Clone BO14557 Report

Search the DGRC for BO14557

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG11106-RA
Protein status:BO14557.pep: validated full length
Sequenced Size:370

Clone Sequence Records

BO14557.5prime Sequence

368 bp (367 high quality bases) assembled on 2006-05-29

> BO14557.5prime
GAAGTTATCAGTCGACATGGTGTGGAATACGCTTTCCTTCTGGGACGGTC
AACCAGTCACTTCCCCGGTATATCCCCGGATGGGGGATATGTGGAACCCC
AATACCGCCGGCTACCAGAATTACCAACACCCTCAGAACCATTCGCATAG
CAATTACTTTCAACGGATGGGCATGGGTGACATTCGCCAGATGAGCTGTC
CCATGCCGAACTACTGTCCTCAATTCCGGGAGCCCGGATTGGACGATGTG
GATGCCTTTTACGCTTACAACGGCATGGATATAACTCAGGCCTACGGCGG
TGGATCTGGAGCTGGTCACGGAGCAGGATCTGGAGCGCGGGGCGACTTTT
GGGCAAGCTTTCTAGACC

BO14557.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-PA 339 CG11106-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-RB 511 CG11106-RB 86..422 16..352 1685 100 Plus
CG11106-RA 559 CG11106-RA 134..470 16..352 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11202381..11202717 16..352 1685 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:22:03 has no hits.

BO14557.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:36 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-PA 1..339 17..353 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:57 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-PA 1..339 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:46 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 129..470 10..352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:49 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 129..470 10..352 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:49 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11202376..11202717 10..352 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:46 Download gff for BO14557.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11096409..11096750 10..352 99   Plus

BO14557.3prime Sequence

368 bp (367 high quality bases) assembled on 2006-05-29

> BO14557.3prime
ATGGTCTAGAAAGCTTGCCCAAAAGTCGCCCCGCGCTCCAGATCCTGCTC
CGTGACCAGCTCCAGATCCACCGCCGTAGGCCTGAGTTATATCCATGCCG
TTGTAAGCGTAAAAGGCATCCACATCGTCCAATCCGGGCTCCCGGAATTG
AGGACAGTAGTTCGGCATGGGACAGCTCATCTGGCGAATGTCACCCATGC
CCATCCGTTGAAAGTAATTGCTATGCGAATGGTTCTGAGGGTGTTGGTAA
TTCTGGTAGCCGGCGGTATTGGGGTTCCACATATCCCCCATCCGGGGATA
TACCGGGGAAGTGACTGGTTGACCGTCCCAGAAGGAAAGCGTATTCCACA
CCATGTCGACTGATAACT

BO14557.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-PA 339 CG11106-RA 1..336 354..19 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-RB 511 CG11106-RB 86..422 355..19 1685 100 Minus
CG11106-RA 559 CG11106-RA 134..470 355..19 1685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11202381..11202717 355..19 1685 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:16:47 has no hits.

BO14557.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:35 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-PA 1..339 18..354 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:55 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-PA 1..339 18..354 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:22 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 129..470 19..361 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:39 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 129..470 19..361 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:39 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11202376..11202717 19..361 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:22 Download gff for BO14557.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11096409..11096750 19..361 99   Minus

BO14557.complete Sequence

370 bp assembled on 2006-10-11

GenBank Submission: FJ633178

> BO14557.complete
GAAGTTATCAGTCGACATGGTGTGGAATACGCTTTCCTTCTGGGACGGTC
AACCAGTCACTTCCCCGGTATATCCCCGGATGGGGGATATGTGGAACCCC
AATACCGCCGGCTACCAGAATTACCAACACCCTCAGAACCATTCGCATAG
CAATTACTTTCAACGGATGGGCATGGGTGACATTCGCCAGATGAGCTGTC
CCATGCCGAACTACTGTCCTCAATTCCGGGAGCCCGGATTGGACGATGTG
GATGCCTTTTACGCTTACAACGGCATGGATATAACTCAGGCCTACGGCGG
TGGATCTGGAGCTGGTCACGGAGCAGGATCTGGAGCGCGGGGCGACTTTT
GGGCAAGCTTTCTAGACCAT

BO14557.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-RB 339 CG11106-PB 1..336 17..352 1680 100 Plus
CG11106-RA 339 CG11106-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-RB 511 CG11106-RB 86..422 16..352 1685 100 Plus
CG11106-RA 559 CG11106-RA 134..470 16..352 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11202381..11202717 16..352 1685 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:26:09 has no hits.

BO14557.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:48 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 1..339 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:54 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 108..449 10..352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:54 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 135..470 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:48 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 108..449 10..352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:38 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
CG11106-RA 135..470 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:38 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
X 11202382..11202717 17..354 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:54 Download gff for BO14557.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11096415..11096750 17..354 99   Plus

BO14557.pep Sequence

Translation from 16 to 370

> BO14557.pep
MVWNTLSFWDGQPVTSPVYPRMGDMWNPNTAGYQNYQHPQNHSHSNYFQR
MGMGDIRQMSCPMPNYCPQFREPGLDDVDAFYAYNGMDITQAYGGGSGAG
HGAGSGARGDFWASFLDH

BO14557.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11106-PB 112 CG11106-PB 1..112 1..112 653 100 Plus
CG11106-PA 112 CG11106-PA 1..112 1..112 653 100 Plus
CG15200-PA 113 CG15200-PA 3..113 4..112 139 31.5 Plus