Clone Sequence Records
BO14562.3prime Sequence
856 bp (804 high quality bases) assembled on 2006-05-29
> BO14562.3prime
ATGGTCTAGAAAGCTTGCTTTTGTATTGGCTTCGTGATCTTGATTATAGG
CAAGAGCTAAAATTAGTTTTTCGCACTCGAAGATTTCCATCTGCAATTTT
TCGTTTAGCTTTTTGCCGGCAACTGATTCTTGCTCTTTCTCCAAAACCAT
ATGCGCTTCCCTAAGACGGCTTTGCGCAAGACCCAAGAGGGAAGTTCCTT
CTGCTGGTGCCCTTCGTGCCTGCTCCTGCAGCGTGTGGGCGACCTCGATC
AGGATGACCGTGACATAGATAGCCAGCTTAATGCTATATGGATCCAGTCG
CCGGCATACGTTGTAGAGCTCACCGCAGAGCCTCAGTTTGCGCTCCAGCT
GCGTGTTGCTCAGCACGCCCAACTCCAAGCCAGCTTCGTTACCATACAGC
TGGATTAATGTGTGCTTTAGGTTGAACGTGTGAAAATGATTTGGATGCAA
CATATGGGTCAGGCGGGCCAACAGAAGTTCCACCTGATTCGCGGAGGGGC
ATCCGGCTAATAAGCCCTCCACCTGCTCGGTCATGTGGGACTGCAGTTCA
GCCACGTAAGCTCCATCCACTATCATTGGGCAAGTGTCGCACTTCCACTG
TGTGTTCTCGTCCAGTGGATCCACGGGCAAGTGGGTTCCTCCACAGGTCT
GATTTACATCCCCCAGACAAGTCAGCGCACTTATATAGGTGCCATATTCC
GTTGGATCGAGACAGCGGCTGCAGCGGCAGCTGAAATGCTTCGTTAGTCG
AAGATGGTGCTGGCGAAGTTGCGTGCCCCATAGGATATTTGTGTATGTAA
TCCGTANGTGGTCGCCTTTTCGCAAGTCACAGCCAGCACGCACAGCAACT
TGCTGA
BO14562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 1662 | CG14590-RA | 822..1659 | 856..19 | 4171 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 828..1665 | 856..19 | 4179 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6078853..6079690 | 19..856 | 4179 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:15:08 has no hits.
BO14562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:45 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 823..1662 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:09 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 823..1662 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:03 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 829..1677 | 5..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:37:33 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 829..1677 | 5..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:37:33 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6078841..6079689 | 5..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:03 Download gff for
BO14562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1966346..1967194 | 5..855 | 99 | | Plus |
BO14562.5prime Sequence
900 bp (814 high quality bases) assembled on 2006-05-29
> BO14562.5prime
GAAGTTATCAGTCGACATGGTGTCAAGCACGGAATGTCCTGTTTGCGGAG
TTGCTGCCTCACAAGCGTGCACTAGGTGCAAAATGGTGCGATACTGCGAC
CGAGAGCACCAGAAGCAGCACTGGCCGCAGCACAAGCGCAGATGTAGGCC
ATTCAGCGAGGAGCAGGATGCCGAGCTGGGCAGATATTTGAAGGTTACCC
AGAACATAGCAGCCGGGCAAATAGTCTTCATTGAGGAGCCCCTAGTGGTG
GGTCCCAAGTGGTATCTCTCCGACGCAGACAAGGAGGCCTCTAACGTTCC
GTGTGTAGGCTGTTACACTCCGTGCCGTCTGGGGAAGCACCAGTGTCGAA
GATGCCGTTGGCCAGTCTGCAGCGCAGGCTGCAAGCACGAGTCAATGGAA
TGCAGCGTGCTTAGCCTCGGATCGGGTTCACCAACTCGGGCAGATGCCCG
CTCATTGAACGACTACTTCAGGGGCGATGCTCTTTTGGTGCTCAAATGCC
TTCTGTTGCAGCGACAGAGTCCCACGAAATGGTCCGCGTTGTTAGAGATG
CAGTCTCATGAGGAGGAGCGTAAGGGCACCGATCTGTACGAGGAAGCAGA
GAAGCGAGTAGTGACCTACCTTCAAAAGCGGTTTTTATGTAGACTTAAGC
AAACTAATCCAAACCTTCTGACCGATTGTGGACCAGAGATGCTGCATCGG
CTTTGCGGCATCATCGAAACAAACTTTATGGTTATCGAACTCCCGAGTGG
CGTGGAACTCAGCGGGTTGTTCCGGCAGGCCTGCATGATGGAGCATGCTT
GTCAGCCCAACTGCGACTTTCAGTTTGATAACAAGACTCAGCAAGTTGCT
GTGCGTGCTGGCTGTGACTTGCGAAAAGGCGACCACCTACGGAATACATA
BO14562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 1662 | CG14590-RA | 1..884 | 17..900 | 4395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 7..890 | 17..900 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6079628..6080178 | 900..350 | 2740 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6080232..6080566 | 351..17 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:53:00 has no hits.
BO14562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:46 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:11 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:07 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..889 | 14..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:48 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..889 | 14..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:48 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6079629..6080176 | 352..899 | 99 | <- | Minus |
| 2R | 6080232..6080566 | 17..351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:07 Download gff for
BO14562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1967134..1967681 | 352..899 | 99 | <- | Minus |
| arm_2R | 1967737..1968071 | 17..351 | 100 | | Minus |
BO14562.complete Sequence
1693 bp assembled on 2007-06-22
GenBank Submission: FJ633180
> BO14562.complete
GAAGTTATCAGTCGACATGGTGTCAAGCACGGAATGTCCTGTTTGCGGAG
TTGCTGCCTCACAAGCGTGCACTAGGTGCAAAATGGTGCGATACTGCGAC
CGAGAGCACCAGAAGCAGCACTGGCCGCAGCACAAGCGCAGATGTAGGCC
ATTCAGCGAGGAGCAGGATGCCGAGCTGGGCAGATATTTGAAGGTTACCC
AGAACATAGCAGCCGGGCAAATAGTCTTCATTGAGGAGCCCCTAGTGGTG
GGTCCCAAGTGGTATCTCTCCGACGCAGACAAGGAGGCCTCTAACGTTCC
GTGTGTAGGCTGTTACACTCCGTGCCGTCTGGGGAAGCACCAGTGTCGAA
GATGCCGTTGGCCAGTCTGCAGCGCAGGCTGCAAGCACGAGTCAATGGAA
TGCAGCGTGCTTAGCCTCGGATCGGGTTCACCAACTCGGGCAGATGCCCG
CTCATTGAACGACTACTTCAGGGGCGATGCTCTTTTGGTGCTCAAATGCC
TTCTGTTGCAGCGACAGAGTCCCACGAAATGGTCCGCGTTGTTAGAGATG
CAGTCTCATGAGGAGGAGCGTAAGGGCACCGATCTGTACGAGGAAGCAGA
GAAGCGAGTAGTGACCTACCTTCAAAAGCGGTTTTTATGTAGACTTAAGC
AAACTAATCCAAACCTTCTGACCGATTGTGGACCAGAGATGCTGCATCGG
CTTTGCGGCATCATCGAAACAAACTTTATGGTTATCGAACTCCCGAGTGG
CGTGGAACTCAGCGGGTTGTTCCGGCAGGCCTGCATGATGGAGCATGCTT
GTCAGCCCAACTGCGACTTTCAGTTTGATAACAAGACTCAGCAAGTTGCT
GTGCGTGCTGGCTGTGACTTGCGAAAAGGCGACCACCTACGGATTACATA
CACAAATATCCTATGGGGCACGCAACTTCGCCAGCACCATCTTCGACTAA
CGAAGCATTTCAGCTGCCGCTGCAGCCGCTGTCTCGATCCAACGGAATAT
GGCACCTATATAAGTGCGCTGACTTGTCTGGGGGATGTAAATCAGACCTG
TGGAGGAACCCACTTGCCCGTGGATCCACTGGACGAGAACACACAGTGGA
AGTGCGACACTTGCCCAATGATAGTGGATGGAGCTTACGTGGCTGAACTG
CAGTCCCACATGACCGAGCAGGTGGAGGGCTTATTAGCCGGATGCCCCTC
CGCGAATCAGGTGGAACTTCTGTTGGCCCGCCTGACCCATATGTTGCATC
CAAATCATTTTCACACGTTCAACCTAAAGCACACATTAATCCAGCTGTAT
GGTAACGAAGCTGGCTTGGAGTTGGGCGTGCTGAGCAACACGCAGCTGGA
GCGCAAACTGAGGCTCTGCGGTGAGCTCTACAACGTATGCCGGCGACTGG
ATCCATATAGCATTAAGCTGGCTATCTATGTCACGGTCATCCTGATCGAG
GTCGCCCACACGCTGCAGGAGCAGGCACGAAGGGCACCAGCAGAAGGAAC
TTCCCTCTTGGGTCTTGCGCAAAGCCGTCTTAGGGAAGCGCATATGGTTT
TGGAGAAAGAGCAAGAATCAGTTGCCGGCAAAAAGCTAAACGAAAAATTG
CAGATGGAAATCTTCGAGTGCGAAAAACTAATTTTAGCTCTTGCCTATAA
TCAAGATCACGAAGCCAATACAAAAGCAAGCTTTCTAGACCAT
BO14562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1662 | CG14590-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-RA | 1877 | CG14590-RA | 7..1665 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6078853..6080178 | 1675..350 | 6630 | 100 | Minus |
| 2R | 25286936 | 2R | 6080232..6080566 | 351..17 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:59 has no hits.
BO14562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:54 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..1662 | 17..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:18 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..1677 | 14..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:20 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1661 | 17..1671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:55 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 1..1677 | 14..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:54 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14590-RA | 7..1661 | 17..1671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:54 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6078857..6080176 | 352..1671 | 100 | <- | Minus |
| 2R | 6080232..6080566 | 17..351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:20 Download gff for
BO14562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1966362..1967681 | 352..1671 | 100 | <- | Minus |
| arm_2R | 1967737..1968071 | 17..351 | 100 | | Minus |
BO14562.pep Sequence
Translation from 16 to 1693
> BO14562.pep
MVSSTECPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQ
DAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCY
TPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDY
FRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVVT
YLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSG
LFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILW
GTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHL
PVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQVE
LLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRL
CGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGL
AQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECEKLILALAYNQDHEA
NTKASFLDH
BO14562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14590-PA | 553 | CG14590-PA | 1..553 | 1..553 | 2977 | 100 | Plus |
| CG18136-PA | 530 | CG18136-PA | 5..506 | 3..517 | 593 | 30.6 | Plus |
| CG8503-PA | 513 | CG8503-PA | 4..480 | 7..514 | 500 | 29.4 | Plus |
| CG43129-PC | 503 | CG43129-PC | 7..415 | 49..463 | 492 | 31 | Plus |
| CG43129-PE | 507 | CG43129-PE | 21..419 | 55..463 | 470 | 32 | Plus |
