Clone Sequence Records
BO14549.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-05-29
> BO14549.3prime
ATGGTCTAGAAAGCTTGCCTCGTACACATCCTCCTTGTCGGCGACGTACT
TAATAATGTCGGCAGGTTTAAGCAGCTTCTCGGCATCAGAGTCGGGGATC
TCGAAACCGAACTCGTCCTCCATGGCCATGATGACCTCCACGTGGTCCAA
GGAATCCAGTCCCAAGTCGTTGATGAAGTGCGACTCAACGTTGAGCTTTT
CGGCGGTCACTTTGTCGTAGGCGGAGACAACCTTTAGCACGCGGAACTTG
ATGTCCTCGATGGTGCTCTTGGCCGAGTAGCTGCGCACACCGAACTTTTG
GCTCAACTGGCTGGTCATCGATGGCACGGCGATCCTGTGCATCATCCTGG
AGGCCTGTGATTGGATGAGAATGCCGGAGGCGACCCTCCTTGGGGCCAAA
GTGGCCGCCAGTCGACTGCAGCTGCGCGCGATCTGTGTGAACGACATGTC
GACTGATAACT
BO14549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9160-PB | 432 | mtacp1-RB | 1..429 | 447..19 | 2145 | 100 | Minus |
CG9160-PA | 459 | mtacp1-RA | 277..456 | 198..19 | 900 | 100 | Minus |
CG9160-PA | 459 | mtacp1-RA | 1..150 | 447..298 | 750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..538 | 451..19 | 2150 | 99.8 | Minus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 451..210 | 1195 | 99.6 | Minus |
mtacp1-RC | 739 | CG9160-RC | 473..652 | 198..19 | 900 | 100 | Minus |
mtacp1-RA | 740 | CG9160-RA | 386..565 | 198..19 | 900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331456 | 197..19 | 895 | 100 | Minus |
3L | 28110227 | 3L | 1330137..1330290 | 451..298 | 755 | 99.4 | Minus |
3L | 28110227 | 3L | 1330863..1330964 | 297..196 | 510 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 18:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 120..29 | 117 | 61.3 | Minus |
BO14549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:22 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:36 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:46 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 11..451 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:31 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 11..451 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:31 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1330137..1330290 | 298..451 | 99 | -> | Minus |
3L | 1330863..1330964 | 196..297 | 100 | -> | Minus |
3L | 1331280..1331462 | 11..195 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:46 Download gff for
BO14549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330137..1330290 | 298..451 | 99 | -> | Minus |
arm_3L | 1330863..1330964 | 196..297 | 100 | -> | Minus |
arm_3L | 1331280..1331462 | 11..195 | 97 | | Minus |
BO14549.5prime Sequence
461 bp (460 high quality bases) assembled on 2006-05-29
> BO14549.5prime
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGGCAAG
CTTTCTAGACC
BO14549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9160-PB | 432 | mtacp1-RB | 1..429 | 17..445 | 2145 | 100 | Plus |
CG9160-PA | 459 | mtacp1-RA | 277..456 | 266..445 | 900 | 100 | Plus |
CG9160-PA | 459 | mtacp1-RA | 1..150 | 17..166 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..538 | 13..445 | 2150 | 99.8 | Plus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 13..254 | 1195 | 99.6 | Plus |
mtacp1-RC | 739 | CG9160-RC | 473..652 | 266..445 | 900 | 100 | Plus |
mtacp1-RA | 740 | CG9160-RA | 386..565 | 266..445 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331456 | 267..445 | 895 | 100 | Plus |
3L | 28110227 | 3L | 1330137..1330290 | 13..166 | 755 | 99.4 | Plus |
3L | 28110227 | 3L | 1330863..1330964 | 167..268 | 510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 344..435 | 117 | 61.3 | Plus |
BO14549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:23 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:38 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9160-PB | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:21 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 13..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:02 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 106..544 | 13..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:02 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1330137..1330290 | 13..166 | 99 | -> | Plus |
3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
3L | 1331280..1331462 | 269..453 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:21 Download gff for
BO14549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330137..1330290 | 13..166 | 99 | -> | Plus |
arm_3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
arm_3L | 1331280..1331462 | 269..453 | 97 | | Plus |
BO14549.complete Sequence
463 bp assembled on 2006-10-11
GenBank Submission: FJ633176
> BO14549.complete
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGGCAAG
CTTTCTAGACCAT
BO14549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 432 | CG9160-PB | 1..429 | 17..445 | 2145 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 1..238 | 17..254 | 1190 | 100 | Plus |
mtacp1-RC | 546 | CG9160-PC | 364..543 | 266..445 | 900 | 100 | Plus |
mtacp1-RA | 459 | CG9160-PA | 277..456 | 266..445 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-RB | 625 | CG9160-RB | 106..538 | 13..445 | 2150 | 99.8 | Plus |
mtacp1-RC | 739 | CG9160-RC | 106..347 | 13..254 | 1195 | 99.6 | Plus |
mtacp1-RC | 739 | CG9160-RC | 473..652 | 266..445 | 900 | 100 | Plus |
mtacp1-RA | 740 | CG9160-RA | 386..565 | 266..445 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331278..1331456 | 267..445 | 895 | 100 | Plus |
3L | 28110227 | 3L | 1330137..1330290 | 13..166 | 755 | 99.4 | Plus |
3L | 28110227 | 3L | 1330863..1330964 | 167..268 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 3462..3553 | 344..435 | 117 | 61.3 | Plus |
BO14549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:55 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:56 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 249..687 | 13..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:02 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 110..538 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:55 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 249..687 | 13..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:39 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtacp1-RB | 110..538 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:39 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331280..1331456 | 269..447 | 98 | | Plus |
3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:02 Download gff for
BO14549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1330863..1330964 | 167..268 | 100 | -> | Plus |
arm_3L | 1331280..1331456 | 269..447 | 98 | | Plus |
arm_3L | 1330141..1330290 | 17..166 | 100 | -> | Plus |
BO14549.pep Sequence
Translation from 16 to 463
> BO14549.pep
MSFTQIARSCSRLAATLAPRRVASGILIQSQASRMMHRIAVPSMTSQLSQ
KFGVRSYSAKSTIEDIKFRVLKVVSAYDKVTAEKLNVESHFINDLGLDSL
DHVEVIMAMEDEFGFEIPDSDAEKLLKPADIIKYVADKEDVYEASFLDH
BO14549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtacp1-PB | 143 | CG9160-PB | 1..143 | 1..143 | 703 | 100 | Plus |
mtacp1-PC | 181 | CG9160-PC | 1..181 | 1..143 | 637 | 76.8 | Plus |
mtacp1-PA | 152 | CG9160-PA | 1..152 | 1..143 | 572 | 81.6 | Plus |