Clone Sequence Records
BO14556.3prime Sequence
623 bp (622 high quality bases) assembled on 2006-05-29
> BO14556.3prime
ATGGTCTAGAAAGCTTGCCTGCAGCTTCCTTTTGCCGCACTGGATCTTCT
CGTTAATAATCTTCGAGGCCCTTTGGGTGATGGCCTTAAAAATGTCCTTG
TTCTGTAGTCCTGGCCACATGAGGATGAGTAGGGTGGCCAAGTACATAAG
CAGTAGATTGTTAATGATGGCTCCAATCCAGGCCATAGCCAAAAGACCCA
AACTCATGACGATTACAAACACTGTGGACTTCCGCTCGTTGAAGAGGTAC
TCGTACCAGACCACCAGGCTGCCCTTGACGGCGCACACCTGGCCGCACAC
GTCCTCGAACTTGGCCTCCTGGTCGCCATCCCAGTTGACTCCGCCAAAGA
TCAGGCGCGACACCATGGGGAATGCGTAGTTCAGCAAAATGCTAATGACA
CCGAGCAGCGACAGCAGGGTAATCAGCGACAAGTCCAGGTACCACAGCAC
CAGGTACAGGCAGCTGATGACGCCAAACACCACTCCGGCGTAGTACTGCT
TCTCCCAGGTTAGCACGCCGTACGCTCCCACGATGGCTGTCCGGAAAGGC
TCCAAGTCGTGCTTTAATTTGTTAAGTGCTCGTTTCTGGTCAACCTGCGA
TGCTGCCATGTCGACTGATAACT
BO14556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PA | 594 | CG10326-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..755 | 610..19 | 2960 | 100 | Minus |
CG10326-RA | 1294 | CG10326-RA | 280..871 | 610..19 | 2960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 589..220 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 16644547..16644748 | 220..19 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:36 has no hits.
BO14556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:33 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:52 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:25 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 14..616 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:01 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 14..616 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:01 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16644018..16644383 | 220..585 | 100 | -> | Minus |
3R | 16644548..16644753 | 14..219 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:25 Download gff for
BO14556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12469740..12470105 | 220..585 | 100 | -> | Minus |
arm_3R | 12470270..12470475 | 14..219 | 99 | | Minus |
BO14556.5prime Sequence
623 bp (622 high quality bases) assembled on 2006-05-29
> BO14556.5prime
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGGCAAGCTTTCTAGACC
BO14556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PA | 594 | CG10326-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..755 | 16..607 | 2960 | 100 | Plus |
CG10326-RA | 1294 | CG10326-RA | 280..871 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 37..406 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 16644547..16644748 | 406..607 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:19:29 has no hits.
BO14556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:34 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:54 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-PA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:10:08 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 10..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:41 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 10..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:47:41 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16644018..16644383 | 41..406 | 100 | -> | Plus |
3R | 16644548..16644753 | 407..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:10:08 Download gff for
BO14556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12469740..12470105 | 41..406 | 100 | -> | Plus |
arm_3R | 12470270..12470475 | 407..612 | 99 | | Plus |
BO14556.complete Sequence
625 bp assembled on 2006-10-11
GenBank Submission: FJ633177
> BO14556.complete
GAAGTTATCAGTCGACATGGCAGCATCGCAGGTTGACCAGAAACGAGCAC
TTAACAAATTAAAGCACGACTTGGAGCCTTTCCGGACAGCCATCGTGGGA
GCGTACGGCGTGCTAACCTGGGAGAAGCAGTACTACGCCGGAGTGGTGTT
TGGCGTCATCAGCTGCCTGTACCTGGTGCTGTGGTACCTGGACTTGTCGC
TGATTACCCTGCTGTCGCTGCTCGGTGTCATTAGCATTTTGCTGAACTAC
GCATTCCCCATGGTGTCGCGCCTGATCTTTGGCGGAGTCAACTGGGATGG
CGACCAGGAGGCCAAGTTCGAGGACGTGTGCGGCCAGGTGTGCGCCGTCA
AGGGCAGCCTGGTGGTCTGGTACGAGTACCTCTTCAACGAGCGGAAGTCC
ACAGTGTTTGTAATCGTCATGAGTTTGGGTCTTTTGGCTATGGCCTGGAT
TGGAGCCATCATTAACAATCTACTGCTTATGTACTTGGCCACCCTACTCA
TCCTCATGTGGCCAGGACTACAGAACAAGGACATTTTTAAGGCCATCACC
CAAAGGGCCTCGAAGATTATTAACGAGAAGATCCAGTGCGGCAAAAGGAA
GCTGCAGGCAAGCTTTCTAGACCAT
BO14556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 594 | CG10326-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG10326-RA | 594 | CG10326-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-RB | 1178 | CG10326-RB | 164..755 | 16..607 | 2960 | 100 | Plus |
CG10326-RA | 1294 | CG10326-RA | 280..871 | 16..607 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16644014..16644383 | 37..406 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 16644547..16644748 | 406..607 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:11 has no hits.
BO14556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:45 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:30 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 10..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:55 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 281..871 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:45 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 274..876 | 10..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:51 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10326-RA | 281..871 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:51 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16643885..16643908 | 17..40 | 100 | -> | Plus |
3R | 16644018..16644383 | 41..406 | 100 | -> | Plus |
3R | 16644548..16644748 | 407..609 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:55 Download gff for
BO14556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12469607..12469630 | 17..40 | 100 | -> | Plus |
arm_3R | 12469740..12470105 | 41..406 | 100 | -> | Plus |
arm_3R | 12470270..12470470 | 407..609 | 99 | | Plus |
BO14556.pep Sequence
Translation from 16 to 625
> BO14556.pep
MAASQVDQKRALNKLKHDLEPFRTAIVGAYGVLTWEKQYYAGVVFGVISC
LYLVLWYLDLSLITLLSLLGVISILLNYAFPMVSRLIFGGVNWDGDQEAK
FEDVCGQVCAVKGSLVVWYEYLFNERKSTVFVIVMSLGLLAMAWIGAIIN
NLLLMYLATLLILMWPGLQNKDIFKAITQRASKIINEKIQCGKRKLQASF
LDH
BO14556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10326-PB | 197 | CG10326-PB | 1..197 | 1..197 | 1011 | 100 | Plus |
CG10326-PA | 197 | CG10326-PB | 1..197 | 1..197 | 1011 | 100 | Plus |