Clone Sequence Records
BO14561.3prime Sequence
593 bp (592 high quality bases) assembled on 2006-05-29
> BO14561.3prime
ATGGACTAGAAAGCTTGCCAACAAAATACGATGGAATTCGGGCTCATCCA
CTCCGCACAATGGGCATACCCTGCCAGTGTCGACAGCTCTCTTAATGCAC
GCTTTGCAGAAAACGTGGCCACAATTGGTGGACACTGGTAGCTTCTCGCG
GACATCTTCCAGGCACACAGGGCAGTTGTAGGGCAAGACAGATTTCTTGG
ACTCCTCGTCATCTGATTTGATCCGTTTGTTGGGAGGAGAATCCTCGTTT
GAATCTGAAGATTCTGTATGTCCCATTGGTGTTGATGATTCGGTGGAGCT
CATACTGCTATCGAAGCTAATGCTGGTCGATGAGCTTTCACTATCACTGG
AACTAGACGACTCTGAGTCGCTGGAATACTCCAACAGGAATGGGGTTCTG
TCGATAGATCTGCTGCTGCTTGAGGAGTCCGAGTCTCCGTAATACTCATT
TGGATTCCGCTCATAGGAACCGCTGAGTAAGCGGGATCTTAATCCGGAGG
GCGCGAGTACGGGAGTGGGCCCGGTGTTATGGATTCGCTGTGATACTCCA
GAATTATTCGAGGTCCTGAAGTTTTCCATGTCGACTGATAACT
BO14561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15150-PA | 564 | elfless-RA | 1..557 | 579..23 | 2735 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elfless-RC | 1376 | CG15150-RC | 226..786 | 579..19 | 2760 | 99.5 | Minus |
elfless-RB | 1643 | CG15150-RB | 226..786 | 579..19 | 2760 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18010500..18010866 | 19..385 | 1805 | 99.5 | Plus |
2L | 23513712 | 2L | 18011080..18011194 | 465..579 | 575 | 100 | Plus |
2L | 23513712 | 2L | 18010934..18011011 | 385..462 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:39:21 has no hits.
BO14561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:43 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15150-PA | 1..564 | 15..579 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:07 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15150-PA | 1..564 | 15..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:58 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 222..790 | 14..584 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:11 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 222..790 | 14..584 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:11 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18010496..18010865 | 14..384 | 98 | <- | Plus |
2L | 18010934..18011011 | 385..462 | 100 | <- | Plus |
2L | 18011078..18011198 | 463..584 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:58 Download gff for
BO14561.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18010496..18010865 | 14..384 | 98 | <- | Plus |
arm_2L | 18010934..18011011 | 385..462 | 100 | <- | Plus |
arm_2L | 18011078..18011198 | 463..584 | 97 | | Plus |
BO14561.5prime Sequence
593 bp (592 high quality bases) assembled on 2006-05-29
> BO14561.5prime
GAAGTTATCAGTCGACATGGAAAACTTCAGGACCTCGAATAATTCTGGAG
TATCACAGCGAATCCATAACACCGGGCCCACTCCCGTACTCGCGCCCTCC
GGATTAAGATCCCGCTTACTCAGCGGTTCCTCTGAGCGGAATCCAAATGA
GTATTACGGAGACTCGGACTCCTCAAGCAGCAGCAGATCTATCGACAGAA
CCCCATTCCTGTTGGAGTATTCCAGCGACTCAGAGTCGTCTAGTTCCAGT
GATAGTGAAAGCTCATCGACCAGCATTAGCTTCGATAGCAGTATGAGCTC
CACCGAATCATCAACACCAATGGGACATACAGAATCCTCAGATTCAAACG
AGGATTCTCCTCCCAACAAACGGATCAAATCAGATGACGAGGAGTCCAAG
AAATCTGTCTTGCCCTACAACTGCCCTGTGTGCCTGGAAGATGTCCGCGA
GAAGCTACCAGTGTCCACCAATTGTGGCCACGTTTTCTGCAAAGCGTGCA
TTAAGAGAGCTGTCGACACTGGCAGGGTATGCCCATTGTGCGGAGTGGAT
GAGCCCGAATTCCATCGTATTTTCTTGGCAAGCTTTCTAGACC
BO14561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15150-PA | 564 | elfless-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elfless-RC | 1376 | CG15150-RC | 226..786 | 17..577 | 2805 | 100 | Plus |
elfless-RB | 1643 | CG15150-RB | 226..786 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18010500..18010866 | 577..211 | 1835 | 100 | Minus |
2L | 23513712 | 2L | 18011077..18011194 | 134..17 | 590 | 100 | Minus |
2L | 23513712 | 2L | 18010934..18011011 | 211..134 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:07:41 has no hits.
BO14561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:44 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15150-PA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:08 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15150-PA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:50 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 222..790 | 12..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:06 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 222..790 | 12..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:06 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18010496..18010865 | 212..582 | 99 | <- | Minus |
2L | 18010934..18011011 | 134..211 | 100 | <- | Minus |
2L | 18011078..18011198 | 12..133 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:50 Download gff for
BO14561.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18010496..18010865 | 212..582 | 99 | <- | Minus |
arm_2L | 18010934..18011011 | 134..211 | 100 | <- | Minus |
arm_2L | 18011078..18011198 | 12..133 | 98 | | Minus |
BO14561.complete Sequence
595 bp assembled on 2006-10-11
GenBank Submission: FJ633179
> BO14561.complete
GAAGTTATCAGTCGACATGGAAAACTTCAGGACCTCGAATAATTCTGGAG
TATCACAGCGAATCCATAACACCGGGCCCACTCCCGTACTCGCGCCCTCC
GGATTAAGATCCCGCTTACTCAGCGGTTCCTCTGAGCGGAATCCAAATGA
GTATTACGGAGACTCGGACTCCTCAAGCAGCAGCAGATCTATCGACAGAA
CCCCATTCCTGTTGGAGTATTCCAGCGACTCAGAGTCGTCTAGTTCCAGT
GATAGTGAAAGCTCATCGACCAGCATTAGCTTCGATAGCAGTATGAGCTC
CACCGAATCATCAACACCAATGGGACATACAGAATCCTCAGATTCAAACG
AGGATTCTCCTCCCAACAAACGGATCAAATCAGATGACGAGGAGTCCAAG
AAATCTGTCTTGCCCTACAACTGCCCTGTGTGCCTGGAAGATGTCCGCGA
GAAGCTACCAGTGTCCACCAATTGTGGCCACGTTTTCTGCAAAGCGTGCA
TTAAGAGAGCTGTCGACACTGGCAGGGTATGCCCATTGTGCGGAGTGGAT
GAGCCCGAATTCCATCGTATTTTCTTGGCAAGCTTTCTAGACCAT
BO14561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elfless-RC | 690 | CG15150-PC | 127..687 | 17..577 | 2805 | 100 | Plus |
elfless-RB | 690 | CG15150-PB | 127..687 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elfless-RC | 1376 | CG15150-RC | 226..786 | 17..577 | 2805 | 100 | Plus |
elfless-RB | 1643 | CG15150-RB | 226..786 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18010500..18010866 | 577..211 | 1835 | 100 | Minus |
2L | 23513712 | 2L | 18011077..18011194 | 134..17 | 590 | 100 | Minus |
2L | 23513712 | 2L | 18010934..18011011 | 211..134 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:45 has no hits.
BO14561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:58 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:40 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RA | 12..580 | 12..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:23 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 226..786 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:16 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elfless-RB | 226..786 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:16 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18010498..18010865 | 212..579 | 99 | <- | Minus |
2L | 18010934..18011011 | 134..211 | 100 | <- | Minus |
2L | 18011078..18011194 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:23 Download gff for
BO14561.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18010498..18010865 | 212..579 | 99 | <- | Minus |
arm_2L | 18010934..18011011 | 134..211 | 100 | <- | Minus |
arm_2L | 18011078..18011194 | 17..133 | 100 | | Minus |
BO14561.pep Sequence
Translation from 16 to 595
> BO14561.pep
MENFRTSNNSGVSQRIHNTGPTPVLAPSGLRSRLLSGSSERNPNEYYGDS
DSSSSSRSIDRTPFLLEYSSDSESSSSSDSESSSTSISFDSSMSSTESST
PMGHTESSDSNEDSPPNKRIKSDDEESKKSVLPYNCPVCLEDVREKLPVS
TNCGHVFCKACIKRAVDTGRVCPLCGVDEPEFHRIFLASFLDH
BO14561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elfless-PC | 229 | CG15150-PC | 43..229 | 1..187 | 974 | 100 | Plus |
elfless-PB | 229 | CG15150-PB | 43..229 | 1..187 | 974 | 100 | Plus |
dgrn-PD | 205 | CG10981-PD | 127..205 | 109..187 | 182 | 44.4 | Plus |
dgrn-PB | 312 | CG10981-PB | 234..312 | 109..187 | 182 | 44.4 | Plus |
dgrn-PA | 319 | CG10981-PA | 241..319 | 109..187 | 182 | 44.4 | Plus |