Clone Sequence Records
BO14552.3prime Sequence
851 bp (805 high quality bases) assembled on 2006-05-29
> BO14552.3prime
ATGGTCTAGAAAGCTTGCAATATTTTGGCTCTTAAGGAATTCAAATAAAT
ACTCGTAGGTCACCAGGAGCATGGCCCCACCAGGGCCGACACGCAGGATC
ATCGCCCCCAGACCCTTGAACAACGATCGAAAACCCTCCTCCTTGAAGGT
TGATTTAATCGTGCTTATGGTCCACTGGTACTTCACCTCGCCCTTCACTG
GCTGGGGTCCTTGAATCCTGCACTTGGCCATATCCAAAGTAACACTCATC
ACGCAAGCCAGGGAACTGGCCAACCCAGCTATGATGACCTTTCGCAGGAT
GTTGTATGTCTTATCCTCCGGGCTTGGAACAATGTCTTTAAGCGCATTGT
AAAAACCAAAGAATCCAAAGTGAAAGACGGCATTTCGAGCCACTAGTGCA
GTGATACCCCGATACAACCCTTTGATGCCATAGCCATCATGCTTGATTAT
GTACTTTACGACCGACAGTGTTTTCAAGCGTTTCCCCCGATGAGCCTGCT
GAGTGATCTTGACCACCTCAAAGGGATTGACGAGAAAGGACTCCAGAATT
GCGGCCATTGAACCGGACATGGCGTGGGTCAGCGGAGTTGGTTGAGGGGC
TCCAAACTGGAAGTACGGTTTAAGGCTCTCGTACATCAAAAACTTGCCGC
CCCTCTTTGGAGTTTCCACGCAGATCGGGGGCACAATACCCTTCCATAGG
GAAGACAACCCTTCGTAGCGATATATTTTGACGATGGCATCCAGAGGACA
GGTGTAAACAACCTCGCCGCCAAATGGATGGGCACCCTGTATCTGCATCC
GGGTCTTAACCACATCGAGGGGATGAAAGCAGATAATCTCGATGAAGCCC
G
BO14552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PA | 903 | CG9582-RA | 68..900 | 851..19 | 4140 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 308..1140 | 851..19 | 4150 | 99.9 | Minus |
CG9582-RA | 983 | CG9582-RA | 134..966 | 851..19 | 4150 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024467..9025299 | 19..851 | 4150 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:03:55 has no hits.
BO14552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:28 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 68..903 | 15..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:44 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 68..903 | 15..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:48 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 134..974 | 10..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:15 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 134..974 | 10..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:15 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024459..9025299 | 10..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:48 Download gff for
BO14552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024459..9025299 | 10..851 | 99 | | Plus |
BO14552.5prime Sequence
816 bp (738 high quality bases) assembled on 2006-05-29
> BO14552.5prime
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTT
BO14552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PA | 903 | CG9582-RA | 1..800 | 17..816 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 241..1040 | 17..816 | 3985 | 99.9 | Plus |
CG9582-RA | 983 | CG9582-RA | 67..866 | 17..816 | 3985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024567..9025366 | 816..17 | 3985 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:23:23 has no hits.
BO14552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:29 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 1..800 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:46 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-PA | 1..800 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:58 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 62..866 | 11..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:04 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 62..866 | 11..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:04 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024567..9025371 | 11..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:58 Download gff for
BO14552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024567..9025371 | 11..816 | 99 | | Minus |
BO14552.complete Sequence
934 bp assembled on 2006-10-11
GenBank Submission: FJ638730
> BO14552.complete
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTTCAAGGGTCTGGGGGCGATGATCCTGCGTGTCGGC
CCTGGTGGGGCCATGCTCCTGGTGACCTACGAGTATTTATTTGAATTCCT
TAAGAGCCAAAATATTGCAAGCTTTCTAGACCAT
BO14552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 903 | CG9582-PB | 1..900 | 17..916 | 4485 | 99.9 | Plus |
CG9582-RA | 903 | CG9582-PA | 1..900 | 17..916 | 4485 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-RB | 1287 | CG9582-RB | 241..1140 | 17..916 | 4485 | 99.9 | Plus |
CG9582-RA | 983 | CG9582-RA | 67..966 | 17..916 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9024467..9025366 | 916..17 | 4485 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:16 has no hits.
BO14552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:57 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:58 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 34..946 | 11..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:17 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 67..966 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:57 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 34..946 | 11..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:34 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9582-RA | 67..966 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:34 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9024465..9025366 | 17..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:17 Download gff for
BO14552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9024465..9025366 | 17..918 | 99 | | Minus |
BO14552.pep Sequence
Translation from 16 to 934
> BO14552.pep
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
ASFLDH
BO14552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9582-PB | 300 | CG9582-PB | 1..300 | 1..300 | 1563 | 100 | Plus |
CG9582-PA | 300 | CG9582-PA | 1..300 | 1..300 | 1563 | 100 | Plus |
CG5254-PA | 306 | CG5254-PA | 14..301 | 13..295 | 770 | 52.1 | Plus |
CG5254-PB | 237 | CG5254-PB | 1..232 | 65..295 | 666 | 53.4 | Plus |
aralar1-PB | 679 | CG2139-PB | 328..600 | 15..291 | 270 | 28 | Plus |