Clone BO14549 Report

Search the DGRC for BO14549

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptmtacp1-RB
Protein status:BO14549.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO14549.3prime Sequence

461 bp (460 high quality bases) assembled on 2006-05-29

> BO14549.3prime
ATGGTCTAGAAAGCTTGCCTCGTACACATCCTCCTTGTCGGCGACGTACT
TAATAATGTCGGCAGGTTTAAGCAGCTTCTCGGCATCAGAGTCGGGGATC
TCGAAACCGAACTCGTCCTCCATGGCCATGATGACCTCCACGTGGTCCAA
GGAATCCAGTCCCAAGTCGTTGATGAAGTGCGACTCAACGTTGAGCTTTT
CGGCGGTCACTTTGTCGTAGGCGGAGACAACCTTTAGCACGCGGAACTTG
ATGTCCTCGATGGTGCTCTTGGCCGAGTAGCTGCGCACACCGAACTTTTG
GCTCAACTGGCTGGTCATCGATGGCACGGCGATCCTGTGCATCATCCTGG
AGGCCTGTGATTGGATGAGAATGCCGGAGGCGACCCTCCTTGGGGCCAAA
GTGGCCGCCAGTCGACTGCAGCTGCGCGCGATCTGTGTGAACGACATGTC
GACTGATAACT

BO14549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9160-PB 432 mtacp1-RB 1..429 447..19 2145 100 Minus
CG9160-PA 459 mtacp1-RA 277..456 198..19 900 100 Minus
CG9160-PA 459 mtacp1-RA 1..150 447..298 750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..538 451..19 2150 99.8 Minus
mtacp1-RC 739 CG9160-RC 106..347 451..210 1195 99.6 Minus
mtacp1-RC 739 CG9160-RC 473..652 198..19 900 100 Minus
mtacp1-RA 740 CG9160-RA 386..565 198..19 900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331456 197..19 895 100 Minus
3L 28110227 3L 1330137..1330290 451..298 755 99.4 Minus
3L 28110227 3L 1330863..1330964 297..196 510 100 Minus
Blast to na_te.dros performed 2015-01-30 18:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 120..29 117 61.3 Minus

BO14549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:22 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 15..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:36 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 15..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:46 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 11..451 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:31 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 11..451 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:31 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1330137..1330290 298..451 99 -> Minus
3L 1330863..1330964 196..297 100 -> Minus
3L 1331280..1331462 11..195 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:46 Download gff for BO14549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330137..1330290 298..451 99 -> Minus
arm_3L 1330863..1330964 196..297 100 -> Minus
arm_3L 1331280..1331462 11..195 97   Minus

BO14549.5prime Sequence

461 bp (460 high quality bases) assembled on 2006-05-29

> BO14549.5prime
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGGCAAG
CTTTCTAGACC

BO14549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9160-PB 432 mtacp1-RB 1..429 17..445 2145 100 Plus
CG9160-PA 459 mtacp1-RA 277..456 266..445 900 100 Plus
CG9160-PA 459 mtacp1-RA 1..150 17..166 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..538 13..445 2150 99.8 Plus
mtacp1-RC 739 CG9160-RC 106..347 13..254 1195 99.6 Plus
mtacp1-RC 739 CG9160-RC 473..652 266..445 900 100 Plus
mtacp1-RA 740 CG9160-RA 386..565 266..445 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331456 267..445 895 100 Plus
3L 28110227 3L 1330137..1330290 13..166 755 99.4 Plus
3L 28110227 3L 1330863..1330964 167..268 510 100 Plus
Blast to na_te.dros performed 2015-02-12 00:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 344..435 117 61.3 Plus

BO14549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:23 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 17..449 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:38 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9160-PB 1..432 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:21 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 13..453 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:02 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 106..544 13..453 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:02 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1330137..1330290 13..166 99 -> Plus
3L 1330863..1330964 167..268 100 -> Plus
3L 1331280..1331462 269..453 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:21 Download gff for BO14549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330137..1330290 13..166 99 -> Plus
arm_3L 1330863..1330964 167..268 100 -> Plus
arm_3L 1331280..1331462 269..453 97   Plus

BO14549.complete Sequence

463 bp assembled on 2006-10-11

GenBank Submission: FJ633176

> BO14549.complete
GAAGTTATCAGTCGACATGTCGTTCACACAGATCGCGCGCAGCTGCAGTC
GACTGGCGGCCACTTTGGCCCCAAGGAGGGTCGCCTCCGGCATTCTCATC
CAATCACAGGCCTCCAGGATGATGCACAGGATCGCCGTGCCATCGATGAC
CAGCCAGTTGAGCCAAAAGTTCGGTGTGCGCAGCTACTCGGCCAAGAGCA
CCATCGAGGACATCAAGTTCCGCGTGCTAAAGGTTGTCTCCGCCTACGAC
AAAGTGACCGCCGAAAAGCTCAACGTTGAGTCGCACTTCATCAACGACTT
GGGACTGGATTCCTTGGACCACGTGGAGGTCATCATGGCCATGGAGGACG
AGTTCGGTTTCGAGATCCCCGACTCTGATGCCGAGAAGCTGCTTAAACCT
GCCGACATTATTAAGTACGTCGCCGACAAGGAGGATGTGTACGAGGCAAG
CTTTCTAGACCAT

BO14549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 432 CG9160-PB 1..429 17..445 2145 100 Plus
mtacp1-RC 546 CG9160-PC 1..238 17..254 1190 100 Plus
mtacp1-RC 546 CG9160-PC 364..543 266..445 900 100 Plus
mtacp1-RA 459 CG9160-PA 277..456 266..445 900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-RB 625 CG9160-RB 106..538 13..445 2150 99.8 Plus
mtacp1-RC 739 CG9160-RC 106..347 13..254 1195 99.6 Plus
mtacp1-RC 739 CG9160-RC 473..652 266..445 900 100 Plus
mtacp1-RA 740 CG9160-RA 386..565 266..445 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331278..1331456 267..445 895 100 Plus
3L 28110227 3L 1330137..1330290 13..166 755 99.4 Plus
3L 28110227 3L 1330863..1330964 167..268 510 100 Plus
Blast to na_te.dros performed 2014-11-27 16:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 3462..3553 344..435 117 61.3 Plus

BO14549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:55 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 1..432 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:56 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 249..687 13..453 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:02 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 110..538 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:55 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 249..687 13..453 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:39 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
mtacp1-RB 110..538 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:39 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1331280..1331456 269..447 98   Plus
3L 1330863..1330964 167..268 100 -> Plus
3L 1330141..1330290 17..166 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:02 Download gff for BO14549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1330863..1330964 167..268 100 -> Plus
arm_3L 1331280..1331456 269..447 98   Plus
arm_3L 1330141..1330290 17..166 100 -> Plus

BO14549.pep Sequence

Translation from 16 to 463

> BO14549.pep
MSFTQIARSCSRLAATLAPRRVASGILIQSQASRMMHRIAVPSMTSQLSQ
KFGVRSYSAKSTIEDIKFRVLKVVSAYDKVTAEKLNVESHFINDLGLDSL
DHVEVIMAMEDEFGFEIPDSDAEKLLKPADIIKYVADKEDVYEASFLDH

BO14549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
mtacp1-PB 143 CG9160-PB 1..143 1..143 703 100 Plus
mtacp1-PC 181 CG9160-PC 1..181 1..143 637 76.8 Plus
mtacp1-PA 152 CG9160-PA 1..152 1..143 572 81.6 Plus