | 17..845 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960081..4960909 | 845..17 | 4130 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:23:36 has no hits.
BO14548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:21 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:34 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15468-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:46:00 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..1048 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:05 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 215..1048 | 10..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:05 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960081..4960914 | 10..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:46:00 Download gff for
BO14548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854114..4854947 | 10..845 | 99 | | Minus |
BO14548.complete Sequence
904 bp assembled on 2006-10-11
GenBank Submission: FJ633175
> BO14548.complete
GAAGTTATCAGTCGACATGATTTCGCCAGGCTATCAGAGGTTAGGCCCTT
CCTTGGATCGAGTACCAGATGATGAGGAAACCGACTCACAGGAGGAGGAG
ATGGAAATACTGCCATGCGGAATGGGCGAGGAGGGCATAACCACCGATGA
GGAGACAAAAACCCTGATTACCATTCAGGGTCTGGACGAGATATTGAAAA
GAATCGATATATTGCGTAGTCAACTCCGCAGGAATCAGCAATTGGAGGAT
ATTAGCCAACCATCGGTAATGCCAGAGGATCCGATCTCCTGCAGTGGCCT
GAATGCGAAGCAATCGGAGATACGGTGCATTCAACGTGCCCAGCATCACA
TTCAGTGCCAACTAACCGAACTCCTGTGCCGCTACGATGCCCTCCGGAAT
ATGTTGCGCAGTTTGGGCGAAACGTGGACGTGTCTAGAGCGACGAATTGC
CGATATTCGGGGACAGAACCGCGTCCACTTGGCCTGGACTGAGGAGTGCG
CCAACGATCTAAGCAACTGCCAGCAGAGACATCGCTCCTTGGCCGCCGTC
AAGCTTACCAAAAAGATGGCCCTGCTCGTGACCAAAACGAATATGTCCAG
TGGCTTTCGCTATAGCCGTCGATATCTACGACATGCCCTGATCGCTCGAC
ATATCAACGACTTTCGCTACGAGATCGCCGAGTTGAAGGTTTTAAGCGAG
GAAATTTTCTCCGAAATCGATGGGCGACTGGACCAGATCAAGATGAAGGC
TCAACGATTCGGAGTCGTATTCTCGACCACGCCGCGTCAATCCAATCTAA
TCGCCGATGGAACTGGCAACACTGAGCTAACCGAGCTAACTGATGCCACC
GAAACGTTCACCGTTCCAAGGAGCAATAATCCAAAAGCAAGCTTTCTAGA
CCAT
BO14548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 873 | CG15468-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-RA | 1200 | CG15468-RA | 220..1089 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4960040..4960909 | 886..17 | 4350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:13 has no hits.
BO14548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:52 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:55 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 87..964 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:35 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 220..1085 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:53 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 87..964 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:02 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIP3-RA | 220..1085 | 17..882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:02 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4960044..4960909 | 17..882 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:35 Download gff for
BO14548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4854077..4854942 | 17..882 | 100 | | Minus |
BO14548.pep Sequence
Translation from 16 to 904
> BO14548.pep
MISPGYQRLGPSLDRVPDDEETDSQEEEMEILPCGMGEEGITTDEETKTL
ITIQGLDEILKRIDILRSQLRRNQQLEDISQPSVMPEDPISCSGLNAKQS
EIRCIQRAQHHIQCQLTELLCRYDALRNMLRSLGETWTCLERRIADIRGQ
NRVHLAWTEECANDLSNCQQRHRSLAAVKLTKKMALLVTKTNMSSGFRYS
RRYLRHALIARHINDFRYEIAELKVLSEEIFSEIDGRLDQIKMKAQRFGV
VFSTTPRQSNLIADGTGNTELTELTDATETFTVPRSNNPKASFLDH
BO14548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIP3-PA | 290 | CG15468-PA | 1..290 | 1..290 | 1494 | 100 | Plus |
| CG14556-PB | 334 | CG14556-PB | 119..301 | 66..248 | 194 | 25.8 | Plus |
