Clone BO14556 Report

Search the DGRC for BO14556

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG10326-RA
Protein status:BO14556.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO14556.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-05-29

> BO14556.3prime
ATGGTCTAGAAAGCTTGCCTGCAGCTTCCTTTTGCCGCACTGGATCTTCT
CGTTAATAATCTTCGAGGCCCTTTGGGTGATGGCCTTAAAAATGTCCTTG
TTCTGTAGTCCTGGCCACATGAGGATGAGTAGGGTGGCCAAGTACATAAG
CAGTAGATTGTTAATGATGGCTCCAATCCAGGCCATAGCCAAAAGACCCA
AACTCATGACGATTACAAACACTGTGGACTTCCGCTCGTTGAAGAGGTAC
TCGTACCAGACCACCAGGCTGCCCTTGACGGCGCACACCTGGCCGCACAC
GTCCTCGAACTTGGCCTCCTGGTCGCCATCCCAGTTGACTCCGCCAAAGA
TCAGGCGCGACACCATGGGGAATGCGTAGTTCAGCAAAATGCTAATGACA
CCGAGCAGCGACAGCAGGGTAATCAGCGACAAGTCCAGGTACCACAGCAC
CAGGTACAGGCAGCTGATGACGCCAAACACCACTCCGGCGTAGTACTGCT
TCTCCCAGGTTAGCACGCCGTACGCTCCCACGATGGCTGTCCGGAAAGGC
TCCAAGTCGTGCTTTAATTTGTTAAGTGCTCGTTTCTGGTCAACCTGCGA
TGCTGCCATGTCGACTGATAACT

BO14556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-PA 594 CG10326-RA 1..591 609..19 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-RB 1178 CG10326-RB 164..755 610..19 2960 100 Minus
CG10326-RA 1294 CG10326-RA 280..871 610..19 2960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16644014..16644383 589..220 1850 100 Minus
3R 32079331 3R 16644547..16644748 220..19 1010 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:44:36 has no hits.

BO14556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:33 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-PA 1..594 15..609 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:52 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-PA 1..594 15..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:25 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 14..616 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:01 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 14..616 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:01 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16644018..16644383 220..585 100 -> Minus
3R 16644548..16644753 14..219 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:25 Download gff for BO14556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12469740..12470105 220..585 100 -> Minus
arm_3R 12470270..12470475 14..219 99   Minus

BO14556.5prime Sequence

623 bp (622 high quality bases) assembled on 2006-05-29

> BO14556.5prime
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGGCAAGCTTTCTAGACC

BO14556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-PA 594 CG10326-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-RB 1178 CG10326-RB 164..755 16..607 2960 100 Plus
CG10326-RA 1294 CG10326-RA 280..871 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16644014..16644383 37..406 1850 100 Plus
3R 32079331 3R 16644547..16644748 406..607 1010 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:19:29 has no hits.

BO14556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:34 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-PA 1..594 17..611 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:54 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-PA 1..594 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:08 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 10..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:41 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 10..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:41 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16644018..16644383 41..406 100 -> Plus
3R 16644548..16644753 407..612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:08 Download gff for BO14556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12469740..12470105 41..406 100 -> Plus
arm_3R 12470270..12470475 407..612 99   Plus

BO14556.complete Sequence

625 bp assembled on 2006-10-11

GenBank Submission: FJ633177

> BO14556.complete
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGGCAAGCTTTCTAGACCAT

BO14556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-RB 594 CG10326-PB 1..591 17..607 2955 100 Plus
CG10326-RA 594 CG10326-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-RB 1178 CG10326-RB 164..755 16..607 2960 100 Plus
CG10326-RA 1294 CG10326-RA 280..871 16..607 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16644014..16644383 37..406 1850 100 Plus
3R 32079331 3R 16644547..16644748 406..607 1010 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:33:11 has no hits.

BO14556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:45 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 1..594 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:30 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 10..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:55 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 281..871 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:45 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 274..876 10..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:51 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
CG10326-RA 281..871 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:51 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16643885..16643908 17..40 100 -> Plus
3R 16644018..16644383 41..406 100 -> Plus
3R 16644548..16644748 407..609 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:55 Download gff for BO14556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12469607..12469630 17..40 100 -> Plus
arm_3R 12469740..12470105 41..406 100 -> Plus
arm_3R 12470270..12470470 407..609 99   Plus

BO14556.pep Sequence

Translation from 16 to 625

> BO14556.pep
MAASQVDQKRALNKLKHDLEPFRTAIVGAYGVLTWEKQYYAGVVFGVISC
LYLVLWYLDLSLITLLSLLGVISILLNYAFPMVSRLIFGGVNWDGDQEAK
FEDVCGQVCAVKGSLVVWYEYLFNERKSTVFVIVMSLGLLAMAWIGAIIN
NLLLMYLATLLILMWPGLQNKDIFKAITQRASKIINEKIQCGKRKLQASF
LDH

BO14556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10326-PB 197 CG10326-PB 1..197 1..197 1011 100 Plus
CG10326-PA 197 CG10326-PB 1..197 1..197 1011 100 Plus