Clone BO14552 Report

Search the DGRC for BO14552

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG9582-RA
Protein status:BO14552.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO14552.3prime Sequence

851 bp (805 high quality bases) assembled on 2006-05-29

> BO14552.3prime
ATGGTCTAGAAAGCTTGCAATATTTTGGCTCTTAAGGAATTCAAATAAAT
ACTCGTAGGTCACCAGGAGCATGGCCCCACCAGGGCCGACACGCAGGATC
ATCGCCCCCAGACCCTTGAACAACGATCGAAAACCCTCCTCCTTGAAGGT
TGATTTAATCGTGCTTATGGTCCACTGGTACTTCACCTCGCCCTTCACTG
GCTGGGGTCCTTGAATCCTGCACTTGGCCATATCCAAAGTAACACTCATC
ACGCAAGCCAGGGAACTGGCCAACCCAGCTATGATGACCTTTCGCAGGAT
GTTGTATGTCTTATCCTCCGGGCTTGGAACAATGTCTTTAAGCGCATTGT
AAAAACCAAAGAATCCAAAGTGAAAGACGGCATTTCGAGCCACTAGTGCA
GTGATACCCCGATACAACCCTTTGATGCCATAGCCATCATGCTTGATTAT
GTACTTTACGACCGACAGTGTTTTCAAGCGTTTCCCCCGATGAGCCTGCT
GAGTGATCTTGACCACCTCAAAGGGATTGACGAGAAAGGACTCCAGAATT
GCGGCCATTGAACCGGACATGGCGTGGGTCAGCGGAGTTGGTTGAGGGGC
TCCAAACTGGAAGTACGGTTTAAGGCTCTCGTACATCAAAAACTTGCCGC
CCCTCTTTGGAGTTTCCACGCAGATCGGGGGCACAATACCCTTCCATAGG
GAAGACAACCCTTCGTAGCGATATATTTTGACGATGGCATCCAGAGGACA
GGTGTAAACAACCTCGCCGCCAAATGGATGGGCACCCTGTATCTGCATCC
GGGTCTTAACCACATCGAGGGGATGAAAGCAGATAATCTCGATGAAGCCC
G

BO14552.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PA 903 CG9582-RA 68..900 851..19 4140 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 308..1140 851..19 4150 99.9 Minus
CG9582-RA 983 CG9582-RA 134..966 851..19 4150 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024467..9025299 19..851 4150 99.9 Plus
Blast to na_te.dros performed on 2015-02-08 13:03:55 has no hits.

BO14552.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:28 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 68..903 15..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:44 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 68..903 15..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:48 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 134..974 10..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:15 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 134..974 10..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:15 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9024459..9025299 10..851 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:48 Download gff for BO14552.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024459..9025299 10..851 99   Plus

BO14552.5prime Sequence

816 bp (738 high quality bases) assembled on 2006-05-29

> BO14552.5prime
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTT

BO14552.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PA 903 CG9582-RA 1..800 17..816 3975 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 241..1040 17..816 3985 99.9 Plus
CG9582-RA 983 CG9582-RA 67..866 17..816 3985 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024567..9025366 816..17 3985 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 01:23:23 has no hits.

BO14552.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:29 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 1..800 17..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:46 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-PA 1..800 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:58 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 62..866 11..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:04 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 62..866 11..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:04 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9024567..9025371 11..816 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:58 Download gff for BO14552.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024567..9025371 11..816 99   Minus

BO14552.complete Sequence

934 bp assembled on 2006-10-11

GenBank Submission: FJ638730

> BO14552.complete
GAAGTTATCAGTCGACATGGCGACCCGTTCTGAAGAGACGGTCCGTTCAC
TGGCGCATTGGCAATTTTTGGCTGGCGGATTGTCGGGCTTCATCGAGATT
ATCTGCTTTCATCCCCTCGATGTGGTTAAGACCCGGATGCAGATACAGGG
TGCCCATCCATTTGGCGGCGAGGTTGTTTACACCTGTCCTCTGGATGCCA
TCGTCAAAATATATCGCTACGAAGGGTTGTCTTCCCTATGGAAGGGTATT
GTGCCCCCGATCTGCGTGGAAACTCCAAAGAGGGGCGGCAAGTTTTTGAT
GTACGAGAGCCTTAAACCGTACTTCCAGTTTGGAGCCCCTCAACCAACTC
CGCTGACCCACGCCATGTCCGGTTCAATGGCCGCAATTCTGGAGTCCTTT
CTCGTCAATCCCTTTGAGGTGGTCAAGATCACTCAGCAGGCTCATCGGGG
GAAACGCTTGAAAACACTGTCGGTCGTAAAGTACATAATCAAGCATGATG
GCTATGGCATCAAAGGGTTGTATCGGGGTATCACTGCACTAGTGGCTCGA
AATGCCGTCTTTCACTTTGGATTCTTTGGTTTTTACAATGCGCTTAAAGA
CATTGTTCCAAGCCCGGAGGATAAGACATACAACATCCTGCGAAAGGTCA
TCATAGCTGGGTTGGCCAGTTCCCTGGCTTGCGTGATGAGTGTTACTTTG
GATATGGCCAAGTGCAGGATTCAAGGACCCCAGCCAGTGAAGGGCGAGGT
GAAGTACCAGTGGACCATAAGCACGATTAAATCAACCTTCAAGGAGGAGG
GTTTTCGATCGTTGTTCAAGGGTCTGGGGGCGATGATCCTGCGTGTCGGC
CCTGGTGGGGCCATGCTCCTGGTGACCTACGAGTATTTATTTGAATTCCT
TAAGAGCCAAAATATTGCAAGCTTTCTAGACCAT

BO14552.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 903 CG9582-PB 1..900 17..916 4485 99.9 Plus
CG9582-RA 903 CG9582-PA 1..900 17..916 4485 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RB 1287 CG9582-RB 241..1140 17..916 4485 99.9 Plus
CG9582-RA 983 CG9582-RA 67..966 17..916 4485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024467..9025366 916..17 4485 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 16:39:16 has no hits.

BO14552.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:57 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:58 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 34..946 11..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:17 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 67..966 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:57 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 34..946 11..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:34 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 67..966 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:34 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024465..9025366 17..918 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:17 Download gff for BO14552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024465..9025366 17..918 99   Minus

BO14552.pep Sequence

Translation from 16 to 934

> BO14552.pep
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
ASFLDH

BO14552.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PB 300 CG9582-PB 1..300 1..300 1563 100 Plus
CG9582-PA 300 CG9582-PA 1..300 1..300 1563 100 Plus
CG5254-PA 306 CG5254-PA 14..301 13..295 770 52.1 Plus
CG5254-PB 237 CG5254-PB 1..232 65..295 666 53.4 Plus
aralar1-PB 679 CG2139-PB 328..600 15..291 270 28 Plus